Wall clock time and date at job start Tue Mar 31 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99610 * 2 1 4 4 H 1.48498 * 109.47479 * 270.00100 * 3 2 1 5 5 H 1.48501 * 109.47252 * 30.00608 * 3 2 1 6 6 H 1.48504 * 109.46974 * 150.00549 * 3 2 1 7 7 C 1.38808 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00319 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.48159 * 126.40203 * 359.97438 * 9 7 2 11 11 C 1.55294 * 107.04461 * 185.00201 * 10 9 7 12 12 C 1.53698 * 101.81437 * 22.44935 * 11 10 9 13 13 H 1.08999 * 111.69752 * 78.83546 * 12 11 10 14 14 C 1.51974 * 115.00513 * 206.53244 * 12 11 10 15 15 C 1.53893 * 107.29514 * 175.43830 * 14 12 11 16 16 N 1.46591 * 110.70681 * 308.18449 * 15 14 12 17 17 C 1.34778 * 119.75261 * 227.75143 * 16 15 14 18 18 O 1.21569 * 120.00213 * 7.05096 * 17 16 15 19 19 C 1.47713 * 120.00023 * 187.05173 * 17 16 15 20 20 C 1.41398 * 126.51286 * 187.32392 * 19 17 16 21 21 C 1.35450 * 105.43274 * 179.72484 * 20 19 17 22 22 N 1.34858 * 107.67901 * 0.38885 * 21 20 19 23 23 N 1.29369 * 109.59057 * 359.78290 * 22 21 20 24 24 C 1.47460 * 110.69535 * 179.69527 * 22 21 20 25 25 C 1.54323 * 105.62712 * 17.29899 * 24 22 21 26 26 C 1.51334 * 141.96145 * 180.56761 * 21 20 19 27 27 C 1.47803 * 120.49238 * 48.01972 * 16 15 14 28 28 C 1.45510 * 126.39759 * 179.97438 * 9 7 2 29 29 H 1.08993 * 109.56928 * 266.62353 * 28 9 7 30 30 H 0.97004 * 120.00167 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.91777 * 304.35809 * 10 9 7 32 32 H 1.09004 * 109.91880 * 65.45755 * 10 9 7 33 33 H 1.08995 * 110.96328 * 264.31455 * 11 10 9 34 34 H 1.09010 * 110.95716 * 140.57328 * 11 10 9 35 35 H 1.09005 * 109.89401 * 55.99140 * 14 12 11 36 36 H 1.09007 * 109.95431 * 294.92177 * 14 12 11 37 37 H 1.09000 * 109.23071 * 187.86595 * 15 14 12 38 38 H 1.08999 * 109.18989 * 68.47752 * 15 14 12 39 39 H 1.07997 * 127.28162 * 359.97438 * 20 19 17 40 40 H 1.09000 * 110.21218 * 136.33834 * 24 22 21 41 41 H 1.08995 * 110.21777 * 258.17792 * 24 22 21 42 42 H 1.09005 * 110.96480 * 92.21887 * 25 24 22 43 43 H 1.08994 * 110.96881 * 215.94000 * 25 24 22 44 44 H 1.09003 * 110.49379 * 282.00181 * 26 21 20 45 45 H 1.09002 * 110.49944 * 44.66599 * 26 21 20 46 46 H 1.08992 * 110.06200 * 67.69075 * 27 16 15 47 47 H 1.08999 * 110.06394 * 189.25406 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 0.0005 11 6 -0.4340 -4.0738 0.1295 12 6 0.8689 -4.5877 0.7624 13 1 0.9013 -4.3912 1.8340 14 6 1.1981 -6.0412 0.4646 15 6 2.5785 -6.3329 1.0791 16 7 3.5610 -5.3360 0.6432 17 6 4.7636 -5.7376 0.1860 18 8 4.9849 -6.9207 0.0151 19 6 5.8129 -4.7401 -0.1073 20 6 7.0614 -4.9885 -0.7228 21 6 7.6775 -3.7840 -0.7871 22 7 6.8518 -2.8716 -0.2354 23 7 5.7646 -3.4521 0.1576 24 6 7.4636 -1.5302 -0.2643 25 6 8.6052 -1.6162 -1.2993 26 6 8.9530 -3.1215 -1.2609 27 6 3.2447 -3.8936 0.7068 28 6 1.9082 -3.7214 -0.0016 29 1 1.9982 -4.0796 -1.0270 30 1 -0.4850 0.8401 0.0004 31 1 -0.5796 -2.0202 0.8471 32 1 -0.5639 -2.1711 -0.9312 33 1 -0.5962 -4.5245 -0.8496 34 1 -1.2847 -4.2555 0.7866 35 1 1.2306 -6.2009 -0.6132 36 1 0.4474 -6.6920 0.9132 37 1 2.9089 -7.3233 0.7660 38 1 2.4995 -6.3077 2.1659 39 1 7.4414 -5.9373 -1.0718 40 1 6.7286 -0.7877 -0.5750 41 1 7.8624 -1.2768 0.7179 42 1 8.2570 -1.3215 -2.2893 43 1 9.4573 -1.0103 -0.9913 44 1 9.7641 -3.3079 -0.5570 45 1 9.2209 -3.4768 -2.2560 46 1 3.1646 -3.5739 1.7456 47 1 4.0169 -3.3186 0.1958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042081584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:06 Heat of formation + Delta-G solvation = 100.593399 kcal Electronic energy + Delta-G solvation = -29576.890622 eV Core-core repulsion = 25762.973659 eV Total energy + Delta-G solvation = -3813.916963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.84510 -39.88583 -38.09845 -36.47989 -35.10005 -32.99340 -31.75247 -31.37496 -29.60395 -29.01705 -28.25312 -27.35269 -24.96467 -24.03040 -23.10492 -21.82440 -21.38090 -20.66844 -20.03098 -19.56991 -18.55595 -17.11426 -16.70479 -16.33928 -16.11624 -15.48868 -15.10389 -14.76462 -14.45571 -14.22221 -14.07794 -13.78764 -13.58380 -13.40568 -13.12827 -13.05716 -12.98029 -12.54345 -12.29683 -11.99167 -11.89378 -11.82916 -11.51727 -11.42043 -11.24996 -10.87586 -10.80540 -10.69798 -10.55017 -10.13130 -9.99349 -9.82135 -9.72345 -9.58518 -9.23429 -8.99740 -8.81412 -8.61411 -8.26443 -6.82150 -5.70292 -3.03010 1.72538 2.15633 2.30900 3.26883 3.36394 3.39841 3.43611 3.63606 3.84305 4.25100 4.41930 4.46657 4.54125 4.75926 5.05068 5.10423 5.11573 5.19997 5.27707 5.30386 5.40365 5.42873 5.47785 5.59857 5.65474 5.68393 5.77035 5.84216 5.88786 5.95576 6.02114 6.14389 6.23980 6.24906 6.32651 6.35695 6.52599 6.57914 6.64601 6.75145 6.75707 7.07111 7.15092 7.56296 7.64481 7.67603 7.83451 8.11256 8.25886 8.45739 9.20994 9.84066 10.52662 11.42338 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008987 B = 0.005666 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.744019 B = 4940.331422 C = 7848.585066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.076 0.924 14 C -0.118 4.118 15 C 0.113 3.887 16 N -0.593 5.593 17 C 0.605 3.395 18 O -0.548 6.548 19 C -0.008 4.008 20 C -0.166 4.166 21 C -0.013 4.013 22 N -0.307 5.307 23 N -0.226 5.226 24 C 0.118 3.882 25 C -0.131 4.131 26 C -0.057 4.057 27 C 0.093 3.907 28 C 0.156 3.844 29 H 0.022 0.978 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.158 0.842 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.577 -6.556 -0.529 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.009 4.009 16 N -0.325 5.325 17 C 0.391 3.609 18 O -0.425 6.425 19 C -0.168 4.168 20 C -0.194 4.194 21 C -0.138 4.138 22 N -0.095 5.095 23 N -0.060 5.060 24 C -0.002 4.002 25 C -0.170 4.170 26 C -0.096 4.096 27 C -0.030 4.030 28 C 0.047 3.953 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.176 0.824 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.840 -5.913 -0.049 15.050 hybrid contribution 0.708 0.509 -0.268 0.912 sum 14.548 -5.404 -0.317 15.522 Atomic orbital electron populations 1.69944 1.04812 1.24891 1.57292 1.24770 0.95656 0.97474 1.02591 0.86182 0.78627 0.83919 0.77427 1.21777 1.21692 1.20807 1.19014 0.90325 0.82279 1.43257 0.90413 1.44167 1.01666 0.99228 1.86609 1.21537 0.83680 0.88554 1.00914 1.22714 0.96049 0.99556 0.99264 1.22276 0.97265 0.93632 1.00096 0.90527 1.21802 0.95418 0.97180 1.01288 1.21597 0.88374 0.92456 0.98490 1.48124 1.13457 1.08571 1.62341 1.16955 0.80950 0.86300 0.76702 1.90727 1.80756 1.16582 1.54391 1.21874 0.97094 0.90523 1.07302 1.20843 0.94022 0.97457 1.07119 1.22393 0.95682 0.91211 1.04510 1.47122 1.11050 1.09729 1.41564 1.73711 1.05190 1.07482 1.19606 1.22651 0.95673 0.79980 1.01886 1.22782 0.97706 0.96621 0.99848 1.20745 0.92889 0.93020 1.02934 1.22654 1.00246 0.78063 1.02019 1.21090 0.91263 0.87422 0.95517 0.96056 0.93826 0.92697 0.94477 0.92570 0.92264 0.91492 0.90911 0.89313 0.91903 0.82436 0.87788 0.88401 0.89169 0.87862 0.88991 0.88821 0.91400 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.43 55.49 0.58 -26.37 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.22 -6.06 9.88 -15.06 -0.15 -6.21 16 8 H 0.08 2.08 7.42 -52.49 -0.39 1.69 16 9 N -0.59 -15.11 3.35 -162.64 -0.54 -15.65 16 10 C 0.18 4.34 5.45 -1.91 -0.01 4.33 16 11 C -0.14 -2.63 6.54 -25.15 -0.16 -2.79 16 12 C -0.11 -2.07 2.61 -89.51 -0.23 -2.30 16 13 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 14 C -0.12 -1.80 5.72 -26.79 -0.15 -1.95 16 15 C 0.11 1.76 6.36 -3.53 -0.02 1.74 16 16 N -0.59 -10.75 3.00 -173.63 -0.52 -11.27 16 17 C 0.60 11.38 7.66 -12.39 -0.09 11.28 16 18 O -0.55 -10.97 16.27 5.31 0.09 -10.89 16 19 C -0.01 -0.15 6.79 -82.90 -0.56 -0.71 16 20 C -0.17 -2.48 10.82 -39.37 -0.43 -2.90 16 21 C -0.01 -0.17 7.47 -81.95 -0.61 -0.78 16 22 N -0.31 -4.37 4.40 -55.55 -0.24 -4.62 16 23 N -0.23 -4.00 8.67 33.37 0.29 -3.71 16 24 C 0.12 1.13 7.78 -2.82 -0.02 1.11 16 25 C -0.13 -0.80 7.17 -25.23 -0.18 -0.98 16 26 C -0.06 -0.42 6.86 -26.76 -0.18 -0.60 16 27 C 0.09 1.86 5.30 -3.72 -0.02 1.84 16 28 C 0.16 3.36 2.77 -67.59 -0.19 3.17 16 29 H 0.02 0.51 7.93 -51.93 -0.41 0.10 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 1.47 7.21 -51.93 -0.37 1.10 16 32 H 0.04 1.00 7.76 -51.93 -0.40 0.59 16 33 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.36 6.92 -51.93 -0.36 1.00 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.13 2.62 4.02 -67.56 -0.27 2.35 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -34.06 364.95 -10.25 -44.31 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.25 Total: 2.05 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.12 Total: 3.90 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.44 Total: -61.63 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.06 -10.25 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.906 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds