Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31814 * 119.12256 * 2 1 4 4 C 1.32314 * 120.81586 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.10826 * 359.97438 * 4 3 2 6 6 C 1.38578 * 118.39683 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.44841 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47322 * 124.99823 * 7 6 5 9 9 C 1.50697 * 109.47231 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00125 * 359.72130 * 9 8 7 11 11 N 1.34779 * 120.00233 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00340 * 179.72395 * 11 9 8 13 13 H 1.08997 * 110.55750 * 33.06903 * 12 11 9 14 14 C 1.54848 * 110.62596 * 155.97419 * 12 11 9 15 15 C 1.55852 * 103.44367 * 118.48886 * 14 12 11 16 16 H 1.08999 * 115.55667 * 159.56033 * 15 14 12 17 17 C 1.55839 * 105.06230 * 288.17349 * 15 14 12 18 18 C 1.54852 * 103.44819 * 71.82642 * 17 15 14 19 19 C 1.55839 * 103.44310 * 359.97438 * 18 17 15 20 20 H 1.09002 * 115.56088 * 159.56743 * 19 18 17 21 21 N 1.50238 * 101.05082 * 32.93606 * 15 14 12 22 22 C 1.36936 * 130.83784 * 126.03292 * 21 15 14 23 23 H 1.07999 * 119.99730 * 180.02562 * 22 21 15 24 24 C 1.38810 * 120.00047 * 0.02562 * 22 21 15 25 25 N 1.31619 * 120.00197 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99890 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47196 * 60.00048 * 26 24 22 28 28 H 1.48503 * 109.47130 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47184 * 299.99717 * 26 24 22 30 30 N 1.31783 * 119.12612 * 180.28586 * 2 1 3 31 31 H 1.09001 * 109.46962 * 90.00693 * 1 2 3 32 32 H 1.09005 * 109.47464 * 210.00287 * 1 2 3 33 33 H 1.08998 * 109.47795 * 330.00692 * 1 2 3 34 34 H 1.08003 * 120.44889 * 180.02562 * 4 3 2 35 35 H 1.07993 * 120.80474 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.46918 * 4.99903 * 7 6 5 37 37 H 1.08999 * 109.47154 * 244.99825 * 7 6 5 38 38 H 1.09001 * 109.47421 * 59.99515 * 8 7 6 39 39 H 1.08999 * 109.47008 * 300.00091 * 8 7 6 40 40 H 0.97007 * 119.99684 * 359.71727 * 11 9 8 41 41 H 1.08998 * 110.62258 * 236.97499 * 14 12 11 42 42 H 1.08999 * 110.63041 * 359.97438 * 14 12 11 43 43 H 1.09008 * 110.62325 * 190.31799 * 17 15 14 44 44 H 1.09005 * 110.62636 * 313.33326 * 17 15 14 45 45 H 1.09000 * 110.62548 * 118.48588 * 18 17 15 46 46 H 1.08995 * 110.62321 * 241.35189 * 18 17 15 47 47 H 0.96999 * 120.00103 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4710 1.1906 -0.0005 5 6 4.1808 -0.0001 -0.0005 6 6 3.4712 -1.1904 -0.0005 7 6 4.1961 -2.5116 0.0001 8 6 3.7156 -3.3564 1.1817 9 6 4.4409 -4.6774 1.1826 10 8 5.2577 -4.9213 0.3199 11 7 4.1775 -5.5902 2.1386 12 6 4.8782 -6.8767 2.1360 13 1 5.8918 -6.7598 1.7527 14 6 4.9000 -7.4888 3.5582 15 6 4.1216 -8.8283 3.3882 16 1 4.3040 -9.5790 4.1571 17 6 2.6327 -8.4099 3.1966 18 6 2.6108 -7.7978 1.7744 19 6 4.0896 -7.9291 1.3006 20 1 4.2438 -7.8847 0.2225 21 7 4.4983 -9.2039 1.9832 22 6 5.0457 -10.3538 1.4798 23 1 5.2487 -10.4373 0.4224 24 6 5.3396 -11.4120 2.3287 25 7 5.0916 -11.3104 3.6174 26 14 6.0869 -12.9803 1.6422 27 1 7.3866 -12.6675 0.9956 28 1 6.3044 -13.9495 2.7461 29 1 5.1644 -13.5705 0.6392 30 7 2.1483 -1.1512 -0.0057 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 3.9906 2.1374 -0.0001 35 1 5.2607 -0.0001 -0.0005 36 1 5.2684 -2.3377 0.0900 37 1 3.9904 -3.0393 -0.9312 38 1 2.6433 -3.5303 1.0919 39 1 3.9213 -2.8288 2.1130 40 1 3.5239 -5.3952 2.8285 41 1 5.9243 -7.6781 3.8791 42 1 4.3899 -6.8350 4.2656 43 1 1.9792 -9.2808 3.2500 44 1 2.3442 -7.6661 3.9393 45 1 1.9465 -8.3651 1.1224 46 1 2.3088 -6.7512 1.8115 47 1 5.2973 -12.0498 4.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109555639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = 30.691238 kcal Electronic energy + Delta-G solvation = -27815.475311 eV Core-core repulsion = 23998.527163 eV Total energy + Delta-G solvation = -3816.948148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.06427 -41.43322 -39.84025 -36.10917 -35.40622 -34.33183 -34.19385 -32.54484 -31.00299 -30.70396 -29.52715 -29.15789 -26.87704 -25.93079 -24.13460 -23.04030 -22.62071 -21.68643 -21.06890 -20.11251 -18.95034 -18.55685 -18.18804 -16.99253 -16.86145 -16.77229 -16.63355 -16.20518 -16.06695 -15.96247 -15.64320 -15.00671 -14.59383 -14.20503 -14.11045 -13.87531 -13.63798 -13.52190 -13.44244 -13.23924 -13.12227 -13.00127 -12.85625 -12.78817 -12.58383 -12.37071 -12.24499 -12.01676 -11.90028 -11.78433 -11.55845 -11.50874 -11.17407 -11.03469 -10.77514 -10.75996 -10.31010 -10.19314 -9.94286 -8.85251 -7.79644 -5.18681 -0.05743 0.10899 1.45815 1.48178 1.54205 1.73132 2.23335 2.50867 2.76247 2.96050 3.18604 3.33726 3.47511 3.57808 3.79047 3.96050 4.08845 4.11135 4.15006 4.17207 4.23313 4.27583 4.43754 4.48479 4.51605 4.61541 4.63430 4.67570 4.73440 4.74147 4.82590 4.88511 4.98685 5.00743 5.08089 5.11451 5.12376 5.16211 5.27004 5.34399 5.47191 5.52370 5.56695 5.77795 5.90274 6.08900 6.26492 6.68980 7.05732 7.14961 7.38163 7.69165 8.55577 9.27227 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.002205 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.697557 B =12694.444288 C =13031.162922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.546 5.546 4 C 0.148 3.852 5 C -0.229 4.229 6 C 0.171 3.829 7 C -0.051 4.051 8 C -0.117 4.117 9 C 0.510 3.490 10 O -0.588 6.588 11 N -0.700 5.700 12 C 0.147 3.853 13 H 0.053 0.947 14 C -0.127 4.127 15 C 0.140 3.860 16 H 0.118 0.882 17 C -0.126 4.126 18 C -0.116 4.116 19 C 0.117 3.883 20 H 0.066 0.934 21 N -0.618 5.618 22 C -0.226 4.226 23 H 0.070 0.930 24 C -0.064 4.064 25 N -0.944 5.944 26 Si 0.976 3.024 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.282 1.282 30 N -0.535 5.535 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.200 0.800 35 H 0.174 0.826 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.414 0.586 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.033 0.967 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.089 0.911 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 26.100 -1.670 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.262 5.262 4 C -0.017 4.017 5 C -0.250 4.250 6 C 0.025 3.975 7 C -0.090 4.090 8 C -0.157 4.157 9 C 0.298 3.702 10 O -0.469 6.469 11 N -0.352 5.352 12 C 0.039 3.961 13 H 0.072 0.928 14 C -0.167 4.167 15 C 0.034 3.966 16 H 0.135 0.865 17 C -0.166 4.166 18 C -0.155 4.155 19 C 0.009 3.991 20 H 0.084 0.916 21 N -0.340 5.340 22 C -0.355 4.355 23 H 0.088 0.912 24 C -0.257 4.257 25 N -0.593 5.593 26 Si 0.805 3.195 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.208 1.208 30 N -0.251 5.251 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.217 0.783 35 H 0.191 0.809 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.252 0.748 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.440 25.618 -2.256 26.772 hybrid contribution 1.356 -1.291 -0.276 1.892 sum -6.084 24.327 -2.532 25.204 Atomic orbital electron populations 1.20647 0.84173 1.04858 1.04543 1.23786 0.99400 0.83287 0.90075 1.68327 1.11367 1.30624 1.15839 1.23829 0.89224 1.00067 0.88557 1.23080 1.04370 0.93389 1.04185 1.21846 0.89612 0.96383 0.89621 1.20276 0.99650 0.89708 0.99321 1.21482 1.02058 0.91231 1.00897 1.21201 0.82061 0.86473 0.80477 1.90700 1.37011 1.80523 1.38621 1.46014 1.43482 1.15198 1.30517 1.22034 0.94892 0.82206 0.96954 0.92835 1.23134 1.00607 0.98313 0.94602 1.23616 0.91445 0.93292 0.88254 0.86483 1.22957 0.97847 0.99149 0.96598 1.22814 0.95707 1.00397 0.96628 1.23319 0.94732 0.86135 0.94885 0.91615 1.46714 1.71383 1.11127 1.04781 1.19261 1.32435 0.91078 0.92723 0.91174 1.25417 1.03204 1.01073 0.95973 1.69686 1.54734 1.32003 1.02903 0.85188 0.78213 0.79350 0.76783 1.20971 1.21622 1.20839 1.68091 1.10194 1.31061 1.15718 0.88952 0.89026 0.88796 0.78286 0.80893 0.88376 0.90126 0.86907 0.86762 0.74806 0.93696 0.88536 0.94755 0.89380 0.94130 0.89293 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.32 71.23 0.74 -0.30 16 2 C 0.30 5.57 7.64 138.74 1.06 6.63 16 3 N -0.55 -9.82 10.33 -187.84 -1.94 -11.76 16 4 C 0.15 1.94 11.30 84.71 0.96 2.89 16 5 C -0.23 -3.00 9.80 22.44 0.22 -2.78 16 6 C 0.17 3.00 6.20 42.56 0.26 3.27 16 7 C -0.05 -0.93 4.94 29.85 0.15 -0.78 16 8 C -0.12 -2.03 5.57 29.85 0.17 -1.86 16 9 C 0.51 13.42 7.83 87.66 0.69 14.11 16 10 O -0.59 -21.10 15.64 -3.04 -0.05 -21.15 16 11 N -0.70 -17.95 3.71 -435.01 -1.61 -19.57 16 12 C 0.15 5.28 3.14 46.59 0.15 5.43 16 13 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 14 C -0.13 -4.60 6.20 32.21 0.20 -4.40 16 15 C 0.14 6.25 4.69 46.23 0.22 6.46 16 16 H 0.12 6.14 5.57 -2.39 -0.01 6.13 16 17 C -0.13 -4.58 6.44 32.21 0.21 -4.38 16 18 C -0.12 -4.03 6.32 32.21 0.20 -3.82 16 19 C 0.12 4.91 5.35 46.20 0.25 5.15 16 20 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 21 N -0.62 -31.46 2.99 -615.28 -1.84 -33.29 16 22 C -0.23 -12.90 10.59 84.03 0.89 -12.01 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 25 N -0.94 -55.04 10.48 21.65 0.23 -54.81 16 26 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 27 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 30 N -0.53 -10.65 9.94 -176.03 -1.75 -12.40 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.17 1.29 8.01 -2.91 -0.02 1.26 16 36 H 0.10 1.65 7.90 -2.38 -0.02 1.63 16 37 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.11 1.83 7.99 -2.39 -0.02 1.81 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.41 7.69 7.92 -92.70 -0.73 6.96 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.10 2.65 7.39 -2.39 -0.02 2.63 16 43 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.09 2.44 7.82 -2.38 -0.02 2.42 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 2.40 6.40 -2.39 -0.02 2.39 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -74.65 379.80 2.13 -72.52 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.25 Total: 21.55 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.81 Total: 10.45 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -6.92 Total: -131.83 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.65 2.13 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109555639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.207 kcal (2) G-P(sol) polarization free energy of solvation -74.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds