Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47112 * 2 1 4 4 N 1.46500 * 109.47071 * 120.00238 * 2 1 3 5 5 C 1.34774 * 119.99905 * 274.99534 * 4 2 1 6 6 O 1.21586 * 120.00167 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99843 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99939 * 180.02562 * 7 5 4 9 9 C 1.53043 * 109.45743 * 275.02604 * 8 7 5 10 10 C 1.53193 * 109.31096 * 178.59972 * 9 8 7 11 11 N 1.46922 * 108.76488 * 54.65378 * 10 9 8 12 12 C 1.36939 * 120.62881 * 126.35611 * 11 10 9 13 13 H 1.07994 * 120.00424 * 331.86780 * 12 11 10 14 14 C 1.38818 * 119.99866 * 151.85622 * 12 11 10 15 15 N 1.31620 * 119.99841 * 343.08072 * 14 12 11 16 16 Si 1.86790 * 119.99994 * 163.07620 * 14 12 11 17 17 H 1.48506 * 109.47417 * 60.00335 * 16 14 12 18 18 H 1.48501 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47302 * 300.00516 * 16 14 12 20 20 C 1.46927 * 118.74067 * 306.38656 * 11 10 9 21 21 C 1.53039 * 109.46105 * 154.97198 * 8 7 5 22 22 C 1.50711 * 109.47091 * 240.00265 * 2 1 3 23 23 O 1.21280 * 119.99589 * 240.00083 * 22 2 1 24 24 N 1.34772 * 120.00003 * 59.99880 * 22 2 1 25 25 C 1.46495 * 119.99863 * 180.02562 * 24 22 2 26 26 C 1.53001 * 109.47455 * 179.97438 * 25 24 22 27 27 F 1.39892 * 109.47667 * 180.02562 * 26 25 24 28 28 H 1.09006 * 109.47255 * 299.99950 * 1 2 3 29 29 H 1.09004 * 109.47081 * 59.99858 * 1 2 3 30 30 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 31 31 H 0.97004 * 119.99943 * 95.00249 * 4 2 1 32 32 H 0.96999 * 119.99930 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.45684 * 34.99248 * 8 7 5 34 34 H 1.09000 * 109.49643 * 298.56396 * 9 8 7 35 35 H 1.09005 * 109.49420 * 58.66175 * 9 8 7 36 36 H 1.09000 * 109.60002 * 294.86519 * 10 9 8 37 37 H 1.08998 * 109.70135 * 174.50523 * 10 9 8 38 38 H 0.97001 * 120.00034 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.58175 * 293.82020 * 20 11 10 40 40 H 1.09001 * 109.70346 * 173.46702 * 20 11 10 41 41 H 1.09005 * 109.49523 * 301.33476 * 21 8 7 42 42 H 1.08998 * 109.49743 * 61.39644 * 21 8 7 43 43 H 0.97003 * 119.99959 * 359.97438 * 24 22 2 44 44 H 1.08995 * 109.47215 * 300.00102 * 25 24 22 45 45 H 1.09004 * 109.47484 * 60.00235 * 25 24 22 46 46 H 1.09005 * 109.47175 * 300.00493 * 26 25 24 47 47 H 1.09004 * 109.46417 * 59.99784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1613 2.4118 7 7 2.5968 -0.6536 3.4574 8 6 2.7363 0.0771 4.7195 9 6 4.0929 0.7847 4.7517 10 6 4.2208 1.5759 6.0572 11 7 3.9886 0.6652 7.1865 12 6 4.9047 0.5615 8.1990 13 1 5.9492 0.7544 8.0040 14 6 4.4907 0.2087 9.4762 15 7 3.2189 0.2970 9.8036 16 14 5.7385 -0.3914 10.7300 17 1 6.7552 0.6659 10.9618 18 1 5.0469 -0.7022 12.0069 19 1 6.4053 -1.6155 10.2180 20 6 2.7551 -0.1328 7.2085 21 6 2.6435 -0.9046 5.8899 22 6 2.0323 -0.7104 -1.2306 23 8 2.7296 -1.6965 -1.1193 24 7 1.7067 -0.2499 -2.4546 25 6 2.1946 -0.9408 -3.6508 26 6 1.6842 -0.2199 -4.9001 27 9 2.1495 -0.8799 -6.0423 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2490 -1.6318 1.1525 32 1 2.8274 -1.5948 3.4138 33 1 1.9392 0.8161 4.8012 34 1 4.8908 0.0443 4.6951 35 1 4.1678 1.4665 3.9044 36 1 3.4801 2.3754 6.0743 37 1 5.2209 2.0028 6.1317 38 1 2.9296 0.0501 10.6959 39 1 1.8948 0.5274 7.3194 40 1 2.7865 -0.8351 8.0415 41 1 1.6866 -1.4253 5.8530 42 1 3.4548 -1.6292 5.8221 43 1 1.1487 0.5386 -2.5436 44 1 3.2845 -0.9412 -3.6509 45 1 1.8308 -1.9683 -3.6507 46 1 0.5941 -0.2198 -4.8997 47 1 2.0476 0.8078 -4.9003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116913984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = -100.496493 kcal Electronic energy + Delta-G solvation = -28222.618237 eV Core-core repulsion = 23969.212137 eV Total energy + Delta-G solvation = -4253.406100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.185 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.28926 -40.74323 -39.62647 -37.50879 -35.81973 -35.17539 -34.29800 -32.34009 -31.28795 -30.10595 -29.68979 -28.93148 -25.35513 -24.73102 -23.37511 -22.27364 -21.97521 -20.93023 -20.49618 -19.45965 -18.69943 -17.55552 -17.10338 -17.05725 -16.60651 -16.31720 -15.75688 -15.53145 -15.26670 -14.94059 -14.81413 -14.41429 -14.26570 -13.90689 -13.76144 -13.55943 -13.49719 -13.03690 -12.93592 -12.74973 -12.52514 -12.29892 -11.98705 -11.88116 -11.62181 -11.42721 -11.09134 -10.83564 -10.69626 -10.47918 -10.36282 -10.25326 -10.06683 -10.00954 -9.77202 -9.73346 -9.52560 -9.28966 -8.60642 -8.41938 -6.66095 -5.77670 -3.19649 2.06961 2.22459 2.88302 3.32786 3.39865 3.45411 3.46807 3.82046 4.07576 4.08495 4.31295 4.35387 4.51370 4.66443 4.69494 4.79803 5.00649 5.16381 5.25675 5.36033 5.40491 5.46035 5.53874 5.64110 5.70611 5.80602 5.92584 6.11696 6.26407 6.31803 6.38478 6.52764 6.60084 6.63981 6.79940 6.83227 6.91399 7.01354 7.12470 7.34487 7.58547 7.64084 7.81048 8.13231 8.46732 8.71804 9.22855 9.86128 10.43306 11.31260 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.001842 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.671327 B =15193.988819 C =15406.753343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.117 0.883 4 N -0.737 5.737 5 C 0.707 3.293 6 O -0.592 6.592 7 N -0.736 5.736 8 C 0.169 3.831 9 C -0.140 4.140 10 C 0.148 3.852 11 N -0.592 5.592 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.175 3.825 21 C -0.147 4.147 22 C 0.516 3.484 23 O -0.528 6.528 24 N -0.727 5.727 25 C 0.087 3.913 26 C 0.054 3.946 27 F -0.206 7.206 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.404 0.596 32 H 0.393 0.607 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.254 0.746 39 H 0.021 0.979 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.405 0.595 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 -2.253 -27.367 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.134 0.866 4 N -0.395 5.395 5 C 0.407 3.593 6 O -0.470 6.470 7 N -0.389 5.389 8 C 0.066 3.934 9 C -0.180 4.180 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.211 1.211 20 C 0.048 3.952 21 C -0.187 4.187 22 C 0.301 3.699 23 O -0.403 6.403 24 N -0.382 5.382 25 C -0.038 4.038 26 C -0.001 4.001 27 F -0.188 7.188 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.240 0.760 32 H 0.226 0.774 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.240 0.760 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.175 -1.922 -27.053 28.054 hybrid contribution 0.589 -0.899 0.413 1.151 sum -6.586 -2.821 -26.640 27.586 Atomic orbital electron populations 1.22186 0.92937 1.03070 1.03729 1.20473 0.95368 0.97874 0.82444 0.86567 1.44845 1.72554 1.14281 1.07853 1.15902 0.78234 0.85035 0.80161 1.90912 1.57456 1.14164 1.84467 1.45536 1.69997 1.13756 1.09606 1.20932 0.98235 0.94096 0.80177 1.22401 0.96528 0.99732 0.99367 1.20875 0.98938 0.91583 0.86518 1.44082 1.21550 1.44183 1.21707 1.19154 0.88642 1.43001 0.87361 0.91713 1.25051 0.96105 1.01802 0.96722 1.70016 1.14323 1.50797 1.19663 0.86362 0.80703 0.79042 0.80604 1.20894 1.21663 1.21086 1.20739 0.87906 0.93832 0.92702 1.22554 1.00433 0.98454 0.97234 1.20788 0.79851 0.84613 0.84636 1.90734 1.37081 1.26030 1.86467 1.45645 1.54672 1.32662 1.05176 1.21881 1.01083 0.97477 0.83342 1.22049 1.00380 0.96350 0.81333 1.92810 1.90812 1.83302 1.51831 0.90122 0.91362 0.91850 0.76028 0.77424 0.90000 0.92426 0.92714 0.96167 0.92616 0.93577 0.96082 0.89045 0.92750 0.92197 0.75973 0.90016 0.90037 0.89894 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.38 37.16 0.35 -0.77 16 2 C 0.15 1.33 2.98 -69.08 -0.21 1.12 16 3 H 0.12 1.10 7.58 -51.93 -0.39 0.70 16 4 N -0.74 -8.32 4.96 -59.81 -0.30 -8.62 16 5 C 0.71 10.44 8.50 -86.92 -0.74 9.70 16 6 O -0.59 -10.73 15.67 5.29 0.08 -10.65 16 7 N -0.74 -10.61 5.08 -58.63 -0.30 -10.91 16 8 C 0.17 2.98 2.42 -67.89 -0.16 2.82 16 9 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 10 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 11 N -0.59 -14.87 2.99 -172.32 -0.52 -15.38 16 12 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 13 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 15 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 16 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 21 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 22 C 0.52 4.45 7.22 -10.98 -0.08 4.37 16 23 O -0.53 -6.50 15.84 5.56 0.09 -6.41 16 24 N -0.73 -3.62 5.45 -60.29 -0.33 -3.95 16 25 C 0.09 0.44 6.13 -4.04 -0.02 0.41 16 26 C 0.05 0.16 7.67 37.16 0.28 0.45 16 27 F -0.21 -1.35 17.36 2.25 0.04 -1.31 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.27 7.56 -51.93 -0.39 -0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 4.20 7.80 -40.82 -0.32 3.89 16 32 H 0.39 4.70 8.62 -40.82 -0.35 4.35 16 33 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.41 0.77 7.89 -40.82 -0.32 0.45 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -34.54 386.18 -8.49 -43.03 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.52 Total: 4.55 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -1.15 Total: 12.67 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.82 Total: -64.31 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.17 Total: -17.06 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.54 -8.49 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116913984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.464 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds