Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00179 * 2 1 4 4 C 1.53003 * 109.47589 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46799 * 65.00201 * 4 3 2 6 6 C 1.42896 * 113.99850 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47559 * 30.00007 * 6 5 4 8 8 C 1.53005 * 109.47087 * 269.99827 * 6 5 4 9 9 C 1.50701 * 109.47352 * 149.99883 * 6 5 4 10 10 O 1.21280 * 119.99421 * 5.00251 * 9 6 5 11 11 N 1.34770 * 120.00281 * 184.99359 * 9 6 5 12 12 C 1.46506 * 120.00209 * 180.02562 * 11 9 6 13 13 C 1.52992 * 109.47060 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.40993 * 304.99676 * 13 12 11 15 15 C 1.54300 * 109.40278 * 185.16364 * 13 12 11 16 16 N 1.48182 * 110.69242 * 200.49307 * 15 13 12 17 17 C 1.36934 * 118.51685 * 138.77244 * 16 15 13 18 18 H 1.08001 * 120.00284 * 206.11338 * 17 16 15 19 19 C 1.38813 * 119.99777 * 26.11249 * 17 16 15 20 20 N 1.31623 * 120.00099 * 15.52281 * 19 17 16 21 21 Si 1.86796 * 120.00180 * 195.52068 * 19 17 16 22 22 H 1.48506 * 109.46856 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47513 * 119.99728 * 21 19 17 24 24 H 1.48505 * 109.47148 * 240.00168 * 21 19 17 25 25 C 1.44462 * 122.97222 * 318.78704 * 16 15 13 26 26 C 1.54877 * 109.32341 * 88.91952 * 25 16 15 27 27 C 1.47686 * 109.67870 * 290.10013 * 26 25 16 28 28 O 1.40525 * 109.40967 * 64.83671 * 13 12 11 29 29 H 1.09003 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47220 * 299.99685 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99947 * 1 2 3 32 32 H 1.09001 * 109.47349 * 60.00329 * 3 2 1 33 33 H 1.09002 * 109.47322 * 300.00448 * 3 2 1 34 34 H 1.09000 * 109.46913 * 305.00326 * 4 3 2 35 35 H 1.09000 * 109.47673 * 184.99788 * 4 3 2 36 36 H 1.09000 * 109.47251 * 300.00024 * 8 6 5 37 37 H 1.08997 * 109.47127 * 60.00109 * 8 6 5 38 38 H 1.08996 * 109.47406 * 179.97438 * 8 6 5 39 39 H 0.97004 * 120.00208 * 0.02562 * 11 9 6 40 40 H 1.09006 * 109.46998 * 300.00295 * 12 11 9 41 41 H 1.09000 * 109.46883 * 60.00145 * 12 11 9 42 42 H 1.08996 * 109.23002 * 320.79867 * 15 13 12 43 43 H 1.09001 * 109.23337 * 80.21878 * 15 13 12 44 44 H 0.96998 * 120.00016 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.50142 * 208.87266 * 25 16 15 46 46 H 1.09003 * 109.49958 * 328.96573 * 25 16 15 47 47 H 1.09000 * 109.44141 * 50.16665 * 26 25 16 48 48 H 1.09006 * 109.43487 * 170.04201 * 26 25 16 49 49 H 1.09003 * 108.64525 * 181.88354 * 27 26 25 50 50 H 1.09001 * 108.65064 * 299.71921 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5797 -1.2221 6 6 5.3810 0.4192 -1.3247 7 1 5.8043 0.2820 -0.3296 8 6 5.9900 1.6654 -1.9706 9 6 5.6897 -0.7878 -2.1726 10 8 4.7903 -1.3924 -2.7170 11 7 6.9651 -1.1952 -2.3260 12 6 7.2653 -2.3683 -3.1507 13 6 8.7754 -2.6137 -3.1580 14 1 9.2878 -1.7091 -3.4853 15 6 9.1025 -3.7677 -4.1287 16 7 10.4253 -4.3570 -3.8147 17 6 10.5624 -5.7186 -3.8626 18 1 11.3187 -6.2066 -3.2658 19 6 9.7292 -6.4717 -4.6785 20 7 9.0258 -5.8836 -5.6228 21 14 9.6062 -8.3198 -4.4362 22 1 10.4913 -8.7323 -3.3173 23 1 8.2025 -8.6851 -4.1180 24 1 10.0277 -9.0114 -5.6810 25 6 11.5768 -3.5601 -3.4598 26 6 11.5964 -3.3422 -1.9266 27 6 10.4933 -2.4402 -1.5383 28 8 9.2005 -2.9477 -1.8609 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8514 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 5.5668 1.8026 -2.9657 37 1 5.7668 2.5384 -1.3574 38 1 7.0703 1.5433 -2.0485 39 1 7.6845 -0.7118 -1.8903 40 1 6.7576 -3.2410 -2.7397 41 1 6.9202 -2.1938 -4.1699 42 1 8.3364 -4.5381 -4.0416 43 1 9.1134 -3.3859 -5.1496 44 1 8.4439 -6.4099 -6.1931 45 1 12.4859 -4.0782 -3.7652 46 1 11.5208 -2.5952 -3.9637 47 1 11.4756 -4.3009 -1.4223 48 1 12.5481 -2.8973 -1.6356 49 1 10.5431 -2.2718 -0.4625 50 1 10.6299 -1.4845 -2.0443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150417195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -142.310850 kcal Electronic energy + Delta-G solvation = -29449.715548 eV Core-core repulsion = 25285.663795 eV Total energy + Delta-G solvation = -4164.051753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.95326 -38.89954 -38.32159 -37.21779 -35.12856 -34.56089 -32.78570 -32.03246 -30.97509 -29.89917 -28.63264 -26.53609 -25.80723 -25.32867 -24.12021 -22.82524 -22.35841 -20.95016 -20.26776 -19.60080 -17.57025 -17.36816 -16.92175 -16.75177 -16.25981 -15.92897 -15.64121 -15.34621 -15.25851 -14.88287 -14.80110 -14.42699 -14.02384 -13.74688 -13.46187 -13.24674 -12.96190 -12.82769 -12.66840 -12.49435 -12.44501 -12.35504 -12.21232 -11.93853 -11.74500 -11.43183 -11.26696 -11.13055 -10.85734 -10.71447 -10.56075 -10.19681 -10.11259 -10.00695 -9.92210 -9.88375 -9.67022 -9.42714 -8.86048 -8.81093 -8.38607 -6.67974 -5.75838 -3.18727 2.77713 2.85798 3.41461 3.49716 3.51012 3.51258 3.77037 4.28672 4.53044 4.55385 4.74198 4.74504 4.81727 4.91187 4.98025 5.04553 5.11772 5.15450 5.17685 5.30928 5.39163 5.43119 5.45266 5.46714 5.46937 5.54803 5.62838 5.76408 5.83524 5.90224 6.03884 6.13053 6.24149 6.34262 6.38340 6.48713 6.65273 6.76837 6.83082 6.95717 6.97711 7.19492 7.59930 7.66245 7.84414 7.97571 8.40101 8.48538 9.23893 9.90604 10.34459 11.32159 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002555 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.696269 B =10955.070803 C =12117.052826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.064 3.936 4 C 0.060 3.940 5 O -0.348 6.348 6 C 0.071 3.929 7 H 0.085 0.915 8 C -0.170 4.170 9 C 0.510 3.490 10 O -0.517 6.517 11 N -0.720 5.720 12 C 0.126 3.874 13 C 0.056 3.944 14 H 0.047 0.953 15 C 0.165 3.835 16 N -0.586 5.586 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.157 3.843 26 C -0.184 4.184 27 C 0.079 3.921 28 O -0.359 6.359 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.254 0.746 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 19.656 12.062 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.265 6.265 6 C 0.009 3.991 7 H 0.103 0.897 8 C -0.227 4.227 9 C 0.294 3.706 10 O -0.391 6.391 11 N -0.373 5.373 12 C 0.003 3.997 13 C -0.004 4.004 14 H 0.065 0.935 15 C 0.039 3.961 16 N -0.307 5.307 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.029 3.971 26 C -0.224 4.224 27 C 0.002 3.998 28 O -0.278 6.278 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.230 0.770 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.324 18.799 11.492 23.554 hybrid contribution 0.421 -0.271 0.431 0.660 sum -7.903 18.529 11.923 23.408 Atomic orbital electron populations 1.22745 0.81105 1.03003 0.99654 1.88025 1.19548 1.26936 1.95302 1.22523 0.92197 0.85797 1.00767 1.22641 0.93737 0.97545 0.87792 1.88130 1.19476 1.81641 1.37292 1.21899 0.83758 0.94117 0.99327 0.89721 1.22234 1.01223 0.96730 1.02550 1.20274 0.82986 0.85251 0.82114 1.90747 1.45340 1.55942 1.47108 1.45915 1.07425 1.31687 1.52309 1.21589 0.95274 0.87563 0.95323 1.23173 0.92207 0.99223 0.85792 0.93474 1.21635 0.88607 0.93084 0.92738 1.43583 1.03820 1.03122 1.80129 1.19206 1.17734 0.82128 1.19323 0.91741 1.25009 1.00651 0.98052 0.95716 1.70031 1.31025 1.34665 1.19290 0.86239 0.77630 0.85607 0.77364 1.20358 1.21479 1.21811 1.20665 0.91292 0.94225 0.90922 1.22303 0.96916 1.01011 1.02216 1.21299 0.84494 0.95067 0.98957 1.87456 1.31841 1.77850 1.30620 0.89490 0.94337 0.94012 0.91848 0.92329 0.92201 0.91658 0.90974 0.91436 0.90888 0.76963 0.90405 0.90084 0.89751 0.94485 0.93622 0.93150 0.95384 0.91125 0.92408 0.91613 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.65 10.67 -40.08 -0.43 -5.07 16 3 C 0.06 0.57 6.32 37.16 0.23 0.81 16 4 C 0.06 0.55 6.13 37.16 0.23 0.78 16 5 O -0.35 -4.67 9.49 -59.70 -0.57 -5.24 16 6 C 0.07 0.81 3.13 -27.88 -0.09 0.72 16 7 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 8 C -0.17 -1.42 9.48 37.16 0.35 -1.07 16 9 C 0.51 7.97 7.18 -10.99 -0.08 7.89 16 10 O -0.52 -10.72 16.51 -14.30 -0.24 -10.95 16 11 N -0.72 -10.23 5.46 -60.29 -0.33 -10.56 16 12 C 0.13 2.19 5.24 -4.04 -0.02 2.17 16 13 C 0.06 1.03 2.35 -26.05 -0.06 0.97 16 14 H 0.05 0.77 7.20 -51.93 -0.37 0.40 16 15 C 0.17 3.87 4.50 -2.44 -0.01 3.86 16 16 N -0.59 -14.38 2.59 -171.48 -0.44 -14.82 16 17 C -0.25 -6.96 9.43 -15.06 -0.14 -7.10 16 18 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.11 4.88 -17.43 -0.09 0.03 16 20 N -0.91 -26.20 10.98 55.49 0.61 -25.59 16 21 Si 0.90 22.16 29.58 -169.99 -5.03 17.13 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.16 3.18 5.68 -4.14 -0.02 3.15 16 26 C -0.18 -3.13 6.03 -28.31 -0.17 -3.30 16 27 C 0.08 1.22 6.04 34.59 0.21 1.43 16 28 O -0.36 -6.71 9.77 -34.09 -0.33 -7.04 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.53 8.08 -51.93 -0.42 0.12 16 35 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.42 7.87 -51.93 -0.41 0.02 16 38 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 39 H 0.40 4.47 8.25 -40.82 -0.34 4.14 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.08 2.26 6.24 -51.93 -0.32 1.93 16 43 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 46 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.03 0.46 7.27 -51.93 -0.38 0.08 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -35.35 402.09 -8.15 -43.50 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.91 Total: 0.87 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 1.46 Total: 11.71 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.16 Total: -50.97 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.56 Total: -28.31 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.35 -8.15 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150417195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.806 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds