Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99882 * 2 1 4 4 C 1.53001 * 109.47136 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46639 * 64.99886 * 4 3 2 6 6 C 1.42903 * 113.99446 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47457 * 29.99822 * 6 5 4 8 8 C 1.53000 * 109.47003 * 270.00075 * 6 5 4 9 9 C 1.50700 * 109.47140 * 150.00421 * 6 5 4 10 10 O 1.21278 * 120.00225 * 4.99331 * 9 6 5 11 11 N 1.34780 * 120.00000 * 184.99886 * 9 6 5 12 12 C 1.46496 * 119.99821 * 179.97438 * 11 9 6 13 13 C 1.53000 * 109.47400 * 180.02562 * 12 11 9 14 14 H 1.08999 * 108.45018 * 57.86801 * 13 12 11 15 15 C 1.46916 * 108.62509 * 175.75743 * 13 12 11 16 16 N 1.49896 * 106.62166 * 177.93370 * 15 13 12 17 17 C 1.36941 * 120.48951 * 111.40637 * 16 15 13 18 18 H 1.08006 * 120.00041 * 155.30228 * 17 16 15 19 19 C 1.38811 * 120.00063 * 335.29597 * 17 16 15 20 20 N 1.31614 * 120.00004 * 340.87567 * 19 17 16 21 21 Si 1.86799 * 119.99944 * 160.87821 * 19 17 16 22 22 H 1.48504 * 109.47182 * 60.00296 * 21 19 17 23 23 H 1.48505 * 109.47224 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47325 * 300.00190 * 21 19 17 25 25 C 1.43416 * 118.87571 * 291.08846 * 16 15 13 26 26 C 1.55331 * 116.08470 * 89.55827 * 25 16 15 27 27 C 1.55192 * 108.87384 * 319.56942 * 26 25 16 28 28 O 1.39639 * 110.56590 * 322.14719 * 27 26 25 29 29 H 1.09008 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47549 * 299.99886 * 1 2 3 31 31 H 1.09005 * 109.46987 * 60.00576 * 1 2 3 32 32 H 1.09004 * 109.46793 * 59.99967 * 3 2 1 33 33 H 1.09000 * 109.46867 * 299.99520 * 3 2 1 34 34 H 1.09000 * 109.46996 * 305.00214 * 4 3 2 35 35 H 1.08998 * 109.47430 * 184.99894 * 4 3 2 36 36 H 1.09001 * 109.47690 * 60.00058 * 8 6 5 37 37 H 1.08999 * 109.46979 * 180.02562 * 8 6 5 38 38 H 1.09001 * 109.47303 * 300.00100 * 8 6 5 39 39 H 0.96995 * 119.99975 * 359.97438 * 11 9 6 40 40 H 1.08997 * 109.47528 * 60.00108 * 12 11 9 41 41 H 1.09010 * 109.47215 * 299.99934 * 12 11 9 42 42 H 1.09005 * 109.98613 * 297.23871 * 15 13 12 43 43 H 1.09003 * 109.98967 * 58.60027 * 15 13 12 44 44 H 0.97005 * 120.00063 * 179.97438 * 20 19 17 45 45 H 1.09008 * 108.12888 * 327.90773 * 25 16 15 46 46 H 1.09000 * 108.13216 * 211.21120 * 25 16 15 47 47 H 1.08995 * 109.56797 * 79.38950 * 26 25 16 48 48 H 1.09007 * 109.57044 * 199.75543 * 26 25 16 49 49 H 1.08995 * 109.25155 * 82.42459 * 27 26 25 50 50 H 1.09000 * 109.25822 * 201.86261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9657 0.5793 -1.2202 6 6 5.3821 0.4188 -1.3215 7 1 5.8045 0.2820 -0.3260 8 6 5.9916 1.6647 -1.9674 9 6 5.6914 -0.7885 -2.1688 10 8 4.7925 -1.3934 -2.7137 11 7 6.9671 -1.1961 -2.3208 12 6 7.2677 -2.3701 -3.1440 13 6 8.7779 -2.6156 -3.1501 14 1 9.1098 -2.7490 -2.1205 15 6 9.0491 -3.8527 -3.8947 16 7 10.5383 -4.0222 -3.9166 17 6 11.1323 -5.0389 -3.2175 18 1 12.0981 -5.4128 -3.5240 19 6 10.4932 -5.5889 -2.1148 20 7 9.5316 -4.9228 -1.5115 21 14 10.9979 -7.2743 -1.4872 22 1 12.4301 -7.2482 -1.0956 23 1 10.1693 -7.6319 -0.3078 24 1 10.7960 -8.2824 -2.5586 25 6 11.3283 -3.1063 -4.6873 26 6 11.8072 -1.8273 -3.9472 27 6 10.6535 -1.3043 -3.0507 28 8 9.4229 -1.4670 -3.6903 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.7679 2.5380 -1.3547 37 1 7.0719 1.5420 -2.0451 38 1 5.5692 1.8015 -2.9629 39 1 7.6860 -0.7122 -1.8853 40 1 6.9233 -2.1969 -4.1635 41 1 6.7598 -3.2424 -2.7322 42 1 8.5838 -4.7002 -3.3912 43 1 8.6671 -3.7667 -4.9119 44 1 9.0847 -5.3073 -0.7412 45 1 10.7419 -2.7977 -5.5528 46 1 12.2081 -3.6383 -5.0489 47 1 12.6716 -2.0662 -3.3277 48 1 12.0781 -1.0635 -4.6762 49 1 10.6473 -1.8594 -2.1127 50 1 10.8125 -0.2466 -2.8407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150417196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -138.706695 kcal Electronic energy + Delta-G solvation = -29816.677912 eV Core-core repulsion = 25652.782447 eV Total energy + Delta-G solvation = -4163.895465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.83906 -38.95677 -38.25195 -37.11745 -35.01370 -34.44260 -32.51525 -31.82856 -31.01388 -29.78903 -28.53308 -26.48902 -25.76189 -25.31927 -23.99659 -22.75439 -22.31529 -20.78146 -19.97387 -19.58125 -17.47618 -17.24828 -16.94968 -16.77117 -16.02237 -15.80677 -15.51655 -15.10462 -15.06986 -14.80185 -14.68424 -14.24728 -14.06723 -13.84573 -13.42056 -13.14124 -12.99142 -12.77818 -12.56683 -12.48257 -12.37264 -12.17034 -11.94929 -11.83513 -11.41580 -11.35113 -11.20191 -11.17401 -10.83235 -10.73389 -10.49478 -10.16671 -10.01053 -9.95988 -9.86442 -9.68201 -9.50216 -9.28554 -8.79602 -8.62163 -8.49040 -6.81596 -5.92032 -3.31028 2.92588 3.02001 3.34146 3.41119 3.42938 3.56379 3.92725 4.43749 4.65343 4.71677 4.83303 4.88524 4.93735 5.01415 5.05339 5.11498 5.17159 5.23597 5.25105 5.28951 5.42135 5.49935 5.54294 5.56982 5.73400 5.81837 5.92347 5.97898 6.04281 6.15567 6.33822 6.42563 6.48946 6.59289 6.67051 6.71380 6.81379 6.87846 6.94235 6.96644 7.05359 7.13003 7.33764 7.71724 7.86934 8.14336 8.32791 8.56767 9.07537 9.75538 10.29575 11.16935 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015143 B = 0.002732 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.581587 B =10244.933142 C =11463.382925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.059 3.941 5 O -0.348 6.348 6 C 0.070 3.930 7 H 0.084 0.916 8 C -0.169 4.169 9 C 0.510 3.490 10 O -0.525 6.525 11 N -0.712 5.712 12 C 0.123 3.877 13 C 0.061 3.939 14 H 0.108 0.892 15 C 0.143 3.857 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.161 3.839 26 C -0.172 4.172 27 C 0.067 3.933 28 O -0.369 6.369 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.019 0.981 44 H 0.256 0.744 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 15.305 4.202 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.012 4.012 4 C -0.018 4.018 5 O -0.266 6.266 6 C 0.009 3.991 7 H 0.102 0.898 8 C -0.227 4.227 9 C 0.294 3.706 10 O -0.400 6.400 11 N -0.365 5.365 12 C -0.001 4.001 13 C 0.002 3.998 14 H 0.125 0.875 15 C 0.018 3.982 16 N -0.308 5.308 17 C -0.379 4.379 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.552 5.552 21 Si 0.735 3.265 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.032 3.968 26 C -0.213 4.213 27 C -0.010 4.010 28 O -0.288 6.288 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.266 14.653 3.631 18.256 hybrid contribution 0.784 -0.318 1.104 1.391 sum -9.482 14.335 4.735 17.828 Atomic orbital electron populations 1.22742 0.81195 1.02942 0.99622 1.88031 1.19470 1.26988 1.95295 1.22527 0.92271 0.85732 1.00706 1.22633 0.93629 0.97575 0.87918 1.88120 1.19637 1.81606 1.37227 1.21910 0.83540 0.94297 0.99379 0.89783 1.22226 1.01493 0.96591 1.02366 1.20243 0.83110 0.85172 0.82099 1.90711 1.45546 1.56156 1.47610 1.45849 1.07191 1.31605 1.51831 1.21705 0.96601 0.87277 0.94549 1.22206 0.89033 0.87012 1.01518 0.87489 1.20709 0.84758 0.96849 0.95854 1.44025 1.00640 1.29954 1.56167 1.19220 1.04007 1.08786 1.05928 0.91391 1.24898 0.99460 0.99384 0.95767 1.69847 1.27587 1.36368 1.21447 0.86332 0.77769 0.84547 0.77897 1.21069 1.21630 1.21081 1.20366 0.94382 0.89070 0.92945 1.23583 0.98269 0.99746 0.99720 1.22336 0.84721 0.98044 0.95947 1.87517 1.31337 1.45968 1.63964 0.89535 0.94359 0.94054 0.91898 0.92358 0.92216 0.91683 0.91584 0.90656 0.91094 0.76747 0.91992 0.90368 0.87809 0.96256 0.93391 0.95008 0.94912 0.92525 0.93218 0.91912 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.85 10.67 -40.09 -0.43 -5.27 16 3 C 0.06 0.62 6.32 37.16 0.23 0.86 16 4 C 0.06 0.60 6.13 37.16 0.23 0.83 16 5 O -0.35 -5.03 9.49 -59.70 -0.57 -5.60 16 6 C 0.07 0.91 3.13 -27.88 -0.09 0.82 16 7 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 8 C -0.17 -1.70 9.48 37.16 0.35 -1.35 16 9 C 0.51 8.71 7.18 -10.98 -0.08 8.63 16 10 O -0.52 -11.37 16.51 -14.30 -0.24 -11.60 16 11 N -0.71 -11.58 5.39 -60.29 -0.33 -11.90 16 12 C 0.12 2.31 5.24 -4.04 -0.02 2.29 16 13 C 0.06 1.23 1.94 -29.65 -0.06 1.17 16 14 H 0.11 2.42 5.21 -51.93 -0.27 2.14 16 15 C 0.14 3.25 4.71 -5.06 -0.02 3.22 16 16 N -0.59 -14.01 2.59 -174.70 -0.45 -14.46 16 17 C -0.25 -6.48 9.61 -15.06 -0.14 -6.63 16 18 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.91 -23.58 9.54 55.49 0.53 -23.05 16 21 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.16 3.38 5.34 -4.44 -0.02 3.36 16 26 C -0.17 -3.16 6.75 -24.33 -0.16 -3.33 16 27 C 0.07 1.23 6.37 38.32 0.24 1.47 16 28 O -0.37 -7.10 9.54 -31.93 -0.30 -7.40 16 29 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 36 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 37 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 5.63 8.11 -40.82 -0.33 5.30 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.10 2.59 6.03 -51.93 -0.31 2.27 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 45 H 0.03 0.65 7.99 -51.92 -0.41 0.24 16 46 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -31.71 398.15 -8.09 -39.80 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.76 Total: 4.93 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 1.48 Total: 12.72 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.25 Total: -49.42 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.53 Total: -29.88 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.71 -8.09 -39.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150417196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.903 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds