Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31806 * 119.11989 * 2 1 4 4 C 1.32322 * 120.81654 * 180.02562 * 3 2 1 5 5 C 1.38608 * 119.10300 * 359.97438 * 4 3 2 6 6 C 1.38583 * 118.40073 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.44743 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47212 * 124.99727 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00011 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08993 * 110.55694 * 36.44549 * 12 11 9 14 14 C 1.54849 * 110.62350 * 273.54259 * 12 11 9 15 15 C 1.55836 * 103.44658 * 241.51046 * 14 12 11 16 16 H 1.09005 * 115.55823 * 158.81713 * 15 14 12 17 17 C 1.55844 * 105.06615 * 288.17658 * 15 14 12 18 18 C 1.54855 * 103.44257 * 71.82647 * 17 15 14 19 19 C 1.55843 * 110.62280 * 159.52120 * 12 11 9 20 20 H 1.09001 * 115.56162 * 319.67062 * 19 12 11 21 21 N 1.50239 * 101.05343 * 85.55072 * 19 12 11 22 22 C 1.36933 * 130.84266 * 233.94805 * 21 19 12 23 23 H 1.08000 * 119.99816 * 359.97438 * 22 21 19 24 24 C 1.38803 * 120.00291 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00307 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47228 * 90.00098 * 26 24 22 28 28 H 1.48505 * 109.47192 * 209.99705 * 26 24 22 29 29 H 1.48493 * 109.46900 * 329.99667 * 26 24 22 30 30 N 1.31776 * 119.12355 * 180.29662 * 2 1 3 31 31 H 1.09000 * 109.47499 * 90.00007 * 1 2 3 32 32 H 1.09002 * 109.46934 * 210.00081 * 1 2 3 33 33 H 1.09006 * 109.47411 * 329.99778 * 1 2 3 34 34 H 1.07999 * 120.44503 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.80061 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47060 * 244.99782 * 7 6 5 37 37 H 1.09001 * 109.47380 * 4.99870 * 7 6 5 38 38 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 40 40 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 41 41 H 1.09003 * 110.62947 * 0.02562 * 14 12 11 42 42 H 1.09007 * 110.62457 * 123.02190 * 14 12 11 43 43 H 1.08999 * 110.63063 * 190.31542 * 17 15 14 44 44 H 1.08997 * 110.62776 * 313.34105 * 17 15 14 45 45 H 1.09008 * 110.62273 * 241.51104 * 18 17 15 46 46 H 1.08999 * 110.62559 * 118.49135 * 18 17 15 47 47 H 0.96999 * 120.00202 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 0.0001 -0.0005 6 6 3.4712 -1.1903 -0.0005 7 6 4.1961 -2.5115 0.0001 8 6 3.7157 -3.3563 1.1817 9 6 4.4401 -4.6778 1.1820 10 8 5.2603 -4.9199 0.3220 11 7 4.1766 -5.5906 2.1379 12 6 4.8813 -6.8751 2.1384 13 1 5.9138 -6.7452 1.8145 14 6 4.1506 -7.8985 1.2348 15 6 3.7510 -9.0346 2.2237 16 1 2.9331 -9.6767 1.8966 17 6 5.0881 -9.7530 2.5770 18 6 5.8187 -8.7295 3.4807 19 6 4.8236 -7.5322 3.5503 20 1 4.9504 -6.8510 4.3917 21 7 3.5051 -8.2492 3.4806 22 6 2.4151 -8.2018 4.3081 23 1 2.4268 -7.5653 5.1806 24 6 1.2956 -8.9724 4.0262 25 7 1.2815 -9.7485 2.9632 26 14 -0.1910 -8.9082 5.1554 27 1 -1.1163 -7.8416 4.6955 28 1 -0.8915 -10.2174 5.1267 29 1 0.2528 -8.6146 6.5417 30 7 2.1484 -1.1511 -0.0060 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 3.9905 2.1375 -0.0009 35 1 5.2609 0.0000 -0.0005 36 1 3.9905 -3.0392 -0.9313 37 1 5.2684 -2.3376 0.0900 38 1 3.9214 -2.8287 2.1131 39 1 2.6435 -3.5303 1.0919 40 1 3.5203 -5.3972 2.8255 41 1 3.2641 -7.4503 0.7859 42 1 4.8217 -8.2784 0.4644 43 1 4.8953 -10.6772 3.1217 44 1 5.6674 -9.9512 1.6753 45 1 6.7604 -8.4203 3.0271 46 1 5.9882 -9.1463 4.4736 47 1 0.4990 -10.2867 2.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110851436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = 44.803343 kcal Electronic energy + Delta-G solvation = -27930.567857 eV Core-core repulsion = 24114.231655 eV Total energy + Delta-G solvation = -3816.336202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -41.32314 -39.79662 -38.44102 -35.25930 -33.74780 -33.63208 -32.54418 -31.63477 -29.12943 -28.94382 -28.70478 -27.84898 -25.74764 -24.20264 -23.39834 -22.14219 -21.13400 -19.86371 -19.62929 -18.64035 -17.82719 -17.04387 -16.99452 -16.15602 -15.78247 -15.55675 -15.38406 -15.18561 -14.81673 -14.15627 -14.00768 -13.68967 -13.46027 -13.24099 -13.22939 -12.82524 -12.63369 -12.42861 -12.15760 -12.04481 -11.83074 -11.42391 -11.19154 -11.11702 -11.05396 -10.94683 -10.90688 -10.69687 -10.51199 -10.37100 -10.11139 -9.92587 -9.70486 -9.60619 -9.43284 -9.24106 -9.12254 -8.97250 -8.43504 -6.96211 -5.75746 -3.15011 0.65987 0.83332 2.99292 3.35303 3.40344 3.42566 3.43690 3.59904 3.70239 3.86762 4.27054 4.39528 4.68602 4.80168 4.97194 5.01743 5.11495 5.13100 5.16500 5.28814 5.31672 5.35363 5.53959 5.63589 5.64856 5.68996 5.69729 5.86870 5.88882 5.95973 6.05443 6.11314 6.14606 6.21012 6.31649 6.42634 6.49523 6.60978 6.74749 6.80690 6.83017 6.95237 7.13413 7.33281 7.45797 7.78463 7.89271 8.01287 8.16313 8.63667 9.05796 9.69210 10.50257 11.33201 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.002918 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.116756 B = 9593.074472 C =11277.306669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.320 3.680 3 N -0.528 5.528 4 C 0.151 3.849 5 C -0.234 4.234 6 C 0.187 3.813 7 C -0.054 4.054 8 C -0.132 4.132 9 C 0.511 3.489 10 O -0.556 6.556 11 N -0.705 5.705 12 C 0.129 3.871 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.154 3.846 16 H 0.153 0.847 17 C -0.138 4.138 18 C -0.127 4.127 19 C 0.125 3.875 20 H 0.087 0.913 21 N -0.590 5.590 22 C -0.215 4.215 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.919 5.919 26 Si 0.915 3.085 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.283 1.283 30 N -0.514 5.514 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.402 0.598 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 17.007 -4.622 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.243 5.243 4 C -0.015 4.015 5 C -0.256 4.256 6 C 0.040 3.960 7 C -0.093 4.093 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.435 6.435 11 N -0.354 5.354 12 C 0.023 3.977 13 H 0.095 0.905 14 C -0.182 4.182 15 C 0.047 3.953 16 H 0.169 0.831 17 C -0.178 4.178 18 C -0.167 4.167 19 C 0.016 3.984 20 H 0.105 0.895 21 N -0.311 5.311 22 C -0.343 4.343 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 N -0.230 5.230 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.237 0.763 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.667 16.722 -5.115 18.099 hybrid contribution -0.034 0.197 0.903 0.925 sum 4.633 16.919 -4.212 18.040 Atomic orbital electron populations 1.20589 0.85660 1.04323 1.03928 1.23307 0.98255 0.83310 0.89865 1.68263 1.10192 1.30568 1.15308 1.23216 0.89721 0.98604 0.89928 1.22790 1.03031 0.94145 1.05642 1.21829 0.89573 0.95995 0.88572 1.20354 0.99090 0.89579 1.00251 1.21537 1.02624 0.93742 0.99402 1.20458 0.82716 0.85628 0.81537 1.90657 1.35456 1.79999 1.37410 1.46030 1.42969 1.16552 1.29849 1.22622 0.94750 0.81852 0.98508 0.90535 1.23450 0.98924 0.98211 0.97657 1.23759 0.94685 0.91838 0.85024 0.83056 1.23053 0.98689 0.98283 0.97761 1.22869 0.96907 0.97418 0.99516 1.23160 0.88328 0.93315 0.93572 0.89490 1.46529 1.10828 1.47484 1.26275 1.18987 0.90730 1.21254 1.03330 0.90442 1.24697 0.98255 0.99362 0.98219 1.69461 1.29282 1.30699 1.27219 0.86074 0.82648 0.77001 0.79745 1.21674 1.21701 1.20825 1.68122 1.09622 1.30495 1.14714 0.89616 0.89341 0.89673 0.81525 0.83420 0.88417 0.88986 0.89389 0.87805 0.76310 0.92269 0.92909 0.92637 0.93323 0.93023 0.92469 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.32 36.01 0.37 -0.37 16 2 C 0.32 3.68 7.64 -157.20 -1.20 2.48 16 3 N -0.53 -5.86 10.33 -10.73 -0.11 -5.97 16 4 C 0.15 1.33 11.31 -17.20 -0.19 1.14 16 5 C -0.23 -2.08 9.80 -39.32 -0.39 -2.46 16 6 C 0.19 2.08 6.20 -82.24 -0.51 1.57 16 7 C -0.05 -0.61 4.94 -27.88 -0.14 -0.75 16 8 C -0.13 -1.63 5.57 -27.89 -0.16 -1.78 16 9 C 0.51 8.12 7.83 -10.99 -0.09 8.03 16 10 O -0.56 -10.43 15.70 5.56 0.09 -10.35 16 11 N -0.71 -11.79 5.10 -51.40 -0.26 -12.05 16 12 C 0.13 2.37 2.73 -65.44 -0.18 2.19 16 13 H 0.08 1.41 7.36 -51.93 -0.38 1.03 16 14 C -0.14 -2.91 6.22 -24.24 -0.15 -3.06 16 15 C 0.15 3.47 4.72 -62.80 -0.30 3.18 16 16 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 17 C -0.14 -2.72 6.44 -24.24 -0.16 -2.88 16 18 C -0.13 -2.28 6.44 -24.23 -0.16 -2.43 16 19 C 0.12 2.39 5.04 -62.80 -0.32 2.07 16 20 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 21 N -0.59 -13.80 2.99 -145.82 -0.44 -14.23 16 22 C -0.22 -5.56 10.59 -15.06 -0.16 -5.72 16 23 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.92 -25.62 10.47 55.49 0.58 -25.04 16 26 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 N -0.51 -6.43 9.94 -6.99 -0.07 -6.50 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.15 0.90 8.01 -52.48 -0.42 0.48 16 36 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.33 7.99 -51.93 -0.41 0.92 16 40 H 0.40 6.52 8.62 -40.82 -0.35 6.16 16 41 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 42 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 45 H 0.05 0.81 7.82 -51.92 -0.41 0.41 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -31.40 382.80 -10.52 -41.92 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.25 Total: 9.35 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.81 Total: 0.86 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.30 Total: -63.80 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.40 -10.52 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110851436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.722 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds