Wall clock time and date at job start Tue Mar 31 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47042 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47091 * 120.00428 * 3 2 1 6 6 H 1.48504 * 109.46917 * 240.00472 * 3 2 1 7 7 C 1.38813 * 119.99909 * 180.27983 * 2 1 3 8 8 H 1.07998 * 119.99760 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.47438 * 126.06216 * 359.69964 * 9 7 2 11 11 C 1.54514 * 107.13783 * 178.22508 * 10 9 7 12 12 C 1.56027 * 102.70862 * 337.53417 * 11 10 9 13 13 H 1.08998 * 112.85915 * 156.84884 * 12 11 10 14 14 C 1.53090 * 107.06988 * 281.16879 * 12 11 10 15 15 C 1.52843 * 110.57436 * 164.90203 * 14 12 11 16 16 N 1.47141 * 107.98302 * 302.65779 * 15 14 12 17 17 C 1.34776 * 121.21750 * 237.30541 * 16 15 14 18 18 O 1.21605 * 120.00092 * 357.83085 * 17 16 15 19 19 C 1.47426 * 120.00557 * 177.82979 * 17 16 15 20 20 C 1.41210 * 126.43303 * 35.95343 * 19 17 16 21 21 N 1.30293 * 108.02822 * 179.97438 * 20 19 17 22 22 N 1.40517 * 109.01863 * 359.91369 * 21 20 19 23 23 C 1.34024 * 108.16398 * 359.92674 * 22 21 20 24 24 C 1.51401 * 110.33728 * 179.47205 * 23 22 21 25 25 C 1.54566 * 104.20451 * 343.95262 * 24 23 22 26 26 C 1.47249 * 140.81775 * 180.29600 * 22 21 20 27 27 C 1.44083 * 117.56534 * 56.69257 * 16 15 14 28 28 C 1.46463 * 126.06011 * 180.02562 * 9 7 2 29 29 H 1.09006 * 108.42749 * 90.11278 * 28 9 7 30 30 H 0.96999 * 119.99790 * 359.72572 * 1 2 3 31 31 H 1.09001 * 109.89926 * 297.75332 * 10 9 7 32 32 H 1.09005 * 109.89949 * 58.98345 * 10 9 7 33 33 H 1.09005 * 110.92852 * 219.13532 * 11 10 9 34 34 H 1.09003 * 110.70790 * 95.83879 * 11 10 9 35 35 H 1.08994 * 109.26221 * 285.19045 * 14 12 11 36 36 H 1.09007 * 109.25523 * 44.62864 * 14 12 11 37 37 H 1.09002 * 109.75610 * 62.28183 * 15 14 12 38 38 H 1.09000 * 109.75972 * 182.97922 * 15 14 12 39 39 H 1.07994 * 125.98897 * 359.89875 * 20 19 17 40 40 H 1.09002 * 110.64347 * 225.17482 * 24 23 22 41 41 H 1.08992 * 110.40108 * 102.60320 * 24 23 22 42 42 H 1.09007 * 110.98631 * 266.71070 * 25 24 23 43 43 H 1.09000 * 111.02574 * 142.91436 * 25 24 23 44 44 H 1.09003 * 110.22800 * 316.06028 * 26 22 21 45 45 H 1.08997 * 110.23425 * 78.01921 * 26 22 21 46 46 H 1.09003 * 108.86006 * 187.16678 * 27 16 15 47 47 H 1.09008 * 108.06678 * 68.69510 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0063 9 7 1.3256 -2.3880 -0.0111 10 6 -0.1405 -2.5437 -0.0050 11 6 -0.4377 -4.0590 -0.0603 12 6 0.8717 -4.6434 -0.6754 13 1 1.0213 -5.6952 -0.4318 14 6 0.8092 -4.3949 -2.1847 15 6 2.1864 -4.5889 -2.8186 16 7 3.1264 -3.6742 -2.1517 17 6 3.8291 -2.7620 -2.8521 18 8 3.7219 -2.7103 -4.0623 19 6 4.7277 -1.8268 -2.1512 20 6 5.5107 -2.1117 -1.0112 21 7 6.1664 -1.0318 -0.6922 22 7 5.8412 -0.0127 -1.6034 23 6 4.9664 -0.5082 -2.4896 24 6 4.5713 0.5567 -3.4907 25 6 5.0220 1.8810 -2.8334 26 6 6.1500 1.3966 -1.8975 27 6 3.2581 -3.7802 -0.7208 28 6 1.9199 -3.7266 -0.0171 29 1 2.0578 -4.0470 1.0157 30 1 -0.4850 0.8400 0.0040 31 1 -0.5554 -2.1149 0.9072 32 1 -0.5696 -2.0513 -0.8778 33 1 -1.2928 -4.2649 -0.7043 34 1 -0.6053 -4.4557 0.9410 35 1 0.1044 -5.0936 -2.6353 36 1 0.4700 -3.3751 -2.3674 37 1 2.5138 -5.6193 -2.6801 38 1 2.1381 -4.3577 -3.8827 39 1 5.5571 -3.0583 -0.4935 40 1 3.4925 0.5559 -3.6470 41 1 5.0929 0.4025 -4.4352 42 1 4.2085 2.3310 -2.2642 43 1 5.4055 2.5772 -3.5793 44 1 6.1539 1.9815 -0.9777 45 1 7.1149 1.4745 -2.3985 46 1 3.8845 -2.9630 -0.3631 47 1 3.7443 -4.7294 -0.4955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042083127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:17 Heat of formation + Delta-G solvation = 78.892610 kcal Electronic energy + Delta-G solvation = -31103.373995 eV Core-core repulsion = 27288.516015 eV Total energy + Delta-G solvation = -3814.857980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -42.88464 -41.20729 -39.39127 -37.36209 -36.40367 -34.77190 -33.08060 -31.92048 -30.60665 -30.39530 -30.16980 -28.28025 -26.38789 -25.60097 -24.06550 -23.28432 -22.58921 -21.81696 -21.54647 -20.60664 -19.55431 -18.58200 -18.02897 -17.74489 -17.00415 -16.68914 -16.25903 -15.87754 -15.82712 -15.71350 -15.34517 -15.06634 -15.03671 -14.59012 -14.25759 -14.06100 -13.98280 -13.92065 -13.65854 -13.20393 -13.08753 -12.98986 -12.91093 -12.65240 -12.59493 -12.56030 -12.30141 -12.12169 -11.96138 -11.83220 -11.58646 -11.36802 -11.25270 -11.05323 -10.74414 -10.56600 -10.21474 -9.64507 -9.30735 -8.74759 -7.76310 -5.07023 0.63780 1.21168 1.27673 1.32649 1.40138 1.45545 2.04449 2.52155 2.56536 3.05849 3.41846 3.46114 3.58167 3.65646 3.82573 3.88260 3.91919 4.07430 4.13087 4.17100 4.27781 4.37969 4.43490 4.46681 4.48613 4.53616 4.62994 4.71516 4.73693 4.76384 4.83004 4.88880 4.90495 4.94602 5.02435 5.05918 5.17422 5.23952 5.31123 5.45017 5.56021 5.65878 5.72058 5.74040 5.80622 5.84903 6.27273 6.59315 6.66658 7.18256 7.33185 7.89006 8.54289 9.34530 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.007045 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.250024 B = 3973.641137 C = 5323.785759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.933 3.067 4 H -0.308 1.308 5 H -0.299 1.299 6 H -0.230 1.230 7 C -0.191 4.191 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.188 3.812 11 C -0.131 4.131 12 C -0.085 4.085 13 H 0.123 0.877 14 C -0.114 4.114 15 C 0.115 3.885 16 N -0.585 5.585 17 C 0.600 3.400 18 O -0.596 6.596 19 C -0.288 4.288 20 C 0.084 3.916 21 N -0.301 5.301 22 N -0.386 5.386 23 C 0.121 3.879 24 C -0.071 4.071 25 C -0.134 4.134 26 C 0.118 3.882 27 C 0.092 3.908 28 C 0.140 3.860 29 H 0.037 0.963 30 H 0.237 0.763 31 H -0.003 1.003 32 H 0.001 0.999 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.026 0.974 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.218 0.782 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.757 -5.721 -4.848 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.764 3.236 4 H -0.235 1.235 5 H -0.227 1.227 6 H -0.155 1.155 7 C -0.320 4.320 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.063 3.937 11 C -0.169 4.169 12 C -0.105 4.105 13 H 0.141 0.859 14 C -0.152 4.152 15 C -0.006 4.006 16 N -0.314 5.314 17 C 0.391 3.609 18 O -0.479 6.479 19 C -0.302 4.302 20 C -0.102 4.102 21 N -0.119 5.119 22 N -0.166 5.166 23 C -0.013 4.013 24 C -0.110 4.110 25 C -0.171 4.171 26 C 0.000 4.000 27 C -0.032 4.032 28 C 0.033 3.967 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.094 0.906 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.167 0.833 44 H 0.115 0.885 45 H 0.143 0.857 46 H 0.103 0.897 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.691 -4.810 -4.495 12.556 hybrid contribution -0.978 1.112 0.021 1.481 sum 9.713 -3.699 -4.474 11.315 Atomic orbital electron populations 1.70183 1.06052 1.24166 1.60313 1.25391 0.96240 1.00302 1.04543 0.85882 0.77829 0.80514 0.79342 1.23475 1.22675 1.15536 1.19091 0.90339 0.83201 1.39412 0.90492 1.44493 1.01873 1.00648 1.85947 1.20913 0.84134 0.92064 0.96634 1.23015 0.97912 0.95132 1.00823 1.22432 0.94372 0.99457 0.94191 0.85869 1.21726 0.96936 1.00969 0.95606 1.21664 0.88255 0.93673 0.97051 1.47072 1.41423 1.34907 1.07994 1.17440 0.79021 0.78862 0.85615 1.90640 1.69322 1.72632 1.15272 1.19369 1.11316 0.94997 1.04552 1.24390 0.93594 0.98357 0.93839 1.77021 1.25747 0.95644 1.13531 1.50301 1.33820 1.11518 1.20936 1.22800 0.91483 0.94030 0.92974 1.21056 1.02928 0.90122 0.96920 1.23178 0.97727 0.96862 0.99371 1.22821 1.01468 0.74258 1.01503 1.21526 0.98558 1.03382 0.79745 1.21061 0.92956 0.85888 0.96775 0.94555 0.95418 0.98442 0.98069 0.90770 0.91097 0.88842 0.95518 0.87878 0.91116 0.76557 0.90581 0.86153 0.90302 0.83350 0.88480 0.85698 0.89702 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.93 10.38 21.65 0.22 -58.70 16 2 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 3 Si 0.93 45.24 29.55 68.60 2.03 47.26 16 4 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.23 -9.65 4.12 99.48 0.41 -9.24 16 7 C -0.19 -10.34 9.70 84.03 0.82 -9.52 16 8 H 0.08 4.11 5.59 -2.91 -0.02 4.09 16 9 N -0.60 -29.42 3.20 -673.97 -2.16 -31.58 16 10 C 0.19 9.21 4.64 86.71 0.40 9.61 16 11 C -0.13 -4.52 6.34 32.16 0.20 -4.32 16 12 C -0.09 -2.54 3.63 -9.37 -0.03 -2.57 16 13 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 14 C -0.11 -3.55 5.08 30.57 0.16 -3.40 16 15 C 0.12 3.45 6.43 86.20 0.55 4.00 16 16 N -0.58 -20.47 2.93 -833.61 -2.44 -22.91 16 17 C 0.60 24.31 7.63 86.66 0.66 24.97 16 18 O -0.60 -27.04 16.53 -4.05 -0.07 -27.11 16 19 C -0.29 -11.01 4.99 -20.13 -0.10 -11.11 16 20 C 0.08 2.87 9.21 85.65 0.79 3.66 16 21 N -0.30 -10.72 12.64 -56.41 -0.71 -11.43 16 22 N -0.39 -12.82 4.81 -328.35 -1.58 -14.39 16 23 C 0.12 4.38 7.46 42.44 0.32 4.69 16 24 C -0.07 -2.09 6.86 30.60 0.21 -1.88 16 25 C -0.13 -2.91 6.93 31.59 0.22 -2.70 16 26 C 0.12 2.71 7.78 86.70 0.67 3.38 16 27 C 0.09 2.96 4.66 86.27 0.40 3.37 16 28 C 0.14 5.11 3.03 44.79 0.14 5.24 16 29 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.00 -0.15 7.59 -2.39 -0.02 -0.17 16 32 H 0.00 0.06 7.10 -2.38 -0.02 0.04 16 33 H 0.07 2.34 7.99 -2.38 -0.02 2.32 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.03 1.11 6.98 -2.38 -0.02 1.09 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.35 7.06 -2.39 -0.02 2.33 16 39 H 0.22 5.82 6.64 -2.91 -0.02 5.80 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.08 2.08 5.51 -2.38 -0.01 2.07 16 43 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.09 3.02 2.36 -2.39 -0.01 3.01 16 47 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -80.49 352.92 1.86 -78.63 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.70 Total: 20.56 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 5.87 Total: 19.68 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -6.67 Total: -139.02 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.07 Total: -27.11 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -80.49 1.86 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042083127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.519 kcal (2) G-P(sol) polarization free energy of solvation -80.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds