Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.46798 * 2 1 4 4 C 1.42901 * 113.99611 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47026 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47274 * 65.00420 * 5 4 3 7 7 C 1.42904 * 114.00181 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47185 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99844 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47275 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.51201 * 305.10207 * 12 11 10 14 14 C 1.53293 * 109.51322 * 184.99935 * 12 11 10 15 15 N 1.47158 * 108.38319 * 187.77405 * 14 12 11 16 16 C 1.36938 * 120.98083 * 230.51338 * 15 14 12 17 17 H 1.07999 * 119.99625 * 153.74920 * 16 15 14 18 18 C 1.38811 * 120.00209 * 333.74472 * 16 15 14 19 19 N 1.31612 * 119.99959 * 160.04089 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 340.03947 * 18 16 15 21 21 H 1.48503 * 109.47313 * 91.88812 * 20 18 16 22 22 H 1.48500 * 109.47192 * 211.88586 * 20 18 16 23 23 H 1.48500 * 109.47321 * 331.88838 * 20 18 16 24 24 C 1.47155 * 118.03579 * 50.53641 * 15 14 12 25 25 C 1.53297 * 108.38452 * 309.46525 * 24 15 14 26 26 O 1.42964 * 109.50949 * 65.25215 * 12 11 10 27 27 H 1.09004 * 109.47393 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47342 * 299.99638 * 1 2 3 29 29 H 1.09006 * 109.47434 * 59.99832 * 1 2 3 30 30 H 1.09000 * 109.47342 * 240.00362 * 2 1 3 31 31 H 1.08998 * 109.46839 * 119.99998 * 2 1 3 32 32 H 1.09002 * 109.47274 * 60.00528 * 4 3 2 33 33 H 1.08999 * 109.47818 * 300.00109 * 4 3 2 34 34 H 1.08997 * 109.47264 * 185.00053 * 5 4 3 35 35 H 1.09001 * 109.46842 * 305.00220 * 5 4 3 36 36 H 1.08996 * 109.47043 * 299.99786 * 7 6 5 37 37 H 1.09005 * 109.46856 * 59.99593 * 7 6 5 38 38 H 0.96999 * 119.99909 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47140 * 299.99862 * 11 10 8 40 40 H 1.09000 * 109.46968 * 59.99899 * 11 10 8 41 41 H 1.08995 * 109.46649 * 60.00084 * 13 12 11 42 42 H 1.09000 * 109.46960 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46937 * 299.99762 * 13 12 11 44 44 H 1.08995 * 109.68164 * 307.49333 * 14 12 11 45 45 H 1.08997 * 109.68289 * 68.01551 * 14 12 11 46 46 H 0.97006 * 120.00112 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.68393 * 69.18575 * 24 15 14 48 48 H 1.09000 * 109.68266 * 189.74127 * 24 15 14 49 49 H 1.08999 * 109.51204 * 172.22743 * 25 24 15 50 50 H 1.09003 * 109.51045 * 292.32683 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 8 3.3976 3.5451 1.2223 7 6 3.7183 4.9339 1.3248 8 6 3.2231 5.4677 2.6442 9 8 2.6521 4.7312 3.4204 10 7 3.4146 6.7635 2.9615 11 6 2.9336 7.2823 4.2444 12 6 3.2768 8.7692 4.3541 13 6 4.7793 8.9640 4.1403 14 6 2.8865 9.2835 5.7445 15 7 3.0507 10.7458 5.7614 16 6 3.7582 11.3643 6.7574 17 1 4.2324 12.3166 6.5716 18 6 3.8659 10.7672 8.0059 19 7 4.8312 11.1255 8.8257 20 14 2.6407 9.4552 8.5225 21 1 3.1661 8.1154 8.1560 22 1 2.4347 9.5212 9.9917 23 1 1.3472 9.6858 7.8305 24 6 2.4317 11.5239 4.6765 25 6 2.8441 10.9004 3.3382 26 8 2.5534 9.5008 3.3615 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9767 0.8908 34 1 4.9081 3.0255 -0.0880 35 1 3.3497 3.4417 -0.8407 36 1 4.7988 5.0628 1.2629 37 1 3.2402 5.4783 0.5104 38 1 3.8715 7.3524 2.3408 39 1 1.8531 7.1529 4.3065 40 1 3.4121 6.7382 5.0587 41 1 5.0556 8.5998 3.1509 42 1 5.0230 10.0236 4.2182 43 1 5.3294 8.4076 4.8992 44 1 1.8473 9.0284 5.9519 45 1 3.5326 8.8323 6.4975 46 1 4.9062 10.7085 9.6983 47 1 1.3467 11.4943 4.7764 48 1 2.7770 12.5567 4.7222 49 1 2.2882 11.3743 2.5291 50 1 3.9125 11.0485 3.1814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108422322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -165.625851 kcal Electronic energy + Delta-G solvation = -29159.772453 eV Core-core repulsion = 24994.709686 eV Total energy + Delta-G solvation = -4165.062767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.28996 -40.40712 -39.29403 -38.09942 -36.68011 -36.00653 -33.65128 -33.41431 -32.76859 -30.66276 -29.97377 -28.95985 -28.02992 -26.48683 -25.31243 -23.68913 -23.50113 -22.83098 -21.69058 -20.65874 -19.06996 -18.51213 -18.15639 -17.93758 -17.65609 -17.16155 -17.02188 -16.75043 -16.33591 -16.18010 -15.97140 -15.79060 -15.56598 -15.48342 -15.18376 -14.68158 -14.38219 -14.27092 -14.05134 -13.91843 -13.60697 -13.47947 -13.37688 -13.08306 -13.04137 -12.89908 -12.70636 -12.39812 -12.37052 -12.23234 -12.19842 -12.01570 -11.89141 -11.63863 -11.27828 -11.05319 -10.91551 -10.69140 -10.54695 -10.49592 -10.17832 -8.95765 -8.21275 -5.52962 1.23525 1.36611 1.42636 1.56680 1.77123 2.34704 2.65325 2.76700 2.92482 3.04593 3.21773 3.69581 3.79966 3.85401 3.90533 4.08013 4.14842 4.21849 4.25627 4.28224 4.33533 4.35352 4.41918 4.44390 4.47542 4.51406 4.51997 4.55062 4.59132 4.63055 4.72301 4.75227 4.81836 4.89259 4.89517 5.01789 5.05602 5.13208 5.24553 5.29827 5.36904 5.77705 6.06350 6.07675 6.24128 6.31551 6.54200 6.80669 7.21029 7.53319 7.94811 8.97877 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.002264 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.936258 B =12364.047300 C =12870.721750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.413 6.413 4 C 0.057 3.943 5 C 0.057 3.943 6 O -0.397 6.397 7 C 0.050 3.950 8 C 0.506 3.494 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.143 3.857 12 C 0.103 3.897 13 C -0.159 4.159 14 C 0.102 3.898 15 N -0.615 5.615 16 C -0.240 4.240 17 H 0.065 0.935 18 C -0.027 4.027 19 N -0.950 5.950 20 Si 0.929 3.071 21 H -0.276 1.276 22 H -0.310 1.310 23 H -0.268 1.268 24 C 0.103 3.897 25 C 0.050 3.950 26 O -0.377 6.377 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.027 0.973 45 H 0.061 0.939 46 H 0.262 0.738 47 H 0.032 0.968 48 H 0.075 0.925 49 H 0.125 0.875 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 -16.633 -25.252 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.019 4.019 5 C -0.019 4.019 6 O -0.316 6.316 7 C -0.029 4.029 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.357 5.357 11 C 0.018 3.982 12 C 0.061 3.939 13 C -0.216 4.216 14 C -0.025 4.025 15 N -0.341 5.341 16 C -0.369 4.369 17 H 0.082 0.918 18 C -0.222 4.222 19 N -0.596 5.596 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.239 1.239 23 H -0.193 1.193 24 C -0.021 4.021 25 C -0.027 4.027 26 O -0.296 6.296 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.257 0.743 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.094 0.906 49 H 0.143 0.857 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.264 -17.173 -24.548 29.985 hybrid contribution -0.001 0.015 1.154 1.154 sum -1.266 -17.158 -23.394 29.039 Atomic orbital electron populations 1.21774 0.93593 1.03251 1.02310 1.22625 0.96037 0.83065 1.00836 1.87949 1.22017 1.27830 1.95585 1.22723 0.81354 0.95927 1.01902 1.22868 1.00298 0.92477 0.86286 1.88046 1.81752 1.21920 1.39883 1.22293 1.02674 0.83898 0.94024 1.21060 0.78825 0.81729 0.89094 1.90720 1.43508 1.58501 1.53122 1.45652 1.59988 1.10020 1.20079 1.21088 0.99766 0.90822 0.86529 1.21943 0.92987 0.90077 0.88860 1.22171 0.93638 1.03211 1.02587 1.21915 0.98467 0.85394 0.96680 1.44411 1.61592 1.00685 1.27375 1.18841 1.23247 1.05215 0.89604 0.91763 1.25735 0.99219 1.00898 0.96374 1.69913 1.32349 1.46952 1.10359 0.86218 0.81787 0.80206 0.75890 1.20254 1.23868 1.19330 1.21894 0.96003 0.96079 0.88140 1.23162 1.01413 0.80688 0.97434 1.87877 1.66504 1.20305 1.54884 0.89016 0.93535 0.92006 0.91426 0.93459 0.88667 0.93189 0.88438 0.91232 0.86580 0.87358 0.74309 0.91969 0.90977 0.89422 0.91972 0.92544 0.95515 0.92042 0.92911 0.94997 0.90608 0.85710 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.78 6.66 71.98 0.48 1.26 16 3 O -0.41 -8.90 10.31 -144.35 -1.49 -10.39 16 4 C 0.06 0.86 6.32 71.98 0.45 1.32 16 5 C 0.06 0.80 6.32 71.98 0.45 1.25 16 6 O -0.40 -9.45 9.84 -125.56 -1.24 -10.69 16 7 C 0.05 0.89 6.42 71.23 0.46 1.34 16 8 C 0.51 13.89 7.91 87.66 0.69 14.58 16 9 O -0.58 -22.64 16.50 16.00 0.26 -22.37 16 10 N -0.70 -17.08 5.19 -463.08 -2.41 -19.48 16 11 C 0.14 4.48 4.85 86.38 0.42 4.90 16 12 C 0.10 3.37 0.78 -10.69 -0.01 3.37 16 13 C -0.16 -4.70 7.87 71.98 0.57 -4.13 16 14 C 0.10 4.31 3.05 86.35 0.26 4.58 16 15 N -0.62 -27.90 2.36 -697.54 -1.64 -29.54 16 16 C -0.24 -13.08 10.10 84.03 0.85 -12.23 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 18 C -0.03 -1.55 5.26 84.86 0.45 -1.10 16 19 N -0.95 -58.58 13.97 21.65 0.30 -58.28 16 20 Si 0.93 47.06 24.28 68.60 1.67 48.72 16 21 H -0.28 -13.33 6.58 99.48 0.65 -12.67 16 22 H -0.31 -16.00 7.11 99.48 0.71 -15.30 16 23 H -0.27 -13.35 6.54 99.48 0.65 -12.70 16 24 C 0.10 3.72 6.73 86.35 0.58 4.31 16 25 C 0.05 1.39 6.60 72.08 0.48 1.87 16 26 O -0.38 -11.46 10.18 -148.98 -1.52 -12.98 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.42 7.40 6.98 -92.71 -0.65 6.75 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 1.86 6.57 -2.39 -0.02 1.85 16 42 H 0.06 2.09 6.12 -2.39 -0.01 2.07 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 45 H 0.06 2.87 4.60 -2.39 -0.01 2.86 16 46 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.08 2.64 7.96 -2.39 -0.02 2.62 16 49 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 50 H 0.06 1.66 6.26 -2.39 -0.01 1.65 16 Total: -1.00 -79.97 393.99 0.98 -78.99 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.17 Total: 16.18 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 6.87 Total: 19.84 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.75 Total: -107.31 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -3.98 Total: -56.42 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.67 Total: 48.72 kcal Total: -79.97 0.98 -78.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108422322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.635 kcal (2) G-P(sol) polarization free energy of solvation -79.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds