Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00031 * 2 1 4 4 C 1.53005 * 109.46768 * 269.93494 * 3 2 1 5 5 H 1.08991 * 112.74292 * 46.59670 * 4 3 2 6 6 C 1.53496 * 113.46562 * 275.77518 * 4 3 2 7 7 C 1.53496 * 83.34332 * 219.15427 * 6 4 3 8 8 N 1.47067 * 87.98844 * 26.07023 * 7 6 4 9 9 C 1.36932 * 136.05957 * 152.91494 * 8 7 6 10 10 H 1.08007 * 119.99895 * 186.50769 * 9 8 7 11 11 C 1.38815 * 120.00267 * 6.50562 * 9 8 7 12 12 N 1.31620 * 119.99428 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47397 * 89.99813 * 13 11 9 15 15 H 1.48495 * 109.47305 * 210.00161 * 13 11 9 16 16 H 1.48505 * 109.46924 * 329.99786 * 13 11 9 17 17 C 1.34775 * 120.00003 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00062 * 184.36679 * 17 2 1 19 19 C 1.50706 * 119.99822 * 4.36969 * 17 2 1 20 20 H 1.08998 * 109.63099 * 314.24401 * 19 17 2 21 21 C 1.53312 * 109.63462 * 193.83595 * 19 17 2 22 22 C 1.52815 * 108.49934 * 170.47653 * 21 19 17 23 23 C 1.50438 * 110.43657 * 51.05485 * 22 21 19 24 24 N 1.32892 * 118.52771 * 162.44554 * 23 22 21 25 25 C 1.31600 * 121.06651 * 179.77870 * 24 23 22 26 26 N 1.31814 * 121.66586 * 359.97438 * 25 24 23 27 27 C 1.32187 * 120.64497 * 0.09037 * 26 25 24 28 28 C 1.37767 * 122.58563 * 342.40557 * 23 22 21 29 29 C 1.50345 * 122.80980 * 0.37248 * 28 23 22 30 30 H 1.09000 * 109.47543 * 215.34493 * 1 2 3 31 31 H 1.09003 * 109.47019 * 335.35400 * 1 2 3 32 32 H 1.09005 * 109.47004 * 95.34411 * 1 2 3 33 33 H 1.08996 * 109.47504 * 29.93279 * 3 2 1 34 34 H 1.08999 * 109.47300 * 149.93972 * 3 2 1 35 35 H 1.09001 * 114.21150 * 332.73503 * 6 4 3 36 36 H 1.08997 * 114.20823 * 105.56883 * 6 4 3 37 37 H 1.09007 * 113.46944 * 271.28847 * 7 6 4 38 38 H 1.09004 * 113.47325 * 140.85356 * 7 6 4 39 39 H 0.97000 * 119.99306 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.63153 * 50.77556 * 21 19 17 41 41 H 1.09002 * 109.79720 * 290.27521 * 21 19 17 42 42 H 1.08998 * 109.31174 * 171.35274 * 22 21 19 43 43 H 1.09003 * 109.30462 * 290.75951 * 22 21 19 44 44 H 1.08002 * 119.16894 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.36348 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.30914 * 222.36606 * 29 28 23 47 47 H 1.08998 * 109.14692 * 102.85905 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4539 1.7095 -1.4426 5 1 1.5667 1.6319 -2.0709 6 6 3.7027 1.0694 -2.0645 7 6 3.8915 2.4627 -2.6803 8 7 3.1327 3.0101 -1.5456 9 6 3.0805 4.2051 -0.8791 10 1 2.4809 4.2994 0.0143 11 6 3.7984 5.2953 -1.3514 12 7 4.5287 5.1804 -2.4403 13 14 3.7278 6.9252 -0.4417 14 1 4.8074 6.9708 0.5769 15 1 3.9103 8.0390 -1.4067 16 1 2.4093 7.0616 0.2280 17 6 2.1389 -1.1672 0.0005 18 8 3.3490 -1.1687 0.0805 19 6 1.3886 -2.4705 -0.0983 20 1 0.5384 -2.4562 0.5835 21 6 2.3218 -3.6310 0.2659 22 6 1.4862 -4.9044 0.3904 23 6 0.6257 -5.0893 -0.8297 24 7 0.1080 -6.2905 -1.0651 25 6 -0.6552 -6.5071 -2.1150 26 7 -0.9388 -5.5484 -2.9741 27 6 -0.4582 -4.3286 -2.8052 28 6 0.3543 -4.0638 -1.7086 29 6 0.8993 -2.6738 -1.5319 30 1 -0.3634 -0.8382 0.5945 31 1 -0.3633 0.9341 0.4286 32 1 -0.3633 -0.0957 -1.0233 33 1 1.6080 2.0287 0.5128 34 1 3.1494 1.1387 0.5148 35 1 4.4703 0.7926 -1.3417 36 1 3.4886 0.2852 -2.7905 37 1 3.3876 2.5854 -3.6391 38 1 4.9312 2.7892 -2.7052 39 1 5.0306 5.9421 -2.7702 40 1 2.8134 -3.4213 1.2159 41 1 3.0721 -3.7602 -0.5141 42 1 2.1501 -5.7623 0.4966 43 1 0.8501 -4.8332 1.2727 44 1 -1.0595 -7.4954 -2.2770 45 1 -0.6938 -3.5463 -3.5116 46 1 0.1155 -1.9488 -1.7513 47 1 1.7307 -2.5254 -2.2209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085638441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 47.598150 kcal Electronic energy + Delta-G solvation = -28512.259438 eV Core-core repulsion = 24696.044428 eV Total energy + Delta-G solvation = -3816.215010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37916 -41.16119 -39.73254 -37.63621 -36.44891 -35.02511 -34.26187 -32.45942 -31.59619 -29.92656 -29.64223 -27.44066 -26.17788 -25.42236 -25.22946 -23.96226 -23.77585 -21.60976 -20.99610 -19.88545 -18.76211 -18.59273 -18.09718 -17.65074 -17.23719 -17.02568 -16.38086 -16.12544 -15.84398 -15.66741 -15.22480 -14.87413 -14.82819 -14.74996 -14.49584 -14.21640 -14.01911 -13.81222 -13.58853 -13.43651 -13.17644 -13.05034 -12.97538 -12.80826 -12.65384 -12.51372 -12.23329 -12.07099 -11.90176 -11.81732 -11.78333 -11.65069 -11.33953 -11.11698 -10.85490 -10.60402 -10.17748 -10.14347 -9.54807 -8.89042 -7.90051 -5.23062 -0.05744 0.07893 1.45481 1.48212 1.56147 1.68426 2.04804 2.49577 2.77482 3.05804 3.27087 3.32241 3.38713 3.49122 3.54176 3.65094 3.77468 3.88138 3.96460 4.16219 4.26679 4.32244 4.33066 4.37544 4.45621 4.47225 4.50547 4.57446 4.64285 4.73833 4.79358 4.88151 4.88413 4.91822 4.97058 5.03551 5.12175 5.12841 5.14507 5.22817 5.29174 5.49494 5.50165 5.55413 5.75716 5.93445 6.02601 6.52819 6.90601 7.12602 7.28573 7.61552 8.63367 9.29133 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.002524 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.692736 B =11089.783780 C =11329.778363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.129 3.871 4 C 0.139 3.861 5 H 0.056 0.944 6 C -0.130 4.130 7 C 0.152 3.848 8 N -0.630 5.630 9 C -0.221 4.221 10 H 0.091 0.909 11 C -0.073 4.073 12 N -0.958 5.958 13 Si 0.979 3.021 14 H -0.288 1.288 15 H -0.297 1.297 16 H -0.263 1.263 17 C 0.514 3.486 18 O -0.573 6.573 19 C -0.096 4.096 20 H 0.125 0.875 21 C -0.096 4.096 22 C -0.065 4.065 23 C 0.169 3.831 24 N -0.540 5.540 25 C 0.280 3.720 26 N -0.541 5.541 27 C 0.149 3.851 28 C -0.175 4.175 29 C -0.057 4.057 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.026 0.974 39 H 0.247 0.753 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.217 0.783 45 H 0.192 0.808 46 H 0.110 0.890 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 -22.386 4.490 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C 0.005 3.995 4 C 0.032 3.968 5 H 0.073 0.927 6 C -0.168 4.168 7 C 0.026 3.974 8 N -0.356 5.356 9 C -0.349 4.349 10 H 0.109 0.891 11 C -0.265 4.265 12 N -0.607 5.607 13 Si 0.807 3.193 14 H -0.215 1.215 15 H -0.224 1.224 16 H -0.187 1.187 17 C 0.303 3.697 18 O -0.451 6.451 19 C -0.117 4.117 20 H 0.142 0.858 21 C -0.134 4.134 22 C -0.103 4.103 23 C 0.026 3.974 24 N -0.254 5.254 25 C -0.007 4.007 26 N -0.255 5.255 27 C -0.018 4.018 28 C -0.179 4.179 29 C -0.095 4.095 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.233 0.767 45 H 0.209 0.791 46 H 0.128 0.872 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.002 -22.960 4.473 27.262 hybrid contribution 0.741 2.114 0.000 2.240 sum -13.260 -20.846 4.474 25.108 Atomic orbital electron populations 1.22179 0.77125 1.04627 1.03463 1.47904 1.08356 1.04990 1.72750 1.21423 0.96815 0.84547 0.96726 1.22503 0.94661 0.84408 0.95190 0.92686 1.23361 0.98319 0.95493 0.99677 1.21930 0.95590 0.89705 0.90206 1.45958 1.44878 1.09843 1.34931 1.19323 1.24252 0.86319 1.04998 0.89124 1.25706 1.00671 1.01456 0.98692 1.70052 1.34689 1.30727 1.25212 0.85070 0.78274 0.78896 0.77068 1.21539 1.22372 1.18715 1.21017 0.87582 0.85825 0.75268 1.90712 1.16079 1.87702 1.50628 1.21346 0.99844 0.90930 0.99551 0.85770 1.21360 0.96869 0.91941 1.03236 1.20437 0.97229 0.98840 0.93746 1.21662 0.92359 0.87898 0.95513 1.68437 1.11522 1.23448 1.21992 1.25398 0.90456 0.99704 0.85158 1.68487 1.24223 1.02063 1.30704 1.23736 0.89281 0.94358 0.94433 1.21118 1.01131 0.97969 0.97699 1.20235 1.01881 0.92266 0.95138 0.88536 0.90427 0.90837 0.90678 0.92456 0.91490 0.90593 0.96303 0.95572 0.94432 0.90093 0.92033 0.88515 0.87358 0.76654 0.79110 0.87159 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 9.52 127.77 1.22 2.15 16 2 N -0.61 -14.36 2.87 -846.75 -2.43 -16.79 16 3 C 0.13 4.32 5.41 86.38 0.47 4.79 16 4 C 0.14 5.44 4.31 41.79 0.18 5.62 16 5 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 6 C -0.13 -5.22 7.53 30.93 0.23 -4.99 16 7 C 0.15 7.55 7.25 83.18 0.60 8.15 16 8 N -0.63 -32.32 3.64 -713.86 -2.60 -34.92 16 9 C -0.22 -12.22 10.55 84.04 0.89 -11.33 16 10 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 11 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 12 N -0.96 -59.28 11.68 21.65 0.25 -59.02 16 13 Si 0.98 45.77 29.55 68.60 2.03 47.79 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 C 0.51 12.54 6.87 87.66 0.60 13.15 16 18 O -0.57 -19.43 14.95 -3.02 -0.05 -19.47 16 19 C -0.10 -1.46 1.81 -11.49 -0.02 -1.48 16 20 H 0.12 1.25 6.54 -2.39 -0.02 1.23 16 21 C -0.10 -1.54 4.61 30.64 0.14 -1.40 16 22 C -0.07 -0.85 5.96 29.70 0.18 -0.67 16 23 C 0.17 2.76 6.62 42.20 0.28 3.04 16 24 N -0.54 -9.77 10.32 -188.73 -1.95 -11.71 16 25 C 0.28 4.54 12.29 180.94 2.22 6.77 16 26 N -0.54 -9.45 10.44 -199.93 -2.09 -11.54 16 27 C 0.15 2.15 10.94 84.83 0.93 3.08 16 28 C -0.18 -2.55 5.73 -19.90 -0.11 -2.66 16 29 C -0.06 -0.75 4.89 29.68 0.15 -0.61 16 30 H 0.10 0.76 6.36 -2.39 -0.02 0.75 16 31 H 0.08 1.09 7.83 -2.39 -0.02 1.07 16 32 H 0.07 0.81 7.13 -2.38 -0.02 0.79 16 33 H 0.07 2.45 7.86 -2.39 -0.02 2.44 16 34 H 0.06 2.27 7.15 -2.39 -0.02 2.25 16 35 H 0.07 2.92 7.78 -2.39 -0.02 2.90 16 36 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.03 1.47 7.43 -2.38 -0.02 1.45 16 39 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 41 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.11 1.01 6.47 -2.39 -0.02 1.00 16 47 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 Total: -1.00 -76.91 376.34 2.55 -74.36 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.97 Total: 11.42 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 8.41 Total: 19.89 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -8.82 Total: -133.99 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -76.91 2.55 -74.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085638441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.959 kcal (2) G-P(sol) polarization free energy of solvation -76.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds