Wall clock time and date at job start Tue Mar 31 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99633 * 2 1 4 4 C 1.52997 * 109.46842 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47308 * 64.99900 * 4 3 2 6 6 C 1.42897 * 114.00146 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.50369 * 330.00008 * 6 5 4 8 8 C 1.53121 * 109.53636 * 209.89829 * 6 5 4 9 9 C 1.53113 * 109.16134 * 297.69840 * 8 6 5 10 10 H 1.09001 * 109.54124 * 62.30186 * 9 8 6 11 11 C 1.53009 * 109.50216 * 182.40319 * 9 8 6 12 12 O 1.42903 * 109.46914 * 184.79903 * 11 9 8 13 13 C 1.53034 * 109.27636 * 302.34089 * 9 8 6 14 14 N 1.46843 * 109.52558 * 59.18264 * 13 9 8 15 15 C 1.46898 * 111.00349 * 174.16111 * 14 13 9 16 16 C 1.50695 * 109.47279 * 58.16530 * 15 14 13 17 17 O 1.21278 * 120.00004 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00151 * 180.02562 * 16 15 14 19 19 C 1.46495 * 119.99991 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47421 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99340 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00462 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99464 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47593 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46999 * 120.00371 * 24 22 20 27 27 H 1.48501 * 109.47415 * 240.00436 * 24 22 20 28 28 C 1.46852 * 111.19485 * 298.25934 * 14 13 9 29 29 H 1.08999 * 109.47280 * 300.00370 * 1 2 3 30 30 H 1.08992 * 109.46977 * 60.00749 * 1 2 3 31 31 H 1.09002 * 109.46652 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47263 * 59.99521 * 3 2 1 33 33 H 1.08994 * 109.46517 * 299.99487 * 3 2 1 34 34 H 1.09002 * 109.47404 * 304.99541 * 4 3 2 35 35 H 1.08999 * 109.46855 * 184.99260 * 4 3 2 36 36 H 1.09009 * 109.51934 * 57.59891 * 8 6 5 37 37 H 1.08998 * 109.52650 * 177.78833 * 8 6 5 38 38 H 1.08991 * 109.46768 * 304.79745 * 11 9 8 39 39 H 1.08999 * 109.46696 * 64.80042 * 11 9 8 40 40 H 0.96699 * 113.99513 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.46591 * 299.16485 * 13 9 8 42 42 H 1.09001 * 109.46217 * 179.19661 * 13 9 8 43 43 H 1.08998 * 109.47091 * 178.16469 * 15 14 13 44 44 H 1.09006 * 109.46974 * 298.16330 * 15 14 13 45 45 H 0.96996 * 119.99558 * 359.97438 * 18 16 15 46 46 H 1.08998 * 109.47308 * 299.99600 * 19 18 16 47 47 H 1.09006 * 109.47142 * 59.99696 * 19 18 16 48 48 H 0.97000 * 119.99337 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.46215 * 301.71964 * 28 14 13 50 50 H 1.09001 * 109.45935 * 181.75437 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3220 7 1 5.8789 1.2118 -0.7614 8 6 5.8014 0.4944 -2.7928 9 6 5.1469 -0.6570 -3.5610 10 1 4.0626 -0.5530 -3.5198 11 6 5.6080 -0.6253 -5.0196 12 8 4.9124 -1.6296 -5.7610 13 6 5.5571 -1.9868 -2.9242 14 7 5.1333 -2.0092 -1.5185 15 6 5.3867 -3.3234 -0.9130 16 6 6.8539 -3.6506 -1.0187 17 8 7.6136 -2.8664 -1.5467 18 7 7.3218 -4.8151 -0.5272 19 6 8.7480 -5.1334 -0.6304 20 6 9.0082 -6.4815 -0.0091 21 1 8.1925 -7.0450 0.4193 22 6 10.2872 -6.9960 0.0113 23 7 11.2803 -6.3100 -0.5108 24 14 10.6093 -8.6674 0.7807 25 1 9.3344 -9.2306 1.2930 26 1 11.1784 -9.5816 -0.2418 27 1 11.5714 -8.5190 1.9022 28 6 5.7856 -0.9411 -0.7502 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9783 2.1767 0.0901 36 1 5.4775 1.4453 -3.2161 37 1 6.8857 0.4121 -2.8672 38 1 5.3950 0.3545 -5.4467 39 1 6.6801 -0.8167 -5.0659 40 1 5.1551 -1.6669 -6.6963 41 1 6.6402 -2.0969 -2.9788 42 1 5.0813 -2.8081 -3.4601 43 1 5.0938 -3.3024 0.1367 44 1 4.8064 -4.0829 -1.4371 45 1 6.7142 -5.4424 -0.1051 46 1 9.0407 -5.1542 -1.6801 47 1 9.3286 -4.3741 -0.1063 48 1 12.1801 -6.6718 -0.4961 49 1 6.8676 -1.0561 -0.8149 50 1 5.4758 -1.0030 0.2930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116821958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:23 Heat of formation + Delta-G solvation = -203.700217 kcal Electronic energy + Delta-G solvation = -29820.867391 eV Core-core repulsion = 25654.153595 eV Total energy + Delta-G solvation = -4166.713795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45080 -39.91267 -38.84730 -37.89916 -37.07794 -36.03155 -34.45514 -34.28682 -31.97042 -30.40787 -29.93385 -27.99959 -27.08542 -26.73760 -24.98002 -23.69581 -23.41024 -22.57896 -21.39510 -20.72697 -18.98161 -18.30398 -17.75775 -17.52519 -17.43810 -17.29572 -16.80843 -16.67928 -16.31444 -16.19567 -16.14566 -15.84173 -15.40399 -15.23057 -14.91491 -14.56395 -14.40860 -14.15582 -14.10914 -13.98657 -13.56727 -13.42683 -13.00061 -12.88292 -12.82957 -12.79884 -12.66148 -12.52316 -12.24815 -12.17338 -11.87893 -11.63719 -11.51599 -11.46117 -11.28950 -11.27247 -10.84576 -10.81790 -10.53689 -10.33590 -9.80252 -9.02287 -8.31513 -6.48244 1.41285 1.42230 1.55968 1.71409 2.31239 2.61420 2.70639 2.96839 3.02850 3.03128 3.32969 3.77680 3.86591 4.00785 4.05213 4.18038 4.22043 4.28303 4.36729 4.39116 4.41941 4.51432 4.53115 4.55682 4.62442 4.63646 4.65241 4.71810 4.75195 4.79793 4.90354 4.92159 4.95569 4.98182 5.02709 5.09658 5.21702 5.23304 5.45183 5.51206 5.69758 5.83206 5.98845 6.05841 6.32838 6.49738 6.63293 6.89211 6.93751 7.21284 7.47402 8.80573 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.002732 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.591089 B =10247.555151 C =11405.333328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.064 3.936 4 C 0.055 3.945 5 O -0.371 6.371 6 C 0.102 3.898 7 H 0.085 0.915 8 C -0.106 4.106 9 C -0.070 4.070 10 H 0.075 0.925 11 C 0.083 3.917 12 O -0.591 6.591 13 C 0.051 3.949 14 N -0.496 5.496 15 C 0.043 3.957 16 C 0.464 3.536 17 O -0.588 6.588 18 N -0.708 5.708 19 C 0.269 3.731 20 C -0.556 4.556 21 H 0.082 0.918 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.985 3.015 25 H -0.253 1.253 26 H -0.279 1.279 27 H -0.278 1.278 28 C 0.023 3.977 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.394 0.606 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.407 0.593 46 H -0.016 1.016 47 H -0.014 1.014 48 H 0.269 0.731 49 H 0.041 0.959 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.109 17.209 -1.565 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.013 4.013 4 C -0.022 4.022 5 O -0.290 6.290 6 C 0.044 3.956 7 H 0.102 0.898 8 C -0.144 4.144 9 C -0.089 4.089 10 H 0.093 0.907 11 C 0.005 3.995 12 O -0.399 6.399 13 C -0.077 4.077 14 N -0.217 5.217 15 C -0.089 4.089 16 C 0.251 3.749 17 O -0.470 6.470 18 N -0.358 5.358 19 C 0.146 3.854 20 C -0.593 4.593 21 H 0.100 0.900 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.808 3.192 25 H -0.177 1.177 26 H -0.204 1.204 27 H -0.203 1.203 28 C -0.105 4.105 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.244 0.756 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.243 0.757 46 H 0.002 0.998 47 H 0.004 0.996 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.201 17.516 -1.517 26.780 hybrid contribution 1.714 -0.977 0.037 1.974 sum -18.486 16.539 -1.480 24.849 Atomic orbital electron populations 1.22852 0.80049 1.03328 1.00617 1.87992 1.20939 1.28600 1.95522 1.22657 0.92029 0.84968 1.01619 1.22740 0.93942 0.97885 0.87620 1.88040 1.21190 1.81975 1.37838 1.22043 0.82299 0.94660 0.96640 0.89759 1.21633 1.00074 0.98956 0.93736 1.20956 1.01153 0.94005 0.92771 0.90685 1.22216 0.94727 0.91279 0.91254 1.86462 1.68153 1.58496 1.26811 1.22255 0.99285 0.98181 0.87932 1.62381 1.55729 1.01320 1.02309 1.22422 0.88817 0.93747 1.03880 1.22855 0.93181 0.81244 0.77623 1.90529 1.60835 1.49619 1.46009 1.46402 1.10744 1.20002 1.58663 1.18479 0.77635 0.95008 0.94292 1.21660 0.95101 1.03003 1.39571 0.89973 1.26070 0.95498 1.02580 0.95482 1.70143 1.01017 1.40280 1.45554 0.85112 0.78855 0.77460 0.77813 1.17690 1.20429 1.20335 1.22736 0.97346 0.92798 0.97645 0.92772 0.93632 0.89523 0.89857 0.92425 0.93390 0.89729 0.88970 0.91018 0.91197 0.94225 0.75613 0.93701 0.92504 0.85980 0.86354 0.75749 0.99821 0.99628 0.92256 0.94081 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.29 10.67 -144.34 -1.54 -10.83 16 3 C 0.06 1.05 6.32 71.98 0.45 1.51 16 4 C 0.05 0.99 6.13 71.98 0.44 1.43 16 5 O -0.37 -9.05 9.29 -144.34 -1.34 -10.39 16 6 C 0.10 2.43 2.94 30.65 0.09 2.52 16 7 H 0.08 1.62 7.79 -2.39 -0.02 1.60 16 8 C -0.11 -2.47 5.01 30.67 0.15 -2.31 16 9 C -0.07 -1.90 2.44 -10.74 -0.03 -1.92 16 10 H 0.07 2.26 7.80 -2.39 -0.02 2.25 16 11 C 0.08 1.92 6.43 71.99 0.46 2.38 16 12 O -0.59 -14.38 13.21 -148.98 -1.97 -16.35 16 13 C 0.05 1.71 4.14 86.33 0.36 2.06 16 14 N -0.50 -15.66 4.74 -900.95 -4.27 -19.93 16 15 C 0.04 1.32 5.86 85.56 0.50 1.82 16 16 C 0.46 18.94 7.25 87.65 0.64 19.57 16 17 O -0.59 -28.28 11.62 -3.02 -0.04 -28.32 16 18 N -0.71 -30.68 5.55 -466.80 -2.59 -33.27 16 19 C 0.27 15.01 5.43 85.63 0.46 15.47 16 20 C -0.56 -30.73 9.28 25.60 0.24 -30.49 16 21 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 22 C 0.00 0.18 5.46 84.65 0.46 0.64 16 23 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 24 Si 0.98 42.86 29.54 68.60 2.03 44.88 16 25 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 C 0.02 0.69 4.75 86.32 0.41 1.10 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 35 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.39 5.68 9.12 -74.06 -0.68 5.00 16 41 H 0.04 1.80 5.36 -2.39 -0.01 1.79 16 42 H 0.06 2.01 7.83 -2.39 -0.02 1.99 16 43 H 0.12 3.17 8.06 -2.39 -0.02 3.15 16 44 H 0.12 3.23 8.14 -2.38 -0.02 3.21 16 45 H 0.41 14.76 8.32 -92.71 -0.77 13.99 16 46 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 47 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.04 1.48 6.00 -2.39 -0.01 1.47 16 50 H 0.07 2.04 7.79 -2.39 -0.02 2.02 16 Total: -1.00 -78.25 399.30 -4.05 -82.30 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.51 Total: 32.90 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 5.89 Total: 15.46 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -6.58 Total: -109.64 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -4.88 Total: -65.89 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -78.25 -4.05 -82.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116821958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.400 kcal (2) G-P(sol) polarization free energy of solvation -78.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds