Wall clock time and date at job start Tue Mar 31 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31814 * 119.12256 * 2 1 4 4 C 1.32314 * 120.81586 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.10826 * 359.97438 * 4 3 2 6 6 C 1.38578 * 118.39683 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.44841 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47322 * 124.99823 * 7 6 5 9 9 C 1.50697 * 109.47231 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00125 * 359.72130 * 9 8 7 11 11 N 1.34779 * 120.00233 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00340 * 179.72395 * 11 9 8 13 13 H 1.08997 * 110.55750 * 33.06903 * 12 11 9 14 14 C 1.54848 * 110.62596 * 155.97419 * 12 11 9 15 15 C 1.55852 * 103.44367 * 118.48886 * 14 12 11 16 16 H 1.08999 * 115.55667 * 159.56033 * 15 14 12 17 17 C 1.55839 * 105.06230 * 288.17349 * 15 14 12 18 18 C 1.54852 * 103.44819 * 71.82642 * 17 15 14 19 19 C 1.55839 * 103.44310 * 359.97438 * 18 17 15 20 20 H 1.09002 * 115.56088 * 159.56743 * 19 18 17 21 21 N 1.50238 * 101.05082 * 32.93606 * 15 14 12 22 22 C 1.36936 * 130.83784 * 126.03292 * 21 15 14 23 23 H 1.07999 * 119.99730 * 180.02562 * 22 21 15 24 24 C 1.38810 * 120.00047 * 0.02562 * 22 21 15 25 25 N 1.31619 * 120.00197 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99890 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47196 * 60.00048 * 26 24 22 28 28 H 1.48503 * 109.47130 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47184 * 299.99717 * 26 24 22 30 30 N 1.31783 * 119.12612 * 180.28586 * 2 1 3 31 31 H 1.09001 * 109.46962 * 90.00693 * 1 2 3 32 32 H 1.09005 * 109.47464 * 210.00287 * 1 2 3 33 33 H 1.08998 * 109.47795 * 330.00692 * 1 2 3 34 34 H 1.08003 * 120.44889 * 180.02562 * 4 3 2 35 35 H 1.07993 * 120.80474 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.46918 * 4.99903 * 7 6 5 37 37 H 1.08999 * 109.47154 * 244.99825 * 7 6 5 38 38 H 1.09001 * 109.47421 * 59.99515 * 8 7 6 39 39 H 1.08999 * 109.47008 * 300.00091 * 8 7 6 40 40 H 0.97007 * 119.99684 * 359.71727 * 11 9 8 41 41 H 1.08998 * 110.62258 * 236.97499 * 14 12 11 42 42 H 1.08999 * 110.63041 * 359.97438 * 14 12 11 43 43 H 1.09008 * 110.62325 * 190.31799 * 17 15 14 44 44 H 1.09005 * 110.62636 * 313.33326 * 17 15 14 45 45 H 1.09000 * 110.62548 * 118.48588 * 18 17 15 46 46 H 1.08995 * 110.62321 * 241.35189 * 18 17 15 47 47 H 0.96999 * 120.00103 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4710 1.1906 -0.0005 5 6 4.1808 -0.0001 -0.0005 6 6 3.4712 -1.1904 -0.0005 7 6 4.1961 -2.5116 0.0001 8 6 3.7156 -3.3564 1.1817 9 6 4.4409 -4.6774 1.1826 10 8 5.2577 -4.9213 0.3199 11 7 4.1775 -5.5902 2.1386 12 6 4.8782 -6.8767 2.1360 13 1 5.8918 -6.7598 1.7527 14 6 4.9000 -7.4888 3.5582 15 6 4.1216 -8.8283 3.3882 16 1 4.3040 -9.5790 4.1571 17 6 2.6327 -8.4099 3.1966 18 6 2.6108 -7.7978 1.7744 19 6 4.0896 -7.9291 1.3006 20 1 4.2438 -7.8847 0.2225 21 7 4.4983 -9.2039 1.9832 22 6 5.0457 -10.3538 1.4798 23 1 5.2487 -10.4373 0.4224 24 6 5.3396 -11.4120 2.3287 25 7 5.0916 -11.3104 3.6174 26 14 6.0869 -12.9803 1.6422 27 1 7.3866 -12.6675 0.9956 28 1 6.3044 -13.9495 2.7461 29 1 5.1644 -13.5705 0.6392 30 7 2.1483 -1.1512 -0.0057 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 3.9906 2.1374 -0.0001 35 1 5.2607 -0.0001 -0.0005 36 1 5.2684 -2.3377 0.0900 37 1 3.9904 -3.0393 -0.9312 38 1 2.6433 -3.5303 1.0919 39 1 3.9213 -2.8288 2.1130 40 1 3.5239 -5.3952 2.8285 41 1 5.9243 -7.6781 3.8791 42 1 4.3899 -6.8350 4.2656 43 1 1.9792 -9.2808 3.2500 44 1 2.3442 -7.6661 3.9393 45 1 1.9465 -8.3651 1.1224 46 1 2.3088 -6.7512 1.8115 47 1 5.2973 -12.0498 4.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109555639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:58 Heat of formation + Delta-G solvation = 50.647345 kcal Electronic energy + Delta-G solvation = -27814.609950 eV Core-core repulsion = 23998.527163 eV Total energy + Delta-G solvation = -3816.082787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.40846 -40.01606 -38.44117 -35.34381 -33.90198 -33.72093 -32.35715 -31.70079 -29.32950 -29.04130 -28.83586 -27.71927 -25.85567 -24.16013 -23.43228 -22.13543 -21.27711 -20.32149 -19.50055 -18.52833 -17.91365 -17.30424 -16.92311 -16.21251 -15.76728 -15.49769 -15.44028 -15.26184 -14.85345 -14.46986 -13.99432 -13.93218 -13.62557 -13.33851 -12.97329 -12.92754 -12.69282 -12.28407 -12.23595 -12.19866 -11.75087 -11.48896 -11.46598 -11.14774 -11.04169 -10.90960 -10.89417 -10.81974 -10.78434 -10.21278 -10.11100 -9.86400 -9.74830 -9.60160 -9.50838 -9.34696 -9.22775 -8.92555 -8.49389 -6.91057 -5.72363 -3.10198 0.57795 0.74701 2.87132 3.32521 3.40953 3.44700 3.45433 3.48378 3.60056 3.77834 4.17618 4.46234 4.58999 4.72527 4.85935 4.92016 5.01291 5.06472 5.17485 5.21200 5.21595 5.38789 5.41311 5.53240 5.57946 5.60040 5.76745 5.82516 5.85250 5.85678 5.97729 6.07838 6.12343 6.12807 6.31740 6.34154 6.54014 6.60763 6.69774 6.72040 6.81960 6.96732 7.00605 7.27830 7.52727 7.74824 7.80192 7.85710 8.15876 8.50716 9.10889 9.73347 10.53966 11.37409 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.002205 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.697557 B =12694.444288 C =13031.162922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.233 4.233 6 C 0.186 3.814 7 C -0.056 4.056 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.546 6.546 11 N -0.712 5.712 12 C 0.127 3.873 13 H 0.083 0.917 14 C -0.142 4.142 15 C 0.156 3.844 16 H 0.152 0.848 17 C -0.138 4.138 18 C -0.131 4.131 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.589 5.589 22 C -0.210 4.210 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 N -0.515 5.515 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.395 0.605 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 23.415 -2.251 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.255 4.255 6 C 0.040 3.960 7 C -0.094 4.094 8 C -0.172 4.172 9 C 0.295 3.705 10 O -0.424 6.424 11 N -0.362 5.362 12 C 0.021 3.979 13 H 0.101 0.899 14 C -0.182 4.182 15 C 0.050 3.950 16 H 0.169 0.831 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.103 0.897 21 N -0.310 5.310 22 C -0.338 4.338 23 H 0.096 0.904 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.748 3.252 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.213 1.213 30 N -0.231 5.231 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.498 22.886 -2.850 23.961 hybrid contribution 1.048 -0.536 -0.036 1.178 sum -5.450 22.350 -2.886 23.185 Atomic orbital electron populations 1.20577 0.85678 1.04235 1.03942 1.23300 0.98233 0.83341 0.89971 1.68264 1.10220 1.30569 1.15271 1.23229 0.89689 0.98650 0.89810 1.22808 1.03109 0.94135 1.05446 1.21818 0.89563 0.95994 0.88641 1.20365 0.99242 0.89573 1.00235 1.21544 1.02384 0.93765 0.99539 1.20488 0.82808 0.85531 0.81711 1.90703 1.35045 1.79607 1.37012 1.46258 1.43422 1.16843 1.29714 1.22633 0.96373 0.80885 0.98033 0.89865 1.23308 1.01781 0.99455 0.93636 1.23693 0.88695 0.92499 0.90150 0.83070 1.23062 1.00805 0.98760 0.95088 1.22912 0.98140 0.98389 0.97587 1.23168 0.92535 0.86793 0.95563 0.89746 1.46450 1.70898 1.10604 1.03008 1.19016 1.32506 0.89532 0.92783 0.90370 1.24699 1.02128 0.98433 0.95507 1.69454 1.53805 1.31719 1.02258 0.86107 0.79010 0.82629 0.77497 1.21217 1.21595 1.21258 1.68105 1.09599 1.30486 1.14871 0.89610 0.89445 0.89669 0.81484 0.83366 0.88890 0.88308 0.87888 0.89384 0.77038 0.91684 0.92768 0.92665 0.93666 0.93090 0.93060 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.32 36.00 0.37 -0.23 16 2 C 0.32 3.21 7.64 -157.19 -1.20 2.01 16 3 N -0.53 -5.27 10.33 -10.72 -0.11 -5.38 16 4 C 0.15 1.19 11.30 -17.20 -0.19 1.00 16 5 C -0.23 -1.84 9.80 -39.31 -0.39 -2.22 16 6 C 0.19 1.82 6.20 -82.24 -0.51 1.31 16 7 C -0.06 -0.56 4.94 -27.88 -0.14 -0.69 16 8 C -0.13 -1.34 5.57 -27.89 -0.16 -1.50 16 9 C 0.51 7.22 7.83 -10.99 -0.09 7.14 16 10 O -0.55 -9.92 15.64 5.56 0.09 -9.83 16 11 N -0.71 -10.12 3.71 -51.43 -0.19 -10.31 16 12 C 0.13 2.34 3.14 -65.47 -0.21 2.13 16 13 H 0.08 1.74 7.58 -51.93 -0.39 1.34 16 14 C -0.14 -2.67 6.20 -24.23 -0.15 -2.82 16 15 C 0.16 3.49 4.69 -62.80 -0.29 3.20 16 16 H 0.15 3.87 5.57 -51.93 -0.29 3.58 16 17 C -0.14 -2.63 6.44 -24.24 -0.16 -2.79 16 18 C -0.13 -2.39 6.32 -24.24 -0.15 -2.54 16 19 C 0.13 2.68 5.35 -62.81 -0.34 2.35 16 20 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 21 N -0.59 -14.64 2.99 -145.83 -0.44 -15.08 16 22 C -0.21 -5.81 10.59 -15.06 -0.16 -5.96 16 23 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.92 -26.16 10.48 55.49 0.58 -25.58 16 26 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 N -0.52 -5.59 9.94 -6.99 -0.07 -5.66 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.15 0.80 8.01 -52.49 -0.42 0.38 16 36 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 37 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.10 1.02 7.99 -51.93 -0.41 0.60 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.61 7.92 -40.82 -0.32 4.29 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 43 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -32.70 379.80 -10.43 -43.13 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.14 Total: 6.03 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.85 Total: -0.06 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.23 Total: -62.01 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.70 -10.43 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109555639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.778 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds