Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.46798 * 2 1 4 4 C 1.42901 * 113.99611 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47026 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47274 * 65.00420 * 5 4 3 7 7 C 1.42904 * 114.00181 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47185 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99844 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47275 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.51201 * 305.10207 * 12 11 10 14 14 C 1.53293 * 109.51322 * 184.99935 * 12 11 10 15 15 N 1.47158 * 108.38319 * 187.77405 * 14 12 11 16 16 C 1.36938 * 120.98083 * 230.51338 * 15 14 12 17 17 H 1.07999 * 119.99625 * 153.74920 * 16 15 14 18 18 C 1.38811 * 120.00209 * 333.74472 * 16 15 14 19 19 N 1.31612 * 119.99959 * 160.04089 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 340.03947 * 18 16 15 21 21 H 1.48503 * 109.47313 * 91.88812 * 20 18 16 22 22 H 1.48500 * 109.47192 * 211.88586 * 20 18 16 23 23 H 1.48500 * 109.47321 * 331.88838 * 20 18 16 24 24 C 1.47155 * 118.03579 * 50.53641 * 15 14 12 25 25 C 1.53297 * 108.38452 * 309.46525 * 24 15 14 26 26 O 1.42964 * 109.50949 * 65.25215 * 12 11 10 27 27 H 1.09004 * 109.47393 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47342 * 299.99638 * 1 2 3 29 29 H 1.09006 * 109.47434 * 59.99832 * 1 2 3 30 30 H 1.09000 * 109.47342 * 240.00362 * 2 1 3 31 31 H 1.08998 * 109.46839 * 119.99998 * 2 1 3 32 32 H 1.09002 * 109.47274 * 60.00528 * 4 3 2 33 33 H 1.08999 * 109.47818 * 300.00109 * 4 3 2 34 34 H 1.08997 * 109.47264 * 185.00053 * 5 4 3 35 35 H 1.09001 * 109.46842 * 305.00220 * 5 4 3 36 36 H 1.08996 * 109.47043 * 299.99786 * 7 6 5 37 37 H 1.09005 * 109.46856 * 59.99593 * 7 6 5 38 38 H 0.96999 * 119.99909 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47140 * 299.99862 * 11 10 8 40 40 H 1.09000 * 109.46968 * 59.99899 * 11 10 8 41 41 H 1.08995 * 109.46649 * 60.00084 * 13 12 11 42 42 H 1.09000 * 109.46960 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46937 * 299.99762 * 13 12 11 44 44 H 1.08995 * 109.68164 * 307.49333 * 14 12 11 45 45 H 1.08997 * 109.68289 * 68.01551 * 14 12 11 46 46 H 0.97006 * 120.00112 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.68393 * 69.18575 * 24 15 14 48 48 H 1.09000 * 109.68266 * 189.74127 * 24 15 14 49 49 H 1.08999 * 109.51204 * 172.22743 * 25 24 15 50 50 H 1.09003 * 109.51045 * 292.32683 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 8 3.3976 3.5451 1.2223 7 6 3.7183 4.9339 1.3248 8 6 3.2231 5.4677 2.6442 9 8 2.6521 4.7312 3.4204 10 7 3.4146 6.7635 2.9615 11 6 2.9336 7.2823 4.2444 12 6 3.2768 8.7692 4.3541 13 6 4.7793 8.9640 4.1403 14 6 2.8865 9.2835 5.7445 15 7 3.0507 10.7458 5.7614 16 6 3.7582 11.3643 6.7574 17 1 4.2324 12.3166 6.5716 18 6 3.8659 10.7672 8.0059 19 7 4.8312 11.1255 8.8257 20 14 2.6407 9.4552 8.5225 21 1 3.1661 8.1154 8.1560 22 1 2.4347 9.5212 9.9917 23 1 1.3472 9.6858 7.8305 24 6 2.4317 11.5239 4.6765 25 6 2.8441 10.9004 3.3382 26 8 2.5534 9.5008 3.3615 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9767 0.8908 34 1 4.9081 3.0255 -0.0880 35 1 3.3497 3.4417 -0.8407 36 1 4.7988 5.0628 1.2629 37 1 3.2402 5.4783 0.5104 38 1 3.8715 7.3524 2.3408 39 1 1.8531 7.1529 4.3065 40 1 3.4121 6.7382 5.0587 41 1 5.0556 8.5998 3.1509 42 1 5.0230 10.0236 4.2182 43 1 5.3294 8.4076 4.8992 44 1 1.8473 9.0284 5.9519 45 1 3.5326 8.8323 6.4975 46 1 4.9062 10.7085 9.6983 47 1 1.3467 11.4943 4.7764 48 1 2.7770 12.5567 4.7222 49 1 2.2882 11.3743 2.5291 50 1 3.9125 11.0485 3.1814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108422322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -138.643349 kcal Electronic energy + Delta-G solvation = -29158.602404 eV Core-core repulsion = 24994.709686 eV Total energy + Delta-G solvation = -4163.892718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.01606 -39.17309 -38.51787 -37.29250 -35.08772 -34.53703 -32.27604 -31.97224 -31.60266 -29.92756 -28.50395 -27.97943 -26.42368 -25.14408 -23.62646 -23.08793 -22.88809 -21.24662 -20.51832 -19.14919 -17.52450 -17.49156 -17.23696 -16.98637 -16.25349 -16.18061 -15.98181 -15.44710 -15.24641 -15.00816 -14.64193 -14.54548 -14.14951 -13.94481 -13.84423 -13.64971 -13.37035 -13.08417 -12.72220 -12.62315 -12.42253 -12.36108 -12.12936 -11.86570 -11.78632 -11.58860 -11.55674 -11.41527 -11.27418 -11.09088 -10.87206 -10.39923 -10.21238 -9.99295 -9.91617 -9.84888 -9.68413 -9.53585 -9.40950 -8.96892 -8.60008 -7.05266 -6.02374 -3.39660 2.66123 2.73109 3.27986 3.33592 3.46242 3.48284 3.78974 4.02789 4.45965 4.58338 4.71127 4.72633 4.75374 4.79752 4.88375 4.92283 4.98455 5.03641 5.05871 5.08939 5.16253 5.22290 5.29416 5.32837 5.38619 5.44352 5.61427 5.72365 5.74120 5.81617 5.83974 5.91138 5.96912 6.04864 6.21198 6.24427 6.43505 6.44318 6.50403 6.58916 6.73348 6.75084 6.92170 7.54893 7.60834 7.81062 8.23143 8.27818 8.80940 9.62033 9.98190 11.13038 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.002264 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.936258 B =12364.047300 C =12870.721750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.045 3.955 8 C 0.510 3.490 9 O -0.522 6.522 10 N -0.717 5.717 11 C 0.137 3.863 12 C 0.089 3.911 13 C -0.164 4.164 14 C 0.108 3.892 15 N -0.603 5.603 16 C -0.261 4.261 17 H 0.088 0.912 18 C 0.026 3.974 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.044 3.956 26 O -0.380 6.380 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.403 0.597 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.264 0.736 47 H 0.031 0.969 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -15.740 -21.607 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.035 4.035 8 C 0.295 3.705 9 O -0.397 6.397 10 N -0.372 5.372 11 C 0.013 3.987 12 C 0.048 3.952 13 C -0.222 4.222 14 C -0.019 4.019 15 N -0.328 5.328 16 C -0.389 4.389 17 H 0.106 0.894 18 C -0.174 4.174 19 N -0.548 5.548 20 Si 0.708 3.292 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.013 4.013 25 C -0.034 4.034 26 O -0.299 6.299 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.555 -16.292 -20.823 26.485 hybrid contribution 0.106 -0.327 0.112 0.362 sum -1.449 -16.620 -20.710 26.594 Atomic orbital electron populations 1.21741 0.93673 1.02137 1.03387 1.22457 0.95827 0.83821 0.99844 1.87993 1.20342 1.26238 1.95358 1.22482 0.82453 0.95335 1.00886 1.22591 0.98384 0.92904 0.87636 1.88095 1.80748 1.20761 1.37603 1.22190 1.00452 0.84481 0.96381 1.20180 0.80092 0.82200 0.88046 1.90742 1.40830 1.57111 1.50990 1.45844 1.60477 1.09857 1.21006 1.21367 1.00543 0.91572 0.85176 1.22247 0.92034 0.89669 0.91297 1.22227 0.95055 1.04353 1.00545 1.21917 0.99492 0.86190 0.94262 1.44304 1.61456 0.99696 1.27328 1.18875 1.24709 1.06420 0.88899 0.89408 1.25244 0.97784 0.98457 0.95899 1.69812 1.30457 1.44685 1.09835 0.87060 0.83628 0.81479 0.77040 1.21339 1.22901 1.19436 1.21632 0.96191 0.95839 0.87687 1.23086 1.00218 0.81554 0.98564 1.87856 1.66500 1.19728 1.55808 0.91180 0.91536 0.91933 0.93655 0.93327 0.91778 0.92250 0.91549 0.92192 0.90354 0.90210 0.76193 0.90635 0.89957 0.93427 0.90225 0.91539 0.94575 0.89904 0.92625 0.95117 0.91018 0.89643 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.25 10.31 -40.07 -0.41 -4.67 16 4 C 0.07 0.55 6.32 37.16 0.23 0.79 16 5 C 0.06 0.52 6.32 37.16 0.23 0.76 16 6 O -0.35 -4.56 9.84 -59.73 -0.59 -5.14 16 7 C 0.05 0.47 6.42 36.00 0.23 0.70 16 8 C 0.51 7.46 7.91 -10.99 -0.09 7.38 16 9 O -0.52 -10.17 16.50 -14.36 -0.24 -10.41 16 10 N -0.72 -9.64 5.19 -60.30 -0.31 -9.95 16 11 C 0.14 2.23 4.85 -4.04 -0.02 2.21 16 12 C 0.09 1.54 0.78 -90.47 -0.07 1.47 16 13 C -0.16 -2.62 7.87 37.16 0.29 -2.33 16 14 C 0.11 2.32 3.05 -3.53 -0.01 2.31 16 15 N -0.60 -13.82 2.36 -171.83 -0.40 -14.22 16 16 C -0.26 -7.03 10.10 -15.06 -0.15 -7.18 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 19 N -0.91 -27.14 13.97 55.49 0.78 -26.37 16 20 Si 0.88 22.23 24.28 -169.99 -4.13 18.10 16 21 H -0.29 -6.96 6.58 56.52 0.37 -6.59 16 22 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 23 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 24 C 0.11 2.12 6.73 -3.53 -0.02 2.10 16 25 C 0.04 0.68 6.60 37.31 0.25 0.93 16 26 O -0.38 -6.38 10.18 -35.23 -0.36 -6.74 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 4.40 6.98 -40.82 -0.29 4.11 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 42 H 0.08 1.42 6.12 -51.93 -0.32 1.10 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.81 6.86 -51.93 -0.36 0.45 16 45 H 0.08 1.93 4.60 -51.93 -0.24 1.69 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 49 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.05 0.82 6.26 -51.93 -0.32 0.49 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -35.13 393.99 -6.98 -42.10 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.66 Total: 1.66 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 1.41 Total: 9.70 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.06 Total: -50.54 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.60 Total: -26.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.13 Total: 18.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.13 -6.98 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108422322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.540 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds