Wall clock time and date at job start Tue Mar 31 2020 04:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99737 * 2 1 4 4 H 1.48504 * 109.47054 * 269.99519 * 3 2 1 5 5 H 1.48502 * 109.47477 * 29.99852 * 3 2 1 6 6 H 1.48499 * 109.47130 * 150.00083 * 3 2 1 7 7 C 1.38813 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99780 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.48151 * 126.40404 * 0.02562 * 9 7 2 11 11 C 1.55294 * 107.04790 * 175.02197 * 10 9 7 12 12 C 1.53705 * 101.84641 * 337.53472 * 11 10 9 13 13 H 1.09000 * 111.09813 * 281.42756 * 12 11 10 14 14 C 1.51971 * 115.01318 * 153.49443 * 12 11 10 15 15 C 1.53889 * 107.28657 * 184.53893 * 14 12 11 16 16 N 1.46602 * 110.70638 * 51.81151 * 15 14 12 17 17 C 1.34775 * 119.75060 * 132.23440 * 16 15 14 18 18 O 1.21607 * 119.99731 * 175.76778 * 17 16 15 19 19 C 1.47432 * 120.00264 * 355.76290 * 17 16 15 20 20 C 1.41203 * 126.43515 * 48.87771 * 19 17 16 21 21 N 1.30284 * 108.02806 * 179.97438 * 20 19 17 22 22 N 1.40511 * 109.01942 * 0.47034 * 21 20 19 23 23 C 1.34022 * 108.16744 * 359.54329 * 22 21 20 24 24 C 1.51388 * 110.34100 * 180.25486 * 23 22 21 25 25 C 1.54559 * 104.14713 * 16.46117 * 24 23 22 26 26 C 1.47254 * 140.81495 * 179.42933 * 22 21 20 27 27 C 1.47899 * 119.97950 * 311.80699 * 16 15 14 28 28 C 1.45520 * 126.39198 * 180.02562 * 9 7 2 29 29 H 1.08995 * 109.56934 * 93.34780 * 28 9 7 30 30 H 0.96997 * 119.99888 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.91899 * 55.67336 * 10 9 7 32 32 H 1.09003 * 110.08713 * 294.46270 * 10 9 7 33 33 H 1.08997 * 110.95982 * 95.67535 * 11 10 9 34 34 H 1.08997 * 110.96690 * 219.38493 * 11 10 9 35 35 H 1.09000 * 109.89015 * 303.98479 * 14 12 11 36 36 H 1.08998 * 109.89587 * 65.02118 * 14 12 11 37 37 H 1.08996 * 109.23022 * 172.12159 * 15 14 12 38 38 H 1.08997 * 109.23256 * 291.49605 * 15 14 12 39 39 H 1.08002 * 125.98548 * 0.09726 * 20 19 17 40 40 H 1.09006 * 110.49095 * 135.12486 * 24 23 22 41 41 H 1.09004 * 110.49564 * 257.79187 * 24 23 22 42 42 H 1.09003 * 110.99668 * 93.07235 * 25 24 23 43 43 H 1.08999 * 110.99298 * 216.88744 * 25 24 23 44 44 H 1.08994 * 110.22902 * 43.96984 * 26 22 21 45 45 H 1.08999 * 110.30155 * 282.05007 * 26 22 21 46 46 H 1.08993 * 110.46530 * 292.90158 * 27 16 15 47 47 H 1.09002 * 109.63147 * 171.35709 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1467 -2.5531 0.0017 11 6 -0.4343 -4.0739 -0.1257 12 6 0.8678 -4.5892 -0.7595 13 1 0.8909 -4.3847 -1.8299 14 6 1.1963 -6.0427 -0.4613 15 6 2.5757 -6.3355 -1.0774 16 7 3.5593 -5.3389 -0.6435 17 6 4.7622 -5.7408 -0.1876 18 8 5.6093 -4.9174 0.1009 19 6 5.0511 -7.1789 -0.0384 20 6 4.8262 -8.1840 -1.0042 21 7 5.2099 -9.3219 -0.4988 22 7 5.6846 -9.1066 0.8060 23 6 5.5867 -7.7974 1.0756 24 6 6.0928 -7.5085 2.4728 25 6 6.9001 -8.7712 2.8507 26 6 6.2431 -9.8417 1.9532 27 6 3.2331 -3.8981 -0.7161 28 6 1.9083 -3.7214 0.0028 29 1 1.9995 -4.0791 1.0283 30 1 -0.4850 0.8400 0.0004 31 1 -0.5802 -2.0210 -0.8450 32 1 -0.5660 -2.1728 0.9332 33 1 -0.5956 -4.5237 0.8539 34 1 -1.2857 -4.2562 -0.7813 35 1 1.2302 -6.2016 0.6166 36 1 0.4438 -6.6923 -0.9083 37 1 2.9059 -7.3258 -0.7640 38 1 2.4959 -6.3116 -2.1642 39 1 4.4109 -8.0353 -1.9900 40 1 6.7375 -6.6296 2.4710 41 1 5.2581 -7.3694 3.1599 42 1 7.9548 -8.6487 2.6042 43 1 6.7731 -9.0146 3.9056 44 1 6.9901 -10.5590 1.6136 45 1 5.4493 -10.3538 2.4969 46 1 3.1399 -3.5803 -1.7545 47 1 4.0104 -3.3209 -0.2154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042083125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:09 Heat of formation + Delta-G solvation = 93.341331 kcal Electronic energy + Delta-G solvation = -29112.415751 eV Core-core repulsion = 25298.184314 eV Total energy + Delta-G solvation = -3814.231437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -42.04813 -39.82892 -37.99393 -36.61240 -35.23020 -32.81865 -31.52077 -31.05827 -29.72137 -29.41861 -28.48956 -27.23725 -24.69098 -23.93373 -22.62810 -22.16032 -21.60473 -20.71247 -19.98768 -19.54060 -18.69688 -17.35073 -16.74857 -16.33772 -15.80172 -15.28296 -14.80636 -14.69907 -14.59109 -14.27253 -14.10569 -13.94177 -13.83635 -13.52592 -13.40431 -13.09849 -12.83838 -12.61327 -12.26357 -12.14778 -12.01269 -11.82724 -11.62625 -11.45505 -11.24299 -11.02593 -10.88164 -10.74762 -10.69809 -10.11270 -9.92035 -9.83104 -9.67682 -9.57032 -9.49354 -9.41028 -8.65916 -8.58837 -8.28244 -6.81405 -5.67998 -3.01485 1.48894 1.94674 2.17568 3.07343 3.42976 3.44662 3.50259 3.52571 3.68043 4.10609 4.26684 4.34971 4.54923 4.65982 4.86534 4.98452 4.99566 5.05758 5.09386 5.17555 5.22117 5.36167 5.45227 5.47099 5.49934 5.60050 5.63984 5.68631 5.76670 5.83994 5.99735 6.09208 6.13897 6.21119 6.23639 6.26821 6.45077 6.45939 6.56014 6.62649 6.78345 6.84329 7.12704 7.45640 7.59386 7.63881 7.73419 7.85340 8.27139 8.49535 9.23298 9.86257 10.53191 11.44409 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.003234 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.060541 B = 8657.215536 C = 9486.470361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.118 4.118 15 C 0.104 3.896 16 N -0.600 5.600 17 C 0.591 3.409 18 O -0.544 6.544 19 C -0.265 4.265 20 C 0.083 3.917 21 N -0.277 5.277 22 N -0.385 5.385 23 C 0.122 3.878 24 C -0.074 4.074 25 C -0.132 4.132 26 C 0.127 3.873 27 C 0.118 3.882 28 C 0.157 3.843 29 H 0.024 0.976 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.196 0.804 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 -21.726 3.064 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.156 4.156 15 C -0.020 4.020 16 N -0.333 5.333 17 C 0.379 3.621 18 O -0.421 6.421 19 C -0.280 4.280 20 C -0.104 4.104 21 N -0.096 5.096 22 N -0.166 5.166 23 C -0.011 4.011 24 C -0.113 4.113 25 C -0.170 4.170 26 C 0.007 3.993 27 C -0.004 4.004 28 C 0.048 3.952 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.213 0.787 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.565 -22.534 3.014 24.295 hybrid contribution 0.141 1.684 -0.037 1.690 sum 8.706 -20.850 2.977 22.790 Atomic orbital electron populations 1.69946 1.04886 1.25004 1.57153 1.24778 0.95672 0.97621 1.02247 0.86147 0.78718 0.83539 0.77600 1.21595 1.21749 1.20580 1.19059 0.90468 0.82271 1.43668 0.90231 1.44173 1.01642 0.99219 1.86692 1.21526 0.83696 0.88476 1.00945 1.22730 0.96071 0.99642 0.99213 1.22293 0.97324 0.93487 1.00189 0.90419 1.21776 0.95438 0.97286 1.01142 1.21881 0.89224 0.92020 0.98842 1.48136 1.13788 1.07686 1.63642 1.17342 0.81656 0.86475 0.76668 1.90764 1.45964 1.54375 1.51029 1.19438 1.17867 0.94964 0.95769 1.24067 0.97985 0.88508 0.99840 1.77171 1.19977 1.22992 0.89455 1.50013 1.48259 1.07310 1.10974 1.22376 0.96138 0.86511 0.96041 1.21024 1.00872 0.99757 0.89635 1.22843 1.00611 0.93056 1.00501 1.22429 0.98704 0.95425 0.82734 1.21739 0.98967 0.78357 1.01350 1.20993 0.91156 0.87494 0.95550 0.95855 0.93813 0.92682 0.94502 0.92659 0.92290 0.91609 0.91018 0.89873 0.91781 0.78727 0.87611 0.88078 0.89188 0.87697 0.88752 0.88972 0.91079 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.44 55.49 0.58 -26.55 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.32 9.88 -15.06 -0.15 -6.47 16 8 H 0.08 2.18 7.43 -52.49 -0.39 1.79 16 9 N -0.59 -15.03 3.35 -162.87 -0.55 -15.57 16 10 C 0.18 4.28 5.45 -1.92 -0.01 4.27 16 11 C -0.14 -2.53 6.54 -25.15 -0.16 -2.70 16 12 C -0.11 -1.94 2.60 -89.47 -0.23 -2.17 16 13 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 14 C -0.12 -1.58 5.72 -26.79 -0.15 -1.73 16 15 C 0.10 1.32 5.60 -3.52 -0.02 1.30 16 16 N -0.60 -9.74 3.00 -173.93 -0.52 -10.26 16 17 C 0.59 10.10 7.56 -12.52 -0.09 10.01 16 18 O -0.54 -11.27 16.53 5.27 0.09 -11.19 16 19 C -0.27 -3.74 5.07 -105.04 -0.53 -4.27 16 20 C 0.08 1.00 9.61 -17.08 -0.16 0.84 16 21 N -0.28 -3.52 12.64 30.82 0.39 -3.14 16 22 N -0.39 -4.29 4.81 -55.13 -0.27 -4.55 16 23 C 0.12 1.49 7.51 -81.31 -0.61 0.88 16 24 C -0.07 -0.64 6.86 -26.73 -0.18 -0.82 16 25 C -0.13 -0.64 7.18 -25.19 -0.18 -0.82 16 26 C 0.13 0.80 7.78 -2.91 -0.02 0.78 16 27 C 0.12 2.30 5.68 -3.90 -0.02 2.27 16 28 C 0.16 3.27 2.79 -67.78 -0.19 3.08 16 29 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 32 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 33 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.94 4.65 -51.93 -0.24 0.70 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.20 1.80 7.59 -52.49 -0.40 1.40 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.09 1.98 6.80 -51.93 -0.35 1.62 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -35.19 366.27 -9.80 -44.99 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.19 Total: -0.82 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.82 Total: 4.15 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.36 Total: -60.07 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.19 -9.80 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042083125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.327 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds