Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00421 * 2 1 4 4 C 1.52998 * 109.47603 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47488 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47092 * 179.97438 * 5 4 3 7 7 C 1.42906 * 113.99774 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47005 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47064 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00242 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00102 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00247 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.45953 * 324.97282 * 12 11 9 14 14 C 1.53039 * 109.45820 * 84.92840 * 12 11 9 15 15 C 1.53202 * 109.31021 * 181.38567 * 14 12 11 16 16 N 1.46928 * 108.77733 * 305.36599 * 15 14 12 17 17 C 1.36936 * 120.63121 * 233.63146 * 16 15 14 18 18 H 1.07993 * 119.99807 * 152.60582 * 17 16 15 19 19 C 1.38811 * 119.99684 * 332.60127 * 17 16 15 20 20 N 1.31626 * 119.99601 * 159.36194 * 19 17 16 21 21 Si 1.86797 * 120.00244 * 339.36385 * 19 17 16 22 22 H 1.48501 * 109.47358 * 92.90221 * 21 19 17 23 23 H 1.48505 * 109.46842 * 212.89930 * 21 19 17 24 24 H 1.48500 * 109.47018 * 332.89894 * 21 19 17 25 25 C 1.46928 * 118.73590 * 53.60921 * 16 15 14 26 26 C 1.53037 * 109.46019 * 204.99853 * 12 11 9 27 27 H 1.08997 * 109.50182 * 58.66440 * 26 12 11 28 28 O 1.42906 * 109.49920 * 298.56452 * 26 12 11 29 29 H 1.09005 * 109.47061 * 59.99411 * 1 2 3 30 30 H 1.08997 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46917 * 299.99713 * 1 2 3 32 32 H 1.09001 * 109.47498 * 300.00653 * 3 2 1 33 33 H 1.08999 * 109.47179 * 60.00181 * 3 2 1 34 34 H 1.09003 * 109.46907 * 300.00105 * 4 3 2 35 35 H 1.09001 * 109.47466 * 59.99552 * 4 3 2 36 36 H 1.09003 * 109.46833 * 299.99783 * 5 4 3 37 37 H 1.09004 * 109.47076 * 59.99840 * 5 4 3 38 38 H 1.09002 * 109.46607 * 299.99776 * 7 6 5 39 39 H 1.08997 * 109.47550 * 59.99862 * 7 6 5 40 40 H 1.09002 * 109.47035 * 299.99244 * 8 7 6 41 41 H 1.08997 * 109.47299 * 59.99439 * 8 7 6 42 42 H 0.97001 * 119.99860 * 359.97438 * 11 9 8 43 43 H 1.08996 * 109.50289 * 301.33519 * 14 12 11 44 44 H 1.09006 * 109.49962 * 61.43975 * 14 12 11 45 45 H 1.09000 * 109.58626 * 185.57572 * 15 14 12 46 46 H 1.08994 * 109.70031 * 65.22554 * 15 14 12 47 47 H 0.96996 * 119.99835 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.58513 * 186.60925 * 25 16 15 49 49 H 1.08998 * 109.59024 * 66.17799 * 25 16 15 50 50 H 0.96695 * 113.99593 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2649 3.7249 0.0012 8 6 7.7758 3.4840 0.0004 9 6 8.4956 4.8080 0.0010 10 8 7.8624 5.8424 0.0015 11 7 9.8429 4.8425 0.0010 12 6 10.5426 6.1296 0.0010 13 1 9.9767 6.8506 -0.5888 14 6 10.6740 6.6384 1.4384 15 6 11.3753 8.0005 1.4315 16 7 12.6532 7.8710 0.7180 17 6 13.8242 8.2677 1.3065 18 1 14.7562 7.8019 1.0223 19 6 13.8133 9.2685 2.2683 20 7 14.8158 9.3793 3.1141 21 14 12.3761 10.4580 2.3624 22 1 11.3723 9.9460 3.3296 23 1 12.8625 11.7875 2.8109 24 1 11.7511 10.5861 1.0214 25 6 12.6506 7.3072 -0.6388 26 6 11.9351 5.9529 -0.6087 27 1 11.8415 5.5684 -1.6243 28 8 12.6892 5.0325 0.1828 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 3.8574 0.6435 0.8891 35 1 3.8568 0.6438 -0.8908 36 1 3.8359 3.1237 -0.8896 37 1 3.8365 3.1227 0.8905 38 1 5.9870 4.2902 -0.8884 39 1 5.9870 4.2888 0.8916 40 1 8.0540 2.9185 0.8898 41 1 8.0534 2.9203 -0.8902 42 1 10.3492 4.0152 0.0010 43 1 9.6829 6.7419 1.8798 44 1 11.2611 5.9300 2.0229 45 1 11.5601 8.3216 2.4566 46 1 10.7475 8.7345 0.9264 47 1 14.8080 10.0784 3.7865 48 1 13.6769 7.1707 -0.9797 49 1 12.1258 7.9828 -1.3143 50 1 13.5844 4.8728 -0.1458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100072698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -188.014188 kcal Electronic energy + Delta-G solvation = -28330.069479 eV Core-core repulsion = 24164.035881 eV Total energy + Delta-G solvation = -4166.033598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.21335 -39.76706 -39.23308 -38.57481 -36.73073 -35.70180 -34.24423 -33.92124 -32.53720 -31.52901 -30.73598 -27.99112 -27.03748 -25.77881 -24.64634 -24.36481 -23.38613 -22.59670 -21.40027 -20.97515 -19.05707 -18.45712 -17.77038 -17.67228 -17.58064 -17.48142 -16.93963 -16.81979 -16.67631 -16.08925 -15.89511 -15.73195 -15.69830 -15.25087 -15.18465 -14.93232 -14.69035 -14.49204 -13.95252 -13.88863 -13.65160 -13.49870 -13.12832 -12.87222 -12.77714 -12.63618 -12.58181 -12.44603 -12.27045 -12.15683 -11.93397 -11.92487 -11.88820 -11.73904 -11.42794 -11.08880 -10.95895 -10.65763 -10.63047 -10.57814 -10.03685 -8.91338 -8.16517 -5.46603 1.28806 1.38664 1.46716 1.60052 1.91548 2.40796 2.51415 3.01436 3.16440 3.28645 3.44779 3.72525 3.79899 3.90898 3.93970 4.06012 4.08769 4.10847 4.19433 4.24265 4.30222 4.38930 4.42864 4.44227 4.50301 4.53567 4.54702 4.59860 4.63772 4.75702 4.79692 4.82148 4.83768 4.85574 4.89757 4.96118 5.00286 5.07994 5.12129 5.35676 5.48379 5.85921 6.12037 6.12883 6.21562 6.57190 6.86201 7.00699 7.24098 7.61305 8.02104 9.03030 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.001775 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.754864 B =15768.741516 C =16392.356420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.114 4.114 5 C 0.064 3.936 6 O -0.400 6.400 7 C 0.081 3.919 8 C -0.129 4.129 9 C 0.514 3.486 10 O -0.586 6.586 11 N -0.706 5.706 12 C 0.164 3.836 13 H 0.085 0.915 14 C -0.125 4.125 15 C 0.125 3.875 16 N -0.608 5.608 17 C -0.237 4.237 18 H 0.062 0.938 19 C -0.033 4.033 20 N -0.955 5.955 21 Si 0.937 3.063 22 H -0.285 1.285 23 H -0.310 1.310 24 H -0.262 1.262 25 C 0.111 3.889 26 C 0.096 3.904 27 H 0.093 0.907 28 O -0.566 6.566 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.418 0.582 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.029 0.971 47 H 0.260 0.740 48 H 0.078 0.922 49 H 0.045 0.955 50 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.872 -18.657 -11.028 32.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.151 4.151 5 C -0.012 4.012 6 O -0.320 6.320 7 C 0.004 3.996 8 C -0.169 4.169 9 C 0.302 3.698 10 O -0.467 6.467 11 N -0.357 5.357 12 C 0.059 3.941 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.001 4.001 16 N -0.332 5.332 17 C -0.367 4.367 18 H 0.080 0.920 19 C -0.228 4.228 20 N -0.601 5.601 21 Si 0.767 3.233 22 H -0.212 1.212 23 H -0.239 1.239 24 H -0.187 1.187 25 C -0.014 4.014 26 C 0.035 3.965 27 H 0.110 0.890 28 O -0.374 6.374 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.063 0.937 50 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.581 -18.204 -10.595 32.371 hybrid contribution 0.206 1.262 0.365 1.330 sum -24.375 -16.942 -10.229 31.397 Atomic orbital electron populations 1.22934 0.79268 1.03884 1.00988 1.87821 1.21648 1.28743 1.95658 1.22415 0.92753 0.84612 1.01542 1.21306 0.93392 0.96406 1.04017 1.22406 0.80130 0.97212 1.01492 1.87756 1.19001 1.29581 1.95670 1.22049 0.91310 0.84985 1.01221 1.21418 0.93647 0.94231 1.07573 1.20946 0.82488 0.91570 0.74759 1.90707 1.67221 1.37027 1.51726 1.45937 1.05945 1.09766 1.74055 1.20754 0.91406 0.85886 0.96024 0.89698 1.22110 0.99143 0.97571 0.97739 1.21292 0.87097 0.95695 0.95988 1.44292 1.02401 1.73160 1.13387 1.18874 0.86911 1.13176 1.17709 0.92043 1.25806 0.98904 0.99968 0.98133 1.69952 1.35155 1.35441 1.19569 0.86064 0.80043 0.78799 0.78404 1.21218 1.23899 1.18666 1.21902 1.00605 0.93638 0.85297 1.22412 0.89758 0.90113 0.94212 0.88977 1.86414 1.30733 1.63695 1.56509 0.92999 0.88618 0.93108 0.91864 0.92066 0.91035 0.90776 0.91966 0.92330 0.92704 0.93347 0.86475 0.85643 0.74537 0.92690 0.91904 0.93477 0.95358 0.93125 0.90370 0.93748 0.76008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.48 10.70 -148.98 -1.59 -8.08 16 3 C 0.06 0.74 5.94 71.98 0.43 1.17 16 4 C -0.11 -1.56 5.95 30.59 0.18 -1.37 16 5 C 0.06 0.91 5.94 71.98 0.43 1.34 16 6 O -0.40 -7.42 10.34 -148.98 -1.54 -8.96 16 7 C 0.08 1.54 5.23 71.98 0.38 1.92 16 8 C -0.13 -2.16 6.07 29.85 0.18 -1.98 16 9 C 0.51 12.56 7.79 87.66 0.68 13.24 16 10 O -0.59 -19.26 15.65 -3.04 -0.05 -19.31 16 11 N -0.71 -16.50 5.05 -442.42 -2.23 -18.74 16 12 C 0.16 4.90 2.20 45.02 0.10 4.99 16 13 H 0.09 2.71 7.58 -2.39 -0.02 2.69 16 14 C -0.13 -4.65 5.51 30.68 0.17 -4.48 16 15 C 0.13 5.53 4.21 86.37 0.36 5.89 16 16 N -0.61 -27.66 2.71 -699.07 -1.89 -29.56 16 17 C -0.24 -13.09 10.04 84.03 0.84 -12.25 16 18 H 0.06 3.62 8.05 -2.91 -0.02 3.60 16 19 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 20 N -0.95 -60.04 13.97 21.65 0.30 -59.74 16 21 Si 0.94 47.61 24.34 68.60 1.67 49.28 16 22 H -0.28 -14.12 6.62 99.48 0.66 -13.47 16 23 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 24 H -0.26 -12.76 6.64 99.48 0.66 -12.10 16 25 C 0.11 3.80 6.16 86.36 0.53 4.33 16 26 C 0.10 2.57 3.38 30.67 0.10 2.67 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 O -0.57 -15.61 12.09 -148.98 -1.80 -17.41 16 29 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 39 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.42 7.73 8.26 -92.71 -0.77 6.96 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 2.50 7.61 -2.38 -0.02 2.48 16 45 H 0.05 2.34 4.50 -2.39 -0.01 2.33 16 46 H 0.03 1.24 7.07 -2.39 -0.02 1.23 16 47 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.08 2.55 7.93 -2.39 -0.02 2.53 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.39 8.35 9.08 -74.06 -0.67 7.68 16 Total: -1.00 -75.40 398.44 -1.66 -77.06 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.60 Total: 20.04 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.08 Total: 15.43 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.83 Total: -108.04 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -4.98 Total: -53.76 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.67 Total: 49.28 kcal Total: -75.40 -1.66 -77.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100072698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.958 kcal (2) G-P(sol) polarization free energy of solvation -75.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds