Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00179 * 2 1 4 4 C 1.53003 * 109.47589 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46799 * 65.00201 * 4 3 2 6 6 C 1.42896 * 113.99850 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47559 * 30.00007 * 6 5 4 8 8 C 1.53005 * 109.47087 * 269.99827 * 6 5 4 9 9 C 1.50701 * 109.47352 * 149.99883 * 6 5 4 10 10 O 1.21280 * 119.99421 * 5.00251 * 9 6 5 11 11 N 1.34770 * 120.00281 * 184.99359 * 9 6 5 12 12 C 1.46506 * 120.00209 * 180.02562 * 11 9 6 13 13 C 1.52992 * 109.47060 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.40993 * 304.99676 * 13 12 11 15 15 C 1.54300 * 109.40278 * 185.16364 * 13 12 11 16 16 N 1.48182 * 110.69242 * 200.49307 * 15 13 12 17 17 C 1.36934 * 118.51685 * 138.77244 * 16 15 13 18 18 H 1.08001 * 120.00284 * 206.11338 * 17 16 15 19 19 C 1.38813 * 119.99777 * 26.11249 * 17 16 15 20 20 N 1.31623 * 120.00099 * 15.52281 * 19 17 16 21 21 Si 1.86796 * 120.00180 * 195.52068 * 19 17 16 22 22 H 1.48506 * 109.46856 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47513 * 119.99728 * 21 19 17 24 24 H 1.48505 * 109.47148 * 240.00168 * 21 19 17 25 25 C 1.44462 * 122.97222 * 318.78704 * 16 15 13 26 26 C 1.54877 * 109.32341 * 88.91952 * 25 16 15 27 27 C 1.47686 * 109.67870 * 290.10013 * 26 25 16 28 28 O 1.40525 * 109.40967 * 64.83671 * 13 12 11 29 29 H 1.09003 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47220 * 299.99685 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99947 * 1 2 3 32 32 H 1.09001 * 109.47349 * 60.00329 * 3 2 1 33 33 H 1.09002 * 109.47322 * 300.00448 * 3 2 1 34 34 H 1.09000 * 109.46913 * 305.00326 * 4 3 2 35 35 H 1.09000 * 109.47673 * 184.99788 * 4 3 2 36 36 H 1.09000 * 109.47251 * 300.00024 * 8 6 5 37 37 H 1.08997 * 109.47127 * 60.00109 * 8 6 5 38 38 H 1.08996 * 109.47406 * 179.97438 * 8 6 5 39 39 H 0.97004 * 120.00208 * 0.02562 * 11 9 6 40 40 H 1.09006 * 109.46998 * 300.00295 * 12 11 9 41 41 H 1.09000 * 109.46883 * 60.00145 * 12 11 9 42 42 H 1.08996 * 109.23002 * 320.79867 * 15 13 12 43 43 H 1.09001 * 109.23337 * 80.21878 * 15 13 12 44 44 H 0.96998 * 120.00016 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.50142 * 208.87266 * 25 16 15 46 46 H 1.09003 * 109.49958 * 328.96573 * 25 16 15 47 47 H 1.09000 * 109.44141 * 50.16665 * 26 25 16 48 48 H 1.09006 * 109.43487 * 170.04201 * 26 25 16 49 49 H 1.09003 * 108.64525 * 181.88354 * 27 26 25 50 50 H 1.09001 * 108.65064 * 299.71921 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5797 -1.2221 6 6 5.3810 0.4192 -1.3247 7 1 5.8043 0.2820 -0.3296 8 6 5.9900 1.6654 -1.9706 9 6 5.6897 -0.7878 -2.1726 10 8 4.7903 -1.3924 -2.7170 11 7 6.9651 -1.1952 -2.3260 12 6 7.2653 -2.3683 -3.1507 13 6 8.7754 -2.6137 -3.1580 14 1 9.2878 -1.7091 -3.4853 15 6 9.1025 -3.7677 -4.1287 16 7 10.4253 -4.3570 -3.8147 17 6 10.5624 -5.7186 -3.8626 18 1 11.3187 -6.2066 -3.2658 19 6 9.7292 -6.4717 -4.6785 20 7 9.0258 -5.8836 -5.6228 21 14 9.6062 -8.3198 -4.4362 22 1 10.4913 -8.7323 -3.3173 23 1 8.2025 -8.6851 -4.1180 24 1 10.0277 -9.0114 -5.6810 25 6 11.5768 -3.5601 -3.4598 26 6 11.5964 -3.3422 -1.9266 27 6 10.4933 -2.4402 -1.5383 28 8 9.2005 -2.9477 -1.8609 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8514 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 5.5668 1.8026 -2.9657 37 1 5.7668 2.5384 -1.3574 38 1 7.0703 1.5433 -2.0485 39 1 7.6845 -0.7118 -1.8903 40 1 6.7576 -3.2410 -2.7397 41 1 6.9202 -2.1938 -4.1699 42 1 8.3364 -4.5381 -4.0416 43 1 9.1134 -3.3859 -5.1496 44 1 8.4439 -6.4099 -6.1931 45 1 12.4859 -4.0782 -3.7652 46 1 11.5208 -2.5952 -3.9637 47 1 11.4756 -4.3009 -1.4223 48 1 12.5481 -2.8973 -1.6356 49 1 10.5431 -2.2718 -0.4625 50 1 10.6299 -1.4845 -2.0443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150417195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = -168.884034 kcal Electronic energy + Delta-G solvation = -29450.867848 eV Core-core repulsion = 25285.663795 eV Total energy + Delta-G solvation = -4165.204052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.15889 -40.26099 -39.22812 -38.10529 -36.87603 -36.00134 -34.21497 -33.27280 -32.51239 -30.72862 -30.10692 -27.36613 -27.17912 -27.04072 -25.28898 -23.99391 -23.38211 -22.37317 -21.64094 -21.15170 -18.92757 -18.40979 -18.26050 -17.75902 -17.60740 -17.08591 -16.72594 -16.59103 -16.44153 -16.09871 -15.97827 -15.68327 -15.48999 -15.18551 -14.91307 -14.47757 -14.22773 -13.99932 -13.94462 -13.84723 -13.53059 -13.25657 -13.22978 -13.15443 -13.03074 -12.79199 -12.64562 -12.40027 -12.29903 -12.19167 -11.98849 -11.95682 -11.80094 -11.43150 -11.34574 -11.04374 -10.63326 -10.59746 -10.48576 -10.23860 -10.16564 -8.67250 -7.86336 -5.30942 1.42186 1.45905 1.54539 1.57826 1.81916 2.50437 2.86900 2.90312 2.93771 3.27636 3.57850 3.65957 3.91862 4.04022 4.05397 4.14374 4.15573 4.22318 4.25038 4.28755 4.41443 4.44560 4.47372 4.55261 4.55752 4.59462 4.63255 4.70507 4.78967 4.82402 4.83586 4.84449 4.88265 4.90486 5.16328 5.22237 5.23871 5.27257 5.37991 5.53593 5.62191 5.71471 6.07594 6.28747 6.39624 6.56532 6.59475 7.16933 7.23629 7.93671 8.30952 9.18428 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002555 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.696269 B =10955.070803 C =12117.052826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.056 3.944 4 C 0.053 3.947 5 O -0.387 6.387 6 C 0.076 3.924 7 H 0.116 0.884 8 C -0.163 4.163 9 C 0.503 3.497 10 O -0.579 6.579 11 N -0.702 5.702 12 C 0.137 3.863 13 C 0.080 3.920 14 H 0.080 0.920 15 C 0.171 3.829 16 N -0.603 5.603 17 C -0.257 4.257 18 H 0.062 0.938 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.296 1.296 24 H -0.290 1.290 25 C 0.147 3.853 26 C -0.171 4.171 27 C 0.067 3.933 28 O -0.378 6.378 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.416 0.584 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.012 0.988 44 H 0.247 0.753 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.040 0.960 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 22.690 14.656 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.341 6.341 3 C -0.020 4.020 4 C -0.023 4.023 5 O -0.306 6.306 6 C 0.015 3.985 7 H 0.134 0.866 8 C -0.220 4.220 9 C 0.289 3.711 10 O -0.458 6.458 11 N -0.356 5.356 12 C 0.012 3.988 13 C 0.020 3.980 14 H 0.097 0.903 15 C 0.045 3.955 16 N -0.325 5.325 17 C -0.388 4.388 18 H 0.080 0.920 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.223 1.223 24 H -0.217 1.217 25 C 0.020 3.980 26 C -0.211 4.211 27 C -0.009 4.009 28 O -0.297 6.297 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.836 21.886 14.142 26.939 hybrid contribution 0.040 -1.178 -0.338 1.226 sum -6.796 20.708 13.803 25.798 Atomic orbital electron populations 1.22879 0.79747 1.03359 1.00960 1.87964 1.21370 1.29205 1.95603 1.22786 0.92202 0.84824 1.02178 1.22954 0.94004 0.99181 0.86186 1.88092 1.20577 1.82501 1.39459 1.22005 0.83660 0.92927 0.99924 0.86635 1.22237 1.02009 0.96030 1.01734 1.21281 0.82274 0.85934 0.81565 1.90719 1.47133 1.58176 1.49783 1.45660 1.08007 1.30406 1.51486 1.21195 0.94634 0.87843 0.95161 1.22717 0.92593 0.97842 0.84880 0.90271 1.21382 0.87319 0.93511 0.93253 1.43824 1.05419 1.02754 1.80500 1.19468 1.17064 0.83962 1.18273 0.92013 1.25698 1.01165 1.01714 0.96034 1.70181 1.31949 1.35635 1.20299 0.85330 0.77070 0.81415 0.77400 1.19234 1.22282 1.21706 1.20928 0.89214 0.94262 0.93553 1.22153 0.99827 1.00431 0.98661 1.21606 0.82298 0.95696 1.01322 1.87461 1.33719 1.78563 1.29926 0.89761 0.92001 0.93650 0.88612 0.92548 0.92160 0.87869 0.92876 0.88491 0.88842 0.74640 0.93746 0.91109 0.94160 0.96968 0.94327 0.94099 0.93456 0.94065 0.88422 0.88459 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.24 10.67 -144.35 -1.54 -11.78 16 3 C 0.06 0.92 6.32 71.98 0.45 1.37 16 4 C 0.05 0.85 6.13 71.98 0.44 1.29 16 5 O -0.39 -9.99 9.49 -125.59 -1.19 -11.18 16 6 C 0.08 1.56 3.13 29.85 0.09 1.66 16 7 H 0.12 1.64 7.79 -2.38 -0.02 1.63 16 8 C -0.16 -2.16 9.48 71.98 0.68 -1.48 16 9 C 0.50 15.54 7.18 87.66 0.63 16.17 16 10 O -0.58 -25.08 16.51 15.96 0.26 -24.81 16 11 N -0.70 -19.05 5.46 -463.06 -2.53 -21.57 16 12 C 0.14 4.86 5.24 86.38 0.45 5.31 16 13 C 0.08 2.85 2.35 31.03 0.07 2.92 16 14 H 0.08 2.34 7.20 -2.39 -0.02 2.32 16 15 C 0.17 8.28 4.50 86.50 0.39 8.67 16 16 N -0.60 -29.88 2.59 -696.43 -1.80 -31.68 16 17 C -0.26 -14.36 9.43 84.03 0.79 -13.57 16 18 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 19 C -0.05 -2.94 4.88 84.86 0.41 -2.52 16 20 N -0.93 -56.52 10.98 21.65 0.24 -56.29 16 21 Si 0.96 46.92 29.58 68.60 2.03 48.95 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 C 0.15 5.70 5.68 87.40 0.50 6.20 16 26 C -0.17 -5.26 6.03 29.57 0.18 -5.08 16 27 C 0.07 1.78 6.04 70.32 0.42 2.20 16 28 O -0.38 -13.34 9.77 -144.91 -1.42 -14.75 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 35 H 0.10 0.83 7.87 -2.39 -0.02 0.81 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.75 7.87 -2.39 -0.02 0.73 16 38 H 0.09 0.85 7.93 -2.39 -0.02 0.83 16 39 H 0.42 7.96 8.25 -92.71 -0.76 7.19 16 40 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.04 2.28 6.24 -2.39 -0.01 2.26 16 43 H 0.01 0.64 8.02 -2.39 -0.02 0.62 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.04 1.63 7.97 -2.39 -0.02 1.61 16 46 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.07 1.40 7.27 -2.39 -0.02 1.38 16 Total: -1.00 -83.51 402.09 0.97 -82.54 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.15 Total: 15.75 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.77 Total: 24.83 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.09 Total: -109.54 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -3.88 Total: -62.53 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -83.51 0.97 -82.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150417195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.344 kcal (2) G-P(sol) polarization free energy of solvation -83.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds