Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00031 * 2 1 4 4 C 1.53005 * 109.46768 * 269.93494 * 3 2 1 5 5 H 1.08991 * 112.74292 * 46.59670 * 4 3 2 6 6 C 1.53496 * 113.46562 * 275.77518 * 4 3 2 7 7 C 1.53496 * 83.34332 * 219.15427 * 6 4 3 8 8 N 1.47067 * 87.98844 * 26.07023 * 7 6 4 9 9 C 1.36932 * 136.05957 * 152.91494 * 8 7 6 10 10 H 1.08007 * 119.99895 * 186.50769 * 9 8 7 11 11 C 1.38815 * 120.00267 * 6.50562 * 9 8 7 12 12 N 1.31620 * 119.99428 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47397 * 89.99813 * 13 11 9 15 15 H 1.48495 * 109.47305 * 210.00161 * 13 11 9 16 16 H 1.48505 * 109.46924 * 329.99786 * 13 11 9 17 17 C 1.34775 * 120.00003 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00062 * 184.36679 * 17 2 1 19 19 C 1.50706 * 119.99822 * 4.36969 * 17 2 1 20 20 H 1.08998 * 109.63099 * 314.24401 * 19 17 2 21 21 C 1.53312 * 109.63462 * 193.83595 * 19 17 2 22 22 C 1.52815 * 108.49934 * 170.47653 * 21 19 17 23 23 C 1.50438 * 110.43657 * 51.05485 * 22 21 19 24 24 N 1.32892 * 118.52771 * 162.44554 * 23 22 21 25 25 C 1.31600 * 121.06651 * 179.77870 * 24 23 22 26 26 N 1.31814 * 121.66586 * 359.97438 * 25 24 23 27 27 C 1.32187 * 120.64497 * 0.09037 * 26 25 24 28 28 C 1.37767 * 122.58563 * 342.40557 * 23 22 21 29 29 C 1.50345 * 122.80980 * 0.37248 * 28 23 22 30 30 H 1.09000 * 109.47543 * 215.34493 * 1 2 3 31 31 H 1.09003 * 109.47019 * 335.35400 * 1 2 3 32 32 H 1.09005 * 109.47004 * 95.34411 * 1 2 3 33 33 H 1.08996 * 109.47504 * 29.93279 * 3 2 1 34 34 H 1.08999 * 109.47300 * 149.93972 * 3 2 1 35 35 H 1.09001 * 114.21150 * 332.73503 * 6 4 3 36 36 H 1.08997 * 114.20823 * 105.56883 * 6 4 3 37 37 H 1.09007 * 113.46944 * 271.28847 * 7 6 4 38 38 H 1.09004 * 113.47325 * 140.85356 * 7 6 4 39 39 H 0.97000 * 119.99306 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.63153 * 50.77556 * 21 19 17 41 41 H 1.09002 * 109.79720 * 290.27521 * 21 19 17 42 42 H 1.08998 * 109.31174 * 171.35274 * 22 21 19 43 43 H 1.09003 * 109.30462 * 290.75951 * 22 21 19 44 44 H 1.08002 * 119.16894 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.36348 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.30914 * 222.36606 * 29 28 23 47 47 H 1.08998 * 109.14692 * 102.85905 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4539 1.7095 -1.4426 5 1 1.5667 1.6319 -2.0709 6 6 3.7027 1.0694 -2.0645 7 6 3.8915 2.4627 -2.6803 8 7 3.1327 3.0101 -1.5456 9 6 3.0805 4.2051 -0.8791 10 1 2.4809 4.2994 0.0143 11 6 3.7984 5.2953 -1.3514 12 7 4.5287 5.1804 -2.4403 13 14 3.7278 6.9252 -0.4417 14 1 4.8074 6.9708 0.5769 15 1 3.9103 8.0390 -1.4067 16 1 2.4093 7.0616 0.2280 17 6 2.1389 -1.1672 0.0005 18 8 3.3490 -1.1687 0.0805 19 6 1.3886 -2.4705 -0.0983 20 1 0.5384 -2.4562 0.5835 21 6 2.3218 -3.6310 0.2659 22 6 1.4862 -4.9044 0.3904 23 6 0.6257 -5.0893 -0.8297 24 7 0.1080 -6.2905 -1.0651 25 6 -0.6552 -6.5071 -2.1150 26 7 -0.9388 -5.5484 -2.9741 27 6 -0.4582 -4.3286 -2.8052 28 6 0.3543 -4.0638 -1.7086 29 6 0.8993 -2.6738 -1.5319 30 1 -0.3634 -0.8382 0.5945 31 1 -0.3633 0.9341 0.4286 32 1 -0.3633 -0.0957 -1.0233 33 1 1.6080 2.0287 0.5128 34 1 3.1494 1.1387 0.5148 35 1 4.4703 0.7926 -1.3417 36 1 3.4886 0.2852 -2.7905 37 1 3.3876 2.5854 -3.6391 38 1 4.9312 2.7892 -2.7052 39 1 5.0306 5.9421 -2.7702 40 1 2.8134 -3.4213 1.2159 41 1 3.0721 -3.7602 -0.5141 42 1 2.1501 -5.7623 0.4966 43 1 0.8501 -4.8332 1.2727 44 1 -1.0595 -7.4954 -2.2770 45 1 -0.6938 -3.5463 -3.5116 46 1 0.1155 -1.9488 -1.7513 47 1 1.7307 -2.5254 -2.2209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085638441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = 68.319155 kcal Electronic energy + Delta-G solvation = -28511.360908 eV Core-core repulsion = 24696.044428 eV Total energy + Delta-G solvation = -3815.316480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70882 -40.09876 -38.10239 -36.79845 -35.32149 -34.35767 -32.21048 -31.76031 -30.80877 -28.46140 -27.87003 -26.56413 -25.41817 -24.44534 -23.39894 -23.31313 -22.37391 -20.71743 -19.18721 -18.95573 -17.90747 -17.39911 -17.03758 -16.56652 -16.09019 -15.70732 -15.37668 -14.81130 -14.63966 -14.40378 -14.16728 -14.03277 -13.91032 -13.62004 -13.51797 -13.40609 -12.82832 -12.70029 -12.48414 -12.30817 -12.02577 -11.98230 -11.45293 -11.39777 -11.21175 -11.15157 -11.04841 -10.86409 -10.76519 -10.67679 -10.39970 -9.85923 -9.79806 -9.63734 -9.53760 -9.48101 -9.34366 -8.78972 -8.31328 -6.85816 -5.76787 -3.08866 0.57680 0.72148 2.69199 3.09327 3.38531 3.41824 3.42678 3.45111 3.67166 3.88324 4.07660 4.21810 4.29534 4.42374 4.48234 4.63416 4.82419 4.94028 4.99148 5.09749 5.11930 5.19605 5.23746 5.26501 5.37378 5.45222 5.48646 5.52046 5.58675 5.61676 5.75722 5.79503 5.90533 5.96783 6.00297 6.07381 6.11682 6.40627 6.51958 6.66151 6.66564 6.77387 6.82881 7.26814 7.46106 7.56084 7.59401 7.76586 7.98561 8.31322 9.03609 9.70863 10.66871 11.41436 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.002524 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.692736 B =11089.783780 C =11329.778363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.114 3.886 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.157 4.157 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.517 3.483 18 O -0.526 6.526 19 C -0.107 4.107 20 H 0.097 0.903 21 C -0.100 4.100 22 C -0.073 4.073 23 C 0.181 3.819 24 N -0.522 5.522 25 C 0.287 3.713 26 N -0.523 5.523 27 C 0.152 3.848 28 C -0.175 4.175 29 C -0.064 4.064 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.254 0.746 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.195 0.805 45 H 0.170 0.830 46 H 0.089 0.911 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 -21.232 3.569 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C -0.009 4.009 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.195 4.195 7 C 0.031 3.969 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.304 3.696 18 O -0.402 6.402 19 C -0.129 4.129 20 H 0.115 0.885 21 C -0.138 4.138 22 C -0.111 4.111 23 C 0.037 3.963 24 N -0.236 5.236 25 C -0.001 4.001 26 N -0.236 5.236 27 C -0.016 4.016 28 C -0.179 4.179 29 C -0.102 4.102 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.211 0.789 45 H 0.187 0.813 46 H 0.108 0.892 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.193 -21.764 3.529 24.727 hybrid contribution -0.103 1.855 0.303 1.882 sum -11.295 -19.909 3.832 23.209 Atomic orbital electron populations 1.21849 0.80155 1.03027 1.01630 1.47883 1.06653 1.06648 1.73099 1.21931 0.97336 0.82323 0.99265 1.22419 0.94707 0.87476 0.93135 0.94385 1.23646 0.98668 0.97062 1.00127 1.21959 0.97751 0.87139 0.90071 1.45630 1.43491 1.08757 1.34787 1.18865 1.25390 0.85586 1.04792 0.90288 1.24825 1.00281 0.97784 0.97478 1.69854 1.33162 1.30218 1.23193 0.86150 0.77690 0.83527 0.78559 1.21503 1.21656 1.20705 1.20296 0.87933 0.84762 0.76651 1.90721 1.13792 1.87015 1.48670 1.21370 0.99656 0.93706 0.98155 0.88539 1.21435 0.97022 0.91234 1.04109 1.20483 0.97360 0.99646 0.93601 1.21386 0.92257 0.87764 0.94914 1.68400 1.10807 1.23031 1.21362 1.24893 0.90847 0.98784 0.85570 1.68424 1.23494 1.01427 1.30249 1.23323 0.89889 0.94137 0.94204 1.21132 1.01022 0.98067 0.97649 1.20282 1.01742 0.91911 0.96265 0.91642 0.90647 0.92561 0.91011 0.89496 0.89914 0.93439 0.95836 0.91876 0.93645 0.89612 0.90263 0.88698 0.89050 0.78880 0.81331 0.89221 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.52 59.85 0.57 1.26 16 2 N -0.61 -7.96 2.87 -181.57 -0.52 -8.48 16 3 C 0.11 1.97 5.41 -4.04 -0.02 1.95 16 4 C 0.13 2.62 4.31 -72.39 -0.31 2.31 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.16 -3.15 7.53 -26.22 -0.20 -3.35 16 7 C 0.16 3.80 7.25 -8.51 -0.06 3.73 16 8 N -0.60 -15.29 3.64 -176.99 -0.64 -15.94 16 9 C -0.22 -6.04 10.55 -15.06 -0.16 -6.20 16 10 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.52 11.68 55.49 0.65 -26.87 16 13 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.52 6.79 6.87 -10.98 -0.08 6.71 16 18 O -0.53 -9.00 14.95 5.56 0.08 -8.92 16 19 C -0.11 -0.97 1.81 -91.69 -0.17 -1.14 16 20 H 0.10 0.70 6.54 -51.93 -0.34 0.36 16 21 C -0.10 -0.88 4.61 -26.67 -0.12 -1.00 16 22 C -0.07 -0.56 5.96 -28.11 -0.17 -0.72 16 23 C 0.18 1.67 6.62 -82.43 -0.55 1.13 16 24 N -0.52 -5.21 10.32 -11.00 -0.11 -5.33 16 25 C 0.29 2.59 12.29 -92.30 -1.13 1.46 16 26 N -0.52 -5.11 10.44 -14.54 -0.15 -5.26 16 27 C 0.15 1.30 10.94 -17.11 -0.19 1.11 16 28 C -0.17 -1.50 5.73 -104.68 -0.60 -2.10 16 29 C -0.06 -0.52 4.89 -28.14 -0.14 -0.66 16 30 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 31 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.06 0.45 7.13 -51.93 -0.37 0.08 16 33 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 34 H 0.09 1.71 7.15 -51.93 -0.37 1.34 16 35 H 0.08 1.77 7.78 -51.93 -0.40 1.37 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.69 7.43 -51.93 -0.39 1.31 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.09 0.78 8.04 -51.93 -0.42 0.37 16 41 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.19 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.09 0.61 6.47 -51.93 -0.34 0.28 16 47 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -34.31 376.34 -10.58 -44.89 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.12 Total: -0.97 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -3.42 Total: 4.21 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.78 Total: -61.87 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.31 -10.58 -44.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085638441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.209 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds