Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99768 * 2 1 4 4 H 1.48507 * 109.47078 * 274.80714 * 3 2 1 5 5 H 1.48495 * 109.47272 * 34.80511 * 3 2 1 6 6 H 1.48497 * 109.46945 * 154.80553 * 3 2 1 7 7 C 1.38813 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99132 * 170.72988 * 7 2 1 9 9 N 1.36925 * 120.00133 * 350.72964 * 7 2 1 10 10 C 1.49650 * 127.84969 * 344.42749 * 9 7 2 11 11 C 1.54385 * 104.52782 * 219.48664 * 10 9 7 12 12 H 1.09000 * 111.26735 * 215.52050 * 11 10 9 13 13 C 1.55409 * 104.78755 * 336.32076 * 11 10 9 14 14 H 1.09008 * 110.66917 * 239.26427 * 13 11 10 15 15 C 1.48161 * 127.83875 * 164.19732 * 9 7 2 16 16 C 1.53273 * 109.51301 * 116.65160 * 13 11 10 17 17 H 1.09004 * 110.93653 * 181.84104 * 16 13 11 18 18 C 1.53320 * 108.74647 * 60.12876 * 16 13 11 19 19 C 1.52933 * 109.59729 * 299.32615 * 18 16 13 20 20 C 1.52976 * 109.08170 * 93.04641 * 11 10 9 21 21 H 1.08998 * 109.64029 * 66.06084 * 20 11 10 22 22 C 1.53613 * 109.81052 * 305.54567 * 20 11 10 23 23 N 1.47632 * 106.74237 * 300.26249 * 22 20 11 24 24 C 1.34776 * 122.06690 * 179.97438 * 23 22 20 25 25 O 1.21280 * 119.99743 * 179.71079 * 24 23 22 26 26 C 1.50698 * 119.99927 * 359.71548 * 24 23 22 27 27 C 1.50700 * 109.46772 * 180.02562 * 26 24 23 28 28 C 1.34668 * 126.59270 * 274.67972 * 27 26 24 29 29 N 1.34120 * 108.02413 * 179.87863 * 28 27 26 30 30 C 1.30508 * 109.25688 * 0.39979 * 29 28 27 31 31 N 1.35042 * 108.69701 * 359.75467 * 30 29 28 32 32 H 0.96997 * 126.39886 * 179.97438 * 31 30 29 33 33 H 0.96995 * 119.99671 * 0.02562 * 1 2 3 34 34 H 1.08996 * 111.08240 * 100.40990 * 10 9 7 35 35 H 1.08999 * 109.81353 * 337.92297 * 10 9 7 36 36 H 1.08998 * 110.40931 * 21.68251 * 15 9 7 37 37 H 1.08998 * 110.40883 * 259.23693 * 15 9 7 38 38 H 1.09001 * 109.45144 * 59.36774 * 18 16 13 39 39 H 1.09001 * 109.45281 * 179.31173 * 18 16 13 40 40 H 1.09001 * 109.37929 * 120.86994 * 19 18 16 41 41 H 1.08996 * 109.38463 * 240.54562 * 19 18 16 42 42 H 1.09001 * 110.13780 * 180.87731 * 22 20 11 43 43 H 1.09004 * 109.85859 * 59.49488 * 22 20 11 44 44 H 1.09000 * 109.46492 * 299.99746 * 26 24 23 45 45 H 1.08997 * 109.47285 * 59.99940 * 26 24 23 46 46 H 1.08008 * 125.98482 * 0.03512 * 28 27 26 47 47 H 1.07994 * 125.64873 * 179.77207 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3961 2.1052 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5949 1.4131 0.5960 7 6 2.0103 -1.2022 0.0005 8 1 3.0797 -1.2082 -0.1501 9 7 1.3391 -2.3801 0.1921 10 6 -0.0461 -2.5715 0.7250 11 6 0.0562 -3.8174 1.6311 12 1 -0.8518 -4.4183 1.5810 13 6 1.2896 -4.5968 1.0959 14 1 1.0027 -5.5988 0.7767 15 6 1.8178 -3.7545 -0.0857 16 6 2.3688 -4.6561 2.1828 17 1 3.2587 -5.1707 1.8203 18 6 1.7944 -5.3759 3.4086 19 6 0.5874 -4.6012 3.9395 20 6 0.3313 -3.3696 3.0678 21 1 -0.5291 -2.8216 3.4518 22 6 1.5749 -2.4686 3.1033 23 7 2.6970 -3.2717 2.5785 24 6 3.9452 -2.7743 2.4733 25 8 4.8405 -3.4693 2.0416 26 6 4.2284 -1.3547 2.8922 27 6 5.6879 -1.0487 2.6752 28 6 6.6976 -1.3061 3.5283 29 7 7.8376 -0.8842 2.9615 30 6 7.5717 -0.3674 1.7930 31 7 6.2415 -0.4501 1.5756 32 1 5.7668 -0.1424 0.7877 33 1 -0.4849 0.8400 -0.0004 34 1 -0.7564 -2.7465 -0.0830 35 1 -0.3409 -1.6999 1.3094 36 1 2.9071 -3.7793 -0.1132 37 1 1.4044 -4.1181 -1.0264 38 1 1.4845 -6.3821 3.1266 39 1 2.5571 -5.4354 4.1851 40 1 -0.2917 -5.2454 3.9228 41 1 0.7827 -4.2849 4.9642 42 1 1.7849 -2.1590 4.1271 43 1 1.4161 -1.5934 2.4732 44 1 3.6219 -0.6724 2.2965 45 1 3.9838 -1.2316 3.9472 46 1 6.6058 -1.7730 4.4979 47 1 8.2956 0.0560 1.1125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089870258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = 56.564345 kcal Electronic energy + Delta-G solvation = -31122.899692 eV Core-core repulsion = 27307.073486 eV Total energy + Delta-G solvation = -3815.826206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.75566 -40.84515 -38.05428 -35.34713 -33.05984 -32.41694 -32.24381 -31.78123 -31.04395 -29.10944 -26.92230 -26.57407 -25.17750 -24.43303 -22.28167 -21.27792 -20.81878 -20.42493 -20.34742 -19.56885 -17.48505 -17.26603 -16.71275 -16.20207 -15.96031 -15.53425 -14.80244 -14.65118 -14.50384 -14.04865 -13.96100 -13.66519 -13.60646 -13.22165 -12.94539 -12.72176 -12.45215 -12.26856 -12.05077 -11.90203 -11.63692 -11.54175 -11.43969 -11.22939 -11.13863 -10.93102 -10.88218 -10.48342 -10.20897 -9.90466 -9.77217 -9.74946 -9.69978 -9.61051 -9.53829 -9.19971 -8.78231 -8.06657 -7.89471 -6.90197 -5.92389 -3.23293 2.31038 3.16209 3.20486 3.22724 3.29700 3.33797 3.45998 3.67253 4.29450 4.84481 4.87681 4.95152 5.00421 5.11127 5.25327 5.28221 5.38057 5.41322 5.44107 5.52782 5.55370 5.63637 5.68401 5.78390 5.81403 5.83209 5.94851 5.97663 6.05522 6.12787 6.15528 6.31368 6.37114 6.44344 6.51089 6.54233 6.58297 6.74939 6.82455 6.86035 6.99605 7.08039 7.23568 7.43327 7.57951 7.64769 8.05209 8.09177 8.30807 8.76725 8.98047 9.61336 10.44537 11.21528 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.006986 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.509531 B = 4006.780450 C = 5886.072344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.007 4.007 3 Si 0.898 3.102 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.210 4.210 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.160 3.840 11 C -0.103 4.103 12 H 0.068 0.932 13 C -0.110 4.110 14 H 0.073 0.927 15 C 0.134 3.866 16 C 0.155 3.845 17 H 0.093 0.907 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.084 4.084 21 H 0.079 0.921 22 C 0.116 3.884 23 N -0.580 5.580 24 C 0.535 3.465 25 O -0.554 6.554 26 C -0.071 4.071 27 C 0.014 3.986 28 C -0.022 4.022 29 N -0.498 5.498 30 C 0.175 3.825 31 N -0.558 5.558 32 H 0.421 0.579 33 H 0.254 0.746 34 H 0.020 0.980 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.163 0.837 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -5.023 7.209 8.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.204 4.204 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.123 4.123 12 H 0.086 0.914 13 C -0.130 4.130 14 H 0.091 0.909 15 C 0.007 3.993 16 C 0.052 3.948 17 H 0.111 0.889 18 C -0.164 4.164 19 C -0.150 4.150 20 C -0.103 4.103 21 H 0.097 0.903 22 C -0.007 4.007 23 N -0.312 5.312 24 C 0.323 3.677 25 O -0.433 6.433 26 C -0.112 4.112 27 C -0.103 4.103 28 C -0.170 4.170 29 N -0.217 5.217 30 C -0.108 4.108 31 N -0.161 5.161 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.124 0.876 46 H 0.180 0.820 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.638 -5.172 7.355 9.370 hybrid contribution -0.804 1.130 -0.980 1.698 sum 1.835 -4.041 6.375 7.767 Atomic orbital electron populations 1.69880 1.04751 1.25138 1.55979 1.24815 0.95517 0.97336 1.02712 0.86363 0.78454 0.84492 0.77782 1.21596 1.21439 1.21081 1.18779 0.90220 0.82418 1.42465 0.91545 1.45175 1.13129 0.99581 1.73307 1.21828 0.86754 0.93979 0.94002 1.22491 0.96207 0.99023 0.94617 0.91404 1.22780 0.95123 0.98612 0.96521 0.90896 1.21600 0.97235 0.86992 0.93426 1.21225 0.97530 0.82465 0.93606 0.88871 1.21905 0.97790 0.98866 0.97864 1.21529 0.97758 0.97070 0.98596 1.21337 0.97471 0.95471 0.96010 0.90294 1.22079 0.85057 0.95997 0.97524 1.48044 1.07659 1.12766 1.62716 1.19967 0.81712 0.88207 0.77795 1.90657 1.44699 1.60739 1.47221 1.20123 0.90745 0.96159 1.04184 1.20589 0.95688 1.04388 0.89593 1.21881 0.87623 1.06400 1.01071 1.70199 1.28839 1.15523 1.07158 1.24788 0.83606 1.05200 0.97224 1.43269 1.09052 1.46321 1.17420 0.74115 0.93589 0.96218 0.89438 0.93593 0.96545 0.91427 0.92197 0.92187 0.92493 0.93202 0.87677 0.86816 0.87563 0.81956 0.77999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.85 10.88 55.49 0.60 -23.25 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.90 19.56 29.56 -169.99 -5.03 14.54 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.21 -5.05 9.11 -15.06 -0.14 -5.19 16 8 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 9 N -0.59 -13.01 2.04 -167.58 -0.34 -13.35 16 10 C 0.16 3.31 4.73 -1.56 -0.01 3.31 16 11 C -0.10 -1.67 3.26 -88.63 -0.29 -1.96 16 12 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 13 C -0.11 -1.78 3.20 -88.46 -0.28 -2.06 16 14 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 15 C 0.13 2.68 6.35 -2.38 -0.02 2.67 16 16 C 0.16 2.44 2.80 -66.98 -0.19 2.25 16 17 H 0.09 1.61 7.20 -51.93 -0.37 1.24 16 18 C -0.13 -1.60 5.85 -26.60 -0.16 -1.76 16 19 C -0.11 -1.34 5.64 -26.74 -0.15 -1.49 16 20 C -0.08 -1.20 2.66 -90.29 -0.24 -1.45 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 22 C 0.12 1.82 4.57 -3.10 -0.01 1.81 16 23 N -0.58 -9.66 1.95 -163.59 -0.32 -9.98 16 24 C 0.54 9.75 7.74 -10.99 -0.09 9.67 16 25 O -0.55 -11.86 15.62 5.56 0.09 -11.77 16 26 C -0.07 -1.15 5.20 -29.04 -0.15 -1.30 16 27 C 0.01 0.24 5.73 -81.60 -0.47 -0.23 16 28 C -0.02 -0.37 11.79 -17.82 -0.21 -0.58 16 29 N -0.50 -8.58 11.25 -14.67 -0.16 -8.74 16 30 C 0.18 2.58 13.04 -90.37 -1.18 1.41 16 31 N -0.56 -8.72 6.15 -10.30 -0.06 -8.79 16 32 H 0.42 6.12 8.96 -40.82 -0.37 5.75 16 33 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 1.99 5.68 -51.93 -0.29 1.70 16 36 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.11 2.02 5.33 -51.93 -0.28 1.74 16 44 H 0.11 1.99 7.93 -51.93 -0.41 1.57 16 45 H 0.11 1.42 8.12 -51.93 -0.42 1.00 16 46 H 0.16 2.41 8.06 -52.48 -0.42 1.99 16 47 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -30.08 360.56 -10.63 -40.70 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.17 Total: 10.36 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.67 Total: 4.84 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.28 Total: -64.11 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.08 -10.63 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089870258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.268 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds