Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00421 * 2 1 4 4 C 1.52998 * 109.47603 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47488 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47092 * 179.97438 * 5 4 3 7 7 C 1.42906 * 113.99774 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47005 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47064 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00242 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00102 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00247 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.45953 * 324.97282 * 12 11 9 14 14 C 1.53039 * 109.45820 * 84.92840 * 12 11 9 15 15 C 1.53202 * 109.31021 * 181.38567 * 14 12 11 16 16 N 1.46928 * 108.77733 * 305.36599 * 15 14 12 17 17 C 1.36936 * 120.63121 * 233.63146 * 16 15 14 18 18 H 1.07993 * 119.99807 * 152.60582 * 17 16 15 19 19 C 1.38811 * 119.99684 * 332.60127 * 17 16 15 20 20 N 1.31626 * 119.99601 * 159.36194 * 19 17 16 21 21 Si 1.86797 * 120.00244 * 339.36385 * 19 17 16 22 22 H 1.48501 * 109.47358 * 92.90221 * 21 19 17 23 23 H 1.48505 * 109.46842 * 212.89930 * 21 19 17 24 24 H 1.48500 * 109.47018 * 332.89894 * 21 19 17 25 25 C 1.46928 * 118.73590 * 53.60921 * 16 15 14 26 26 C 1.53037 * 109.46019 * 204.99853 * 12 11 9 27 27 H 1.08997 * 109.50182 * 58.66440 * 26 12 11 28 28 O 1.42906 * 109.49920 * 298.56452 * 26 12 11 29 29 H 1.09005 * 109.47061 * 59.99411 * 1 2 3 30 30 H 1.08997 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46917 * 299.99713 * 1 2 3 32 32 H 1.09001 * 109.47498 * 300.00653 * 3 2 1 33 33 H 1.08999 * 109.47179 * 60.00181 * 3 2 1 34 34 H 1.09003 * 109.46907 * 300.00105 * 4 3 2 35 35 H 1.09001 * 109.47466 * 59.99552 * 4 3 2 36 36 H 1.09003 * 109.46833 * 299.99783 * 5 4 3 37 37 H 1.09004 * 109.47076 * 59.99840 * 5 4 3 38 38 H 1.09002 * 109.46607 * 299.99776 * 7 6 5 39 39 H 1.08997 * 109.47550 * 59.99862 * 7 6 5 40 40 H 1.09002 * 109.47035 * 299.99244 * 8 7 6 41 41 H 1.08997 * 109.47299 * 59.99439 * 8 7 6 42 42 H 0.97001 * 119.99860 * 359.97438 * 11 9 8 43 43 H 1.08996 * 109.50289 * 301.33519 * 14 12 11 44 44 H 1.09006 * 109.49962 * 61.43975 * 14 12 11 45 45 H 1.09000 * 109.58626 * 185.57572 * 15 14 12 46 46 H 1.08994 * 109.70031 * 65.22554 * 15 14 12 47 47 H 0.96996 * 119.99835 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.58513 * 186.60925 * 25 16 15 49 49 H 1.08998 * 109.59024 * 66.17799 * 25 16 15 50 50 H 0.96695 * 113.99593 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2649 3.7249 0.0012 8 6 7.7758 3.4840 0.0004 9 6 8.4956 4.8080 0.0010 10 8 7.8624 5.8424 0.0015 11 7 9.8429 4.8425 0.0010 12 6 10.5426 6.1296 0.0010 13 1 9.9767 6.8506 -0.5888 14 6 10.6740 6.6384 1.4384 15 6 11.3753 8.0005 1.4315 16 7 12.6532 7.8710 0.7180 17 6 13.8242 8.2677 1.3065 18 1 14.7562 7.8019 1.0223 19 6 13.8133 9.2685 2.2683 20 7 14.8158 9.3793 3.1141 21 14 12.3761 10.4580 2.3624 22 1 11.3723 9.9460 3.3296 23 1 12.8625 11.7875 2.8109 24 1 11.7511 10.5861 1.0214 25 6 12.6506 7.3072 -0.6388 26 6 11.9351 5.9529 -0.6087 27 1 11.8415 5.5684 -1.6243 28 8 12.6892 5.0325 0.1828 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 3.8574 0.6435 0.8891 35 1 3.8568 0.6438 -0.8908 36 1 3.8359 3.1237 -0.8896 37 1 3.8365 3.1227 0.8905 38 1 5.9870 4.2902 -0.8884 39 1 5.9870 4.2888 0.8916 40 1 8.0540 2.9185 0.8898 41 1 8.0534 2.9203 -0.8902 42 1 10.3492 4.0152 0.0010 43 1 9.6829 6.7419 1.8798 44 1 11.2611 5.9300 2.0229 45 1 11.5601 8.3216 2.4566 46 1 10.7475 8.7345 0.9264 47 1 14.8080 10.0784 3.7865 48 1 13.6769 7.1707 -0.9797 49 1 12.1258 7.9828 -1.3143 50 1 13.5844 4.8728 -0.1458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100072698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -159.314366 kcal Electronic energy + Delta-G solvation = -28328.824961 eV Core-core repulsion = 24164.035881 eV Total energy + Delta-G solvation = -4164.789081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.04645 -38.78312 -38.34138 -37.83627 -35.16803 -34.44563 -33.56162 -32.12624 -31.41686 -30.08223 -29.30004 -27.50675 -25.60549 -24.98666 -23.54551 -22.80946 -22.10867 -21.75144 -20.22166 -19.66378 -17.67908 -17.16871 -17.04828 -16.83112 -16.48218 -16.29207 -16.06263 -15.94672 -15.24295 -15.19523 -14.93334 -14.40242 -14.35128 -14.21077 -14.06918 -13.66874 -13.42794 -13.03560 -12.83397 -12.37689 -12.35854 -12.15193 -12.01862 -11.96632 -11.86877 -11.68068 -11.47684 -11.30744 -11.30180 -11.11338 -10.85853 -10.27046 -10.18082 -10.18074 -10.07514 -9.90762 -9.76684 -9.61123 -9.49263 -8.82582 -8.58301 -6.98376 -5.95452 -3.31218 2.64418 2.74683 3.25576 3.34532 3.49667 3.52508 3.84009 4.44791 4.52274 4.53995 4.60152 4.61759 4.73417 4.79715 4.83476 4.86452 4.89218 4.95698 4.96122 5.05352 5.10840 5.15830 5.20803 5.24274 5.33377 5.39868 5.51098 5.55476 5.58337 5.65975 5.72028 5.72524 5.94990 6.09553 6.23593 6.26808 6.39062 6.46433 6.62901 6.64380 6.70876 6.86202 6.96118 7.59398 7.89992 8.03367 8.26560 8.30594 8.90838 9.70509 10.06742 11.20292 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.001775 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.754864 B =15768.741516 C =16392.356420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.119 4.119 5 C 0.068 3.932 6 O -0.390 6.390 7 C 0.079 3.921 8 C -0.139 4.139 9 C 0.514 3.486 10 O -0.547 6.547 11 N -0.717 5.717 12 C 0.161 3.839 13 H 0.092 0.908 14 C -0.137 4.137 15 C 0.128 3.872 16 N -0.596 5.596 17 C -0.258 4.258 18 H 0.085 0.915 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.121 3.879 26 C 0.081 3.919 27 H 0.050 0.950 28 O -0.553 6.553 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.404 0.596 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.026 0.974 47 H 0.262 0.738 48 H 0.071 0.929 49 H 0.032 0.968 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.038 -17.075 -9.257 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.157 4.157 5 C -0.009 4.009 6 O -0.310 6.310 7 C 0.002 3.998 8 C -0.180 4.180 9 C 0.300 3.700 10 O -0.425 6.425 11 N -0.367 5.367 12 C 0.057 3.943 13 H 0.110 0.890 14 C -0.178 4.178 15 C 0.002 3.998 16 N -0.319 5.319 17 C -0.386 4.386 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.196 1.196 25 C -0.006 4.006 26 C 0.020 3.980 27 H 0.068 0.932 28 O -0.359 6.359 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.239 0.761 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.050 0.950 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.724 -16.564 -8.778 29.459 hybrid contribution -0.344 0.870 -0.132 0.945 sum -23.068 -15.694 -8.909 29.289 Atomic orbital electron populations 1.22761 0.80705 1.02944 1.00099 1.87867 1.19940 1.27788 1.95454 1.22372 0.93500 0.84889 1.00522 1.21368 0.92623 0.96859 1.04809 1.22267 0.81189 0.96779 1.00637 1.87780 1.17795 1.29766 1.95611 1.22125 0.90803 0.84955 1.01870 1.21465 0.94566 0.96239 1.05682 1.20364 0.82697 0.90813 0.76116 1.90716 1.66491 1.35271 1.50009 1.46131 1.05869 1.10338 1.74374 1.20985 0.90287 0.84638 0.98411 0.89050 1.22313 1.00130 0.99831 0.95490 1.21341 0.87066 0.93712 0.97645 1.44192 1.03586 1.72862 1.11270 1.18853 0.86079 1.14704 1.18950 0.89779 1.25249 0.96617 0.98030 0.97569 1.69838 1.32764 1.34317 1.18091 0.86974 0.82526 0.81157 0.78135 1.21597 1.23130 1.19573 1.21580 0.99254 0.91868 0.87935 1.22577 0.91106 0.91990 0.92320 0.93194 1.86445 1.29553 1.64057 1.55811 0.93971 0.89457 0.93944 0.93024 0.92987 0.90111 0.90145 0.93030 0.92986 0.92341 0.92253 0.87981 0.88128 0.76118 0.92579 0.90507 0.90645 0.95601 0.92774 0.91044 0.95028 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.24 10.70 -35.23 -0.38 -3.62 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.88 5.95 -26.73 -0.16 -1.04 16 5 C 0.07 0.54 5.94 37.16 0.22 0.76 16 6 O -0.39 -3.98 10.34 -35.23 -0.36 -4.35 16 7 C 0.08 0.83 5.23 37.16 0.19 1.02 16 8 C -0.14 -1.37 6.07 -27.89 -0.17 -1.54 16 9 C 0.51 6.92 7.79 -10.99 -0.09 6.83 16 10 O -0.55 -9.41 15.65 5.55 0.09 -9.33 16 11 N -0.72 -9.47 5.05 -53.77 -0.27 -9.74 16 12 C 0.16 2.60 2.20 -67.89 -0.15 2.45 16 13 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 14 C -0.14 -2.63 5.51 -26.61 -0.15 -2.78 16 15 C 0.13 2.88 4.21 -3.70 -0.02 2.87 16 16 N -0.60 -13.83 2.71 -172.31 -0.47 -14.29 16 17 C -0.26 -7.07 10.04 -15.06 -0.15 -7.22 16 18 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 19 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 20 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 21 Si 0.88 22.64 24.34 -169.99 -4.14 18.50 16 22 H -0.29 -7.25 6.62 56.52 0.37 -6.87 16 23 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 24 H -0.27 -6.83 6.64 56.52 0.38 -6.46 16 25 C 0.12 2.21 6.16 -3.71 -0.02 2.19 16 26 C 0.08 1.23 3.38 -26.61 -0.09 1.14 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 O -0.55 -8.45 12.09 -35.23 -0.43 -8.87 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.06 0.66 8.10 -51.93 -0.42 0.23 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.40 4.51 8.26 -40.82 -0.34 4.17 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.57 7.61 -51.93 -0.40 1.17 16 45 H 0.08 1.87 4.50 -51.93 -0.23 1.64 16 46 H 0.03 0.58 7.07 -51.93 -0.37 0.22 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.38 4.57 9.08 45.56 0.41 4.99 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -34.41 398.44 -6.61 -41.02 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.10 Total: 4.46 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 0.67 Total: 7.19 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.04 Total: -51.02 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -1.08 Total: -26.16 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.41 -6.61 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100072698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.299 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds