Wall clock time and date at job start Tue Mar 31 2020 04:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47042 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47091 * 120.00428 * 3 2 1 6 6 H 1.48504 * 109.46917 * 240.00472 * 3 2 1 7 7 C 1.38813 * 119.99909 * 180.27983 * 2 1 3 8 8 H 1.07998 * 119.99760 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.47438 * 126.06216 * 359.69964 * 9 7 2 11 11 C 1.54514 * 107.13783 * 178.22508 * 10 9 7 12 12 C 1.56027 * 102.70862 * 337.53417 * 11 10 9 13 13 H 1.08998 * 112.85915 * 156.84884 * 12 11 10 14 14 C 1.53090 * 107.06988 * 281.16879 * 12 11 10 15 15 C 1.52843 * 110.57436 * 164.90203 * 14 12 11 16 16 N 1.47141 * 107.98302 * 302.65779 * 15 14 12 17 17 C 1.34776 * 121.21750 * 237.30541 * 16 15 14 18 18 O 1.21605 * 120.00092 * 357.83085 * 17 16 15 19 19 C 1.47426 * 120.00557 * 177.82979 * 17 16 15 20 20 C 1.41210 * 126.43303 * 35.95343 * 19 17 16 21 21 N 1.30293 * 108.02822 * 179.97438 * 20 19 17 22 22 N 1.40517 * 109.01863 * 359.91369 * 21 20 19 23 23 C 1.34024 * 108.16398 * 359.92674 * 22 21 20 24 24 C 1.51401 * 110.33728 * 179.47205 * 23 22 21 25 25 C 1.54566 * 104.20451 * 343.95262 * 24 23 22 26 26 C 1.47249 * 140.81775 * 180.29600 * 22 21 20 27 27 C 1.44083 * 117.56534 * 56.69257 * 16 15 14 28 28 C 1.46463 * 126.06011 * 180.02562 * 9 7 2 29 29 H 1.09006 * 108.42749 * 90.11278 * 28 9 7 30 30 H 0.96999 * 119.99790 * 359.72572 * 1 2 3 31 31 H 1.09001 * 109.89926 * 297.75332 * 10 9 7 32 32 H 1.09005 * 109.89949 * 58.98345 * 10 9 7 33 33 H 1.09005 * 110.92852 * 219.13532 * 11 10 9 34 34 H 1.09003 * 110.70790 * 95.83879 * 11 10 9 35 35 H 1.08994 * 109.26221 * 285.19045 * 14 12 11 36 36 H 1.09007 * 109.25523 * 44.62864 * 14 12 11 37 37 H 1.09002 * 109.75610 * 62.28183 * 15 14 12 38 38 H 1.09000 * 109.75972 * 182.97922 * 15 14 12 39 39 H 1.07994 * 125.98897 * 359.89875 * 20 19 17 40 40 H 1.09002 * 110.64347 * 225.17482 * 24 23 22 41 41 H 1.08992 * 110.40108 * 102.60320 * 24 23 22 42 42 H 1.09007 * 110.98631 * 266.71070 * 25 24 23 43 43 H 1.09000 * 111.02574 * 142.91436 * 25 24 23 44 44 H 1.09003 * 110.22800 * 316.06028 * 26 22 21 45 45 H 1.08997 * 110.23425 * 78.01921 * 26 22 21 46 46 H 1.09003 * 108.86006 * 187.16678 * 27 16 15 47 47 H 1.09008 * 108.06678 * 68.69510 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0063 9 7 1.3256 -2.3880 -0.0111 10 6 -0.1405 -2.5437 -0.0050 11 6 -0.4377 -4.0590 -0.0603 12 6 0.8717 -4.6434 -0.6754 13 1 1.0213 -5.6952 -0.4318 14 6 0.8092 -4.3949 -2.1847 15 6 2.1864 -4.5889 -2.8186 16 7 3.1264 -3.6742 -2.1517 17 6 3.8291 -2.7620 -2.8521 18 8 3.7219 -2.7103 -4.0623 19 6 4.7277 -1.8268 -2.1512 20 6 5.5107 -2.1117 -1.0112 21 7 6.1664 -1.0318 -0.6922 22 7 5.8412 -0.0127 -1.6034 23 6 4.9664 -0.5082 -2.4896 24 6 4.5713 0.5567 -3.4907 25 6 5.0220 1.8810 -2.8334 26 6 6.1500 1.3966 -1.8975 27 6 3.2581 -3.7802 -0.7208 28 6 1.9199 -3.7266 -0.0171 29 1 2.0578 -4.0470 1.0157 30 1 -0.4850 0.8400 0.0040 31 1 -0.5554 -2.1149 0.9072 32 1 -0.5696 -2.0513 -0.8778 33 1 -1.2928 -4.2649 -0.7043 34 1 -0.6053 -4.4557 0.9410 35 1 0.1044 -5.0936 -2.6353 36 1 0.4700 -3.3751 -2.3674 37 1 2.5138 -5.6193 -2.6801 38 1 2.1381 -4.3577 -3.8827 39 1 5.5571 -3.0583 -0.4935 40 1 3.4925 0.5559 -3.6470 41 1 5.0929 0.4025 -4.4352 42 1 4.2085 2.3310 -2.2642 43 1 5.4055 2.5772 -3.5793 44 1 6.1539 1.9815 -0.9777 45 1 7.1149 1.4745 -2.3985 46 1 3.8845 -2.9630 -0.3631 47 1 3.7443 -4.7294 -0.4955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042083127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:19 Heat of formation + Delta-G solvation = 101.366421 kcal Electronic energy + Delta-G solvation = -31102.399457 eV Core-core repulsion = 27288.516015 eV Total energy + Delta-G solvation = -3813.883443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.58716 -39.74577 -37.81292 -36.16795 -34.79996 -33.04081 -31.43679 -30.55023 -29.25671 -28.95683 -28.48819 -26.99890 -24.59093 -24.01422 -22.63341 -22.11898 -21.23606 -20.42917 -19.87048 -19.20416 -18.07473 -16.99639 -16.53969 -16.38302 -15.50824 -14.97983 -14.68058 -14.51957 -14.30925 -14.19364 -13.89026 -13.69963 -13.63604 -13.22091 -13.08849 -12.68779 -12.48123 -12.44606 -11.97835 -11.88729 -11.56311 -11.53013 -11.48774 -11.32468 -11.06484 -10.84464 -10.77131 -10.59070 -10.42089 -10.16071 -9.85453 -9.74797 -9.61679 -9.50603 -9.24201 -8.94528 -8.53069 -8.21882 -7.91516 -6.76669 -5.66094 -2.97435 1.99411 2.44250 2.58835 3.26129 3.39788 3.41250 3.47379 3.97545 4.18275 4.49509 4.61046 4.76643 4.83510 5.09284 5.12288 5.24048 5.37334 5.42338 5.46739 5.50765 5.56165 5.62586 5.65048 5.77064 5.82238 5.84290 5.88339 5.96584 6.02659 6.06833 6.10035 6.17108 6.24385 6.30340 6.35629 6.44911 6.61128 6.70639 6.72637 6.79391 6.96239 7.06193 7.17853 7.61187 7.66180 7.86997 7.94934 8.08666 8.29102 8.82392 9.25915 9.87907 10.54634 11.46122 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.007045 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.250024 B = 3973.641137 C = 5323.785759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.889 3.111 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.207 4.207 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.121 4.121 15 C 0.117 3.883 16 N -0.584 5.584 17 C 0.609 3.391 18 O -0.563 6.563 19 C -0.257 4.257 20 C 0.080 3.920 21 N -0.278 5.278 22 N -0.384 5.384 23 C 0.141 3.859 24 C -0.067 4.067 25 C -0.146 4.146 26 C 0.131 3.869 27 C 0.092 3.908 28 C 0.154 3.846 29 H 0.028 0.972 30 H 0.249 0.751 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.194 0.806 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -3.783 -4.523 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.721 3.279 4 H -0.221 1.221 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.335 4.335 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.159 4.159 15 C -0.006 4.006 16 N -0.315 5.315 17 C 0.399 3.601 18 O -0.443 6.443 19 C -0.272 4.272 20 C -0.107 4.107 21 N -0.097 5.097 22 N -0.163 5.163 23 C 0.008 3.992 24 C -0.106 4.106 25 C -0.184 4.184 26 C 0.010 3.990 27 C -0.033 4.033 28 C 0.045 3.955 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.211 0.789 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.117 0.883 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.618 -2.836 -4.182 9.990 hybrid contribution -0.350 0.545 -0.104 0.656 sum 8.269 -2.290 -4.286 9.591 Atomic orbital electron populations 1.69938 1.04707 1.24662 1.57850 1.24669 0.95488 0.97189 1.02997 0.86597 0.78774 0.84241 0.78299 1.22059 1.21762 1.19384 1.18882 0.90217 0.82115 1.42299 0.90583 1.44252 1.01457 0.99219 1.86386 1.21202 0.84250 0.88367 1.00702 1.23149 0.96217 0.99682 0.99135 1.22373 0.97041 0.97704 0.94999 0.90770 1.21796 0.95895 1.03220 0.95005 1.21485 0.88930 0.92067 0.98079 1.46935 1.41725 1.35235 1.07564 1.17156 0.78621 0.78545 0.85795 1.90678 1.67966 1.71669 1.13960 1.19160 1.10311 0.94333 1.03382 1.24029 0.94557 0.97596 0.94479 1.77112 1.24940 0.94989 1.12638 1.49886 1.34359 1.10353 1.21748 1.22232 0.91310 0.93530 0.92099 1.20908 1.04237 0.89293 0.96135 1.23157 0.98605 0.97769 0.98915 1.22351 0.99590 0.76400 1.00670 1.21459 0.99778 1.01448 0.80601 1.20713 0.91197 0.87885 0.95669 0.95521 0.94050 0.94237 0.93671 0.92353 0.92824 0.92155 0.90265 0.92165 0.89619 0.78932 0.88030 0.88453 0.88069 0.88215 0.89081 0.89347 0.88291 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.38 55.49 0.58 -26.22 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.89 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.27 -5.67 4.12 56.52 0.23 -5.44 16 7 C -0.21 -5.46 9.70 -15.06 -0.15 -5.61 16 8 H 0.08 2.00 5.59 -52.49 -0.29 1.71 16 9 N -0.59 -14.11 3.20 -164.38 -0.53 -14.64 16 10 C 0.18 4.24 4.64 -2.73 -0.01 4.23 16 11 C -0.14 -2.61 6.34 -24.32 -0.15 -2.76 16 12 C -0.10 -1.70 3.63 -88.42 -0.32 -2.02 16 13 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -2.02 5.08 -26.77 -0.14 -2.16 16 15 C 0.12 1.90 6.43 -3.77 -0.02 1.88 16 16 N -0.58 -10.73 2.93 -177.46 -0.52 -11.24 16 17 C 0.61 12.40 7.63 -12.52 -0.10 12.31 16 18 O -0.56 -12.61 16.53 5.27 0.09 -12.52 16 19 C -0.26 -4.97 4.99 -105.04 -0.52 -5.50 16 20 C 0.08 1.40 9.21 -17.08 -0.16 1.25 16 21 N -0.28 -5.12 12.64 30.82 0.39 -4.73 16 22 N -0.38 -6.65 4.81 -55.13 -0.27 -6.91 16 23 C 0.14 2.59 7.46 -81.30 -0.61 1.98 16 24 C -0.07 -1.01 6.86 -26.72 -0.18 -1.19 16 25 C -0.15 -1.79 6.93 -25.19 -0.17 -1.96 16 26 C 0.13 1.67 7.78 -2.91 -0.02 1.65 16 27 C 0.09 1.61 4.66 -6.19 -0.03 1.58 16 28 C 0.15 2.98 3.03 -68.28 -0.21 2.77 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 1.05 7.59 -51.93 -0.39 0.65 16 32 H 0.05 1.20 7.10 -51.93 -0.37 0.83 16 33 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.65 6.98 -51.92 -0.36 1.29 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.47 7.06 -51.93 -0.37 1.10 16 39 H 0.19 2.78 6.64 -52.49 -0.35 2.43 16 40 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.10 1.43 5.51 -51.93 -0.29 1.15 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.85 2.36 -51.93 -0.12 1.72 16 47 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -33.57 352.92 -9.76 -43.33 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.91 Total: 5.22 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.89 Total: 6.13 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -0.35 Total: -63.75 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.57 -9.76 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042083127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.696 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds