Wall clock time and date at job start Tue Mar 31 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46882 * 240.00097 * 3 2 1 5 5 H 1.48501 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46960 * 119.99840 * 3 2 1 7 7 C 1.38809 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00589 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.39154 * 0.02562 * 9 7 2 11 11 C 1.56476 * 107.29036 * 174.53378 * 10 9 7 12 12 C 1.53697 * 101.35911 * 338.38193 * 11 10 9 13 13 H 1.09001 * 111.10502 * 280.36916 * 12 11 10 14 14 C 1.51978 * 115.00834 * 153.19698 * 12 11 10 15 15 C 1.53889 * 107.29215 * 183.73980 * 14 12 11 16 16 N 1.46591 * 110.71110 * 51.81181 * 15 14 12 17 17 C 1.34774 * 119.75653 * 132.25397 * 16 15 14 18 18 O 1.21276 * 120.00261 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99624 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47095 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47438 * 180.02562 * 20 19 17 22 22 C 1.38620 * 120.45176 * 124.72062 * 21 20 19 23 23 C 1.38576 * 118.39988 * 179.80565 * 22 21 20 24 24 N 1.32346 * 119.10298 * 0.47106 * 23 22 21 25 25 C 1.31782 * 120.82424 * 359.74966 * 24 23 22 26 26 N 1.31812 * 121.74907 * 0.02562 * 25 24 23 27 27 C 1.47800 * 120.49314 * 312.27579 * 16 15 14 28 28 C 1.45499 * 126.40400 * 179.97438 * 9 7 2 29 29 H 1.08997 * 108.99054 * 93.64354 * 28 9 7 30 30 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.92027 * 294.33683 * 10 9 7 32 32 H 1.09000 * 109.92498 * 55.44408 * 10 9 7 33 33 H 1.08997 * 111.41104 * 220.30235 * 11 10 9 34 34 H 1.08997 * 110.93563 * 96.25758 * 11 10 9 35 35 H 1.08994 * 109.88928 * 64.28611 * 14 12 11 36 36 H 1.09004 * 109.94822 * 303.21704 * 14 12 11 37 37 H 1.09003 * 109.22824 * 291.49294 * 15 14 12 38 38 H 1.09000 * 109.19357 * 172.10990 * 15 14 12 39 39 H 1.08999 * 109.47257 * 299.99997 * 19 17 16 40 40 H 1.09003 * 109.46709 * 60.00525 * 19 17 16 41 41 H 1.08999 * 109.47252 * 300.00228 * 20 19 17 42 42 H 1.09004 * 109.47018 * 60.00044 * 20 19 17 43 43 H 1.07997 * 120.79778 * 0.02869 * 22 21 20 44 44 H 1.07996 * 120.44415 * 180.22402 * 23 22 21 45 45 H 1.07993 * 119.12318 * 179.97438 * 25 24 23 46 46 H 1.09002 * 110.06444 * 170.45374 * 27 16 15 47 47 H 1.09003 * 110.06498 * 291.91066 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1468 -2.5531 0.0017 11 6 -0.4433 -4.0830 -0.1392 12 6 0.8688 -4.5899 -0.7586 13 1 0.8990 -4.3926 -1.8302 14 6 1.1996 -6.0434 -0.4626 15 6 2.5791 -6.3335 -1.0799 16 7 3.5616 -5.3361 -0.6453 17 6 4.7655 -5.7370 -0.1910 18 8 5.5815 -4.9157 0.1701 19 6 5.0976 -7.2058 -0.1318 20 6 6.5145 -7.3866 0.4164 21 6 6.8469 -8.8553 0.4751 22 6 7.9763 -9.3460 -0.1615 23 6 8.2435 -10.7031 -0.0765 24 7 7.4121 -11.4819 0.5969 25 6 6.3449 -10.9809 1.1859 26 7 6.0615 -9.6948 1.1301 27 6 3.2417 -3.8943 -0.7012 28 6 1.9080 -3.7214 0.0017 29 1 1.9908 -4.0722 1.0304 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5629 -2.1739 0.9351 32 1 -0.5807 -2.0176 -0.8427 33 1 -1.2855 -4.2652 -0.8067 34 1 -0.6154 -4.5379 0.8363 35 1 0.4484 -6.6934 -0.9110 36 1 1.2341 -6.2050 0.6149 37 1 2.4985 -6.3082 -2.1667 38 1 2.9104 -7.3238 -0.7675 39 1 4.3874 -7.7128 0.5215 40 1 5.0387 -7.6322 -1.1332 41 1 7.2244 -6.8796 -0.2372 42 1 6.5739 -6.9600 1.4177 43 1 8.6341 -8.6859 -0.7073 44 1 9.1163 -11.1200 -0.5569 45 1 5.6848 -11.6417 1.7279 46 1 4.0128 -3.3200 -0.1876 47 1 3.1620 -3.5688 -1.7384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042075168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:08 Heat of formation + Delta-G solvation = 40.260818 kcal Electronic energy + Delta-G solvation = -28121.982497 eV Core-core repulsion = 24305.449317 eV Total energy + Delta-G solvation = -3816.533180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.36651 -40.18068 -38.30249 -35.42140 -35.23051 -33.11692 -32.88975 -31.62793 -31.11675 -29.34929 -28.49003 -26.11103 -24.73318 -24.66115 -23.62392 -22.33856 -22.15150 -20.12631 -19.68444 -18.79784 -17.90108 -17.48663 -16.75649 -16.32660 -15.81744 -15.79326 -15.58875 -15.04901 -14.78045 -14.38533 -14.22663 -14.04214 -13.76126 -13.71286 -13.19654 -12.99939 -12.85253 -12.57092 -12.36694 -12.16217 -11.86634 -11.62555 -11.43903 -11.29795 -11.18105 -10.91612 -10.85652 -10.79717 -10.72404 -10.16573 -9.98033 -9.97010 -9.83123 -9.69123 -9.61141 -9.53809 -9.46136 -8.61826 -8.41658 -6.84616 -5.70868 -3.04621 0.55410 0.69066 2.76251 3.09748 3.43131 3.43173 3.47242 3.48779 3.68813 3.82822 4.07518 4.49350 4.51625 4.68532 4.74765 4.78205 4.88817 4.92668 5.00446 5.13683 5.17163 5.28747 5.40562 5.42162 5.52574 5.62597 5.66290 5.72545 5.78379 5.79529 5.92152 6.02893 6.04260 6.08473 6.13614 6.18110 6.37962 6.49440 6.56875 6.64818 6.71888 6.75402 7.06667 7.55497 7.57503 7.62473 7.73577 7.81837 8.24016 8.32592 9.20088 9.82998 10.49880 11.41352 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.002527 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.260399 B =11079.533076 C =12134.094255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.112 4.112 13 H 0.075 0.925 14 C -0.120 4.120 15 C 0.108 3.892 16 N -0.606 5.606 17 C 0.511 3.489 18 O -0.544 6.544 19 C -0.130 4.130 20 C -0.058 4.058 21 C 0.183 3.817 22 C -0.225 4.225 23 C 0.148 3.852 24 N -0.529 5.529 25 C 0.296 3.704 26 N -0.517 5.517 27 C 0.116 3.884 28 C 0.156 3.844 29 H 0.024 0.976 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.149 0.851 44 H 0.168 0.832 45 H 0.196 0.804 46 H 0.092 0.908 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -22.254 -2.765 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.132 4.132 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.339 5.339 17 C 0.299 3.701 18 O -0.422 6.422 19 C -0.170 4.170 20 C -0.097 4.097 21 C 0.037 3.963 22 C -0.246 4.246 23 C -0.017 4.017 24 N -0.243 5.243 25 C 0.008 3.992 26 N -0.231 5.231 27 C -0.006 4.006 28 C 0.047 3.953 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.167 0.833 44 H 0.185 0.815 45 H 0.213 0.787 46 H 0.110 0.890 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.422 -22.146 -2.078 24.156 hybrid contribution 0.869 1.344 -0.490 1.673 sum 10.290 -20.803 -2.568 23.350 Atomic orbital electron populations 1.69933 1.04882 1.25178 1.56963 1.24784 0.95688 0.97649 1.02166 0.86216 0.78478 0.83194 0.78019 1.21117 1.21635 1.21105 1.18996 0.90395 0.82263 1.43950 0.90328 1.44158 1.01646 0.99215 1.86738 1.21744 0.83639 0.88322 1.00966 1.22910 0.95844 0.99691 0.99273 1.22244 0.97349 0.93420 1.00191 0.90621 1.21808 0.95286 0.97485 1.01302 1.21742 0.89449 0.91237 0.99116 1.48290 1.14071 1.07909 1.63645 1.20531 0.81784 0.90792 0.77042 1.90702 1.47938 1.55137 1.48381 1.21578 0.97804 0.94221 1.03404 1.20398 0.96997 0.87781 1.04480 1.21814 0.89316 0.96662 0.88555 1.22850 1.00247 0.98139 1.03407 1.23241 0.96702 0.90155 0.91636 1.68422 1.05237 1.40728 1.09926 1.25017 0.91823 0.89649 0.92664 1.68272 1.31915 1.04809 1.18140 1.21710 0.99042 0.78491 1.01350 1.20967 0.91051 0.87584 0.95652 0.95900 0.93711 0.94386 0.92682 0.92169 0.92560 0.90884 0.91344 0.91742 0.90265 0.87735 0.89252 0.88859 0.88262 0.83337 0.81519 0.78735 0.88987 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.43 55.49 0.58 -26.45 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.32 9.88 -15.06 -0.15 -6.47 16 8 H 0.08 2.13 7.41 -52.48 -0.39 1.74 16 9 N -0.59 -14.93 3.35 -162.22 -0.54 -15.47 16 10 C 0.18 4.25 5.49 -1.26 -0.01 4.24 16 11 C -0.14 -2.50 6.64 -24.50 -0.16 -2.66 16 12 C -0.11 -1.87 2.57 -89.55 -0.23 -2.10 16 13 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.50 5.73 -26.79 -0.15 -1.66 16 15 C 0.11 1.22 6.22 -3.53 -0.02 1.20 16 16 N -0.61 -9.03 3.01 -172.76 -0.52 -9.55 16 17 C 0.51 7.49 7.67 -10.98 -0.08 7.41 16 18 O -0.54 -10.04 15.35 5.56 0.09 -9.96 16 19 C -0.13 -1.32 3.90 -27.88 -0.11 -1.43 16 20 C -0.06 -0.57 4.94 -27.88 -0.14 -0.70 16 21 C 0.18 1.66 6.21 -82.24 -0.51 1.15 16 22 C -0.22 -1.61 9.80 -39.32 -0.39 -2.00 16 23 C 0.15 1.05 11.30 -17.21 -0.19 0.85 16 24 N -0.53 -4.72 10.44 -14.59 -0.15 -4.87 16 25 C 0.30 2.55 12.29 -92.15 -1.13 1.42 16 26 N -0.52 -5.09 10.04 -10.80 -0.11 -5.20 16 27 C 0.12 2.19 5.68 -3.97 -0.02 2.17 16 28 C 0.16 3.20 2.76 -67.88 -0.19 3.01 16 29 H 0.02 0.52 7.95 -51.93 -0.41 0.10 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 32 H 0.05 1.45 7.19 -51.93 -0.37 1.08 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.70 5.85 -51.93 -0.30 0.39 16 39 H 0.10 1.03 7.39 -51.93 -0.38 0.64 16 40 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 41 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 42 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.15 0.71 8.01 -52.49 -0.42 0.29 16 44 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.09 1.96 6.76 -51.93 -0.35 1.61 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -33.71 373.61 -10.85 -44.56 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.21 Total: -0.19 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -3.58 Total: 4.15 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.75 Total: -61.54 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.71 -10.85 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042075168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.818 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds