Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00505 * 2 1 4 4 C 1.52998 * 109.47486 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47193 * 64.99649 * 4 3 2 6 6 C 1.42907 * 113.99997 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46651 * 329.99978 * 6 5 4 8 8 C 1.52990 * 109.47147 * 89.99898 * 6 5 4 9 9 C 1.50701 * 109.47117 * 210.00247 * 6 5 4 10 10 O 1.21284 * 119.99751 * 355.00048 * 9 6 5 11 11 N 1.34775 * 120.00224 * 174.99491 * 9 6 5 12 12 C 1.46494 * 120.00086 * 179.97438 * 11 9 6 13 13 C 1.53002 * 109.47244 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.40421 * 304.84233 * 13 12 11 15 15 C 1.54293 * 109.40553 * 185.00254 * 13 12 11 16 16 N 1.48180 * 110.68974 * 200.49447 * 15 13 12 17 17 C 1.36941 * 118.51518 * 138.77364 * 16 15 13 18 18 H 1.08003 * 119.99499 * 319.23792 * 17 16 15 19 19 C 1.38809 * 120.00152 * 139.22916 * 17 16 15 20 20 N 1.31617 * 119.99598 * 156.54382 * 19 17 16 21 21 Si 1.86803 * 119.99960 * 336.53892 * 19 17 16 22 22 H 1.48498 * 109.46786 * 95.52230 * 21 19 17 23 23 H 1.48503 * 109.46880 * 215.52089 * 21 19 17 24 24 H 1.48494 * 109.47187 * 335.52209 * 21 19 17 25 25 C 1.44456 * 122.97492 * 318.79563 * 16 15 13 26 26 C 1.54877 * 109.33047 * 88.91459 * 25 16 15 27 27 C 1.47681 * 109.67791 * 290.10299 * 26 25 16 28 28 O 1.40524 * 109.40200 * 64.59699 * 13 12 11 29 29 H 1.09008 * 109.46926 * 59.99759 * 1 2 3 30 30 H 1.08994 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47162 * 300.00555 * 1 2 3 32 32 H 1.09002 * 109.47021 * 59.99629 * 3 2 1 33 33 H 1.09004 * 109.46961 * 300.00119 * 3 2 1 34 34 H 1.09003 * 109.46750 * 304.99697 * 4 3 2 35 35 H 1.08998 * 109.47225 * 185.00111 * 4 3 2 36 36 H 1.09005 * 109.47667 * 299.99817 * 8 6 5 37 37 H 1.08999 * 109.47288 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.47279 * 60.00465 * 8 6 5 39 39 H 0.96996 * 119.99277 * 0.02562 * 11 9 6 40 40 H 1.08998 * 109.47514 * 300.00555 * 12 11 9 41 41 H 1.09002 * 109.46960 * 60.00736 * 12 11 9 42 42 H 1.08994 * 109.23386 * 320.80391 * 15 13 12 43 43 H 1.08992 * 109.23017 * 80.22150 * 15 13 12 44 44 H 0.97004 * 119.99727 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.49488 * 208.87013 * 25 16 15 46 46 H 1.08998 * 109.49506 * 328.95576 * 25 16 15 47 47 H 1.08998 * 109.43245 * 50.17054 * 26 25 16 48 48 H 1.08998 * 109.43384 * 170.04083 * 26 25 16 49 49 H 1.09001 * 108.64270 * 181.88128 * 27 26 25 50 50 H 1.09003 * 108.64562 * 299.71876 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3812 0.4189 -1.3245 7 1 5.8781 1.2104 -0.7635 8 6 5.7830 -0.9417 -0.7518 9 6 5.7918 0.4957 -2.7725 10 8 4.9471 0.5795 -3.6387 11 7 7.0977 0.4712 -3.1048 12 6 7.4969 0.5452 -4.5124 13 6 9.0229 0.4981 -4.6129 14 1 9.4509 1.2906 -3.9992 15 6 9.4463 0.7024 -6.0825 16 7 10.8179 0.1892 -6.3083 17 6 11.0755 -0.5027 -7.4617 18 1 10.3538 -1.2126 -7.8380 19 6 12.2639 -0.2914 -8.1472 20 7 12.7353 -1.2223 -8.9493 21 14 13.1939 1.3142 -7.9312 22 1 14.2461 1.1415 -6.8976 23 1 13.8241 1.6983 -9.2198 24 1 12.2509 2.3789 -7.5045 25 6 11.8957 0.3852 -5.3666 26 6 11.9038 -0.7804 -4.3468 27 6 10.7268 -0.6745 -3.4611 28 8 9.4828 -0.7472 -4.1521 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8514 0.5681 0.8410 35 1 3.9786 2.1763 0.0889 36 1 5.4860 -0.9972 0.2955 37 1 6.8633 -1.0640 -0.8297 38 1 5.2861 -1.7332 -1.3129 39 1 7.7732 0.4038 -2.4120 40 1 7.0710 -0.2983 -5.0557 41 1 7.1326 1.4772 -4.9448 42 1 8.7524 0.1706 -6.7334 43 1 9.4178 1.7658 -6.3198 44 1 13.5655 -1.0745 -9.4287 45 1 12.8457 0.4079 -5.9006 46 1 11.7514 1.3284 -4.8398 47 1 11.8715 -1.7299 -4.8811 48 1 12.8135 -0.7324 -3.7484 49 1 10.7670 -1.4820 -2.7301 50 1 10.7752 0.2758 -2.9293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150417197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -139.473478 kcal Electronic energy + Delta-G solvation = -29239.764492 eV Core-core repulsion = 25075.835777 eV Total energy + Delta-G solvation = -4163.928715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.12992 -39.11390 -38.45834 -37.33210 -35.43026 -34.73036 -32.81887 -31.95234 -31.64706 -30.01732 -28.92574 -26.62071 -26.19585 -25.45865 -24.21868 -22.86992 -22.31021 -21.24275 -20.54948 -19.87582 -17.68294 -17.46303 -17.03492 -16.64397 -16.51757 -16.15979 -15.79790 -15.68358 -15.36846 -15.24657 -14.68411 -14.65067 -14.43687 -13.83462 -13.58088 -13.40940 -13.23156 -12.99751 -12.78955 -12.61235 -12.49457 -12.39300 -12.35886 -12.05246 -11.94488 -11.73067 -11.71673 -11.30103 -11.11058 -10.94681 -10.55000 -10.36103 -10.19441 -10.13954 -10.04196 -9.86301 -9.65318 -9.58005 -9.06783 -9.01536 -8.50313 -6.77591 -6.00569 -3.43142 2.57672 2.71691 3.28364 3.40127 3.44647 3.49725 3.64643 4.06354 4.46095 4.50740 4.62420 4.65638 4.75083 4.79164 4.79489 4.93594 4.97147 5.04358 5.09981 5.21252 5.23451 5.26659 5.31349 5.35826 5.38277 5.43420 5.47502 5.50446 5.72722 5.74883 5.84511 5.88043 6.02890 6.08838 6.22012 6.36869 6.39048 6.51950 6.64693 6.72114 6.72353 6.84635 6.99376 7.45932 7.74435 8.09335 8.20081 8.41229 9.03011 9.71128 10.07588 11.14874 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.002113 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.558450 B =13249.163971 C =13544.159692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.348 6.348 6 C 0.072 3.928 7 H 0.083 0.917 8 C -0.169 4.169 9 C 0.512 3.488 10 O -0.520 6.520 11 N -0.720 5.720 12 C 0.124 3.876 13 C 0.066 3.934 14 H 0.055 0.945 15 C 0.130 3.870 16 N -0.596 5.596 17 C -0.270 4.270 18 H 0.076 0.924 19 C 0.038 3.962 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.271 1.271 25 C 0.146 3.854 26 C -0.180 4.180 27 C 0.079 3.921 28 O -0.356 6.356 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.515 6.454 23.208 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.266 6.266 6 C 0.010 3.990 7 H 0.101 0.899 8 C -0.227 4.227 9 C 0.296 3.704 10 O -0.395 6.395 11 N -0.373 5.373 12 C 0.000 4.000 13 C 0.005 3.995 14 H 0.073 0.927 15 C 0.004 3.996 16 N -0.319 5.319 17 C -0.399 4.399 18 H 0.094 0.906 19 C -0.163 4.163 20 N -0.537 5.537 21 Si 0.705 3.295 22 H -0.215 1.215 23 H -0.228 1.228 24 H -0.195 1.195 25 C 0.019 3.981 26 C -0.220 4.220 27 C 0.002 3.998 28 O -0.274 6.274 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.160 6.083 22.255 28.168 hybrid contribution 1.242 1.356 0.635 1.946 sum -14.917 7.439 22.891 28.317 Atomic orbital electron populations 1.22748 0.81019 1.02924 0.99848 1.87965 1.19638 1.27174 1.95366 1.22539 0.92139 0.85670 1.00988 1.22640 0.93757 0.97401 0.87847 1.88137 1.19304 1.81594 1.37537 1.21884 0.83987 0.99025 0.94062 0.89876 1.22216 1.02217 0.96436 1.01832 1.20315 0.82626 0.76906 0.90507 1.90734 1.50445 1.47655 1.50641 1.45847 1.06769 1.75316 1.09408 1.21580 0.93793 1.03147 0.81454 1.22795 0.92096 0.86658 0.97914 0.92733 1.21874 0.88135 0.96961 0.92614 1.43785 1.04481 1.64464 1.19187 1.18800 1.05081 1.16301 0.99704 0.90626 1.25526 0.97719 0.96929 0.96092 1.69898 1.20754 1.31930 1.31112 0.86957 0.79507 0.87038 0.76040 1.21469 1.22782 1.19546 1.21084 0.92655 0.93682 0.90631 1.22171 0.96594 1.03960 0.99281 1.21353 0.85058 1.00000 0.93365 1.87453 1.36164 1.28997 1.74746 0.93908 0.89534 0.94267 0.91766 0.92129 0.92191 0.91636 0.91297 0.90833 0.90825 0.76689 0.90166 0.90139 0.91309 0.95259 0.92725 0.92433 0.95219 0.90053 0.92180 0.91064 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.97 10.67 -40.08 -0.43 -4.39 16 3 C 0.06 0.51 6.32 37.16 0.23 0.74 16 4 C 0.06 0.49 6.13 37.16 0.23 0.72 16 5 O -0.35 -4.26 9.49 -59.70 -0.57 -4.83 16 6 C 0.07 0.73 3.13 -27.89 -0.09 0.64 16 7 H 0.08 0.58 7.79 -51.93 -0.40 0.18 16 8 C -0.17 -1.46 9.48 37.15 0.35 -1.10 16 9 C 0.51 6.94 7.18 -10.99 -0.08 6.87 16 10 O -0.52 -9.50 16.51 -14.31 -0.24 -9.74 16 11 N -0.72 -8.60 5.45 -60.30 -0.33 -8.92 16 12 C 0.12 1.74 5.24 -4.04 -0.02 1.72 16 13 C 0.07 1.01 2.35 -26.05 -0.06 0.95 16 14 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 15 C 0.13 2.52 6.12 -2.44 -0.01 2.51 16 16 N -0.60 -13.86 2.11 -171.49 -0.36 -14.22 16 17 C -0.27 -7.50 9.67 -15.06 -0.15 -7.65 16 18 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 19 C 0.04 1.09 5.20 -17.43 -0.09 1.00 16 20 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 21 Si 0.87 21.87 25.27 -169.99 -4.30 17.58 16 22 H -0.29 -6.93 6.71 56.52 0.38 -6.55 16 23 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.15 3.07 4.47 -4.14 -0.02 3.05 16 26 C -0.18 -3.23 6.03 -28.31 -0.17 -3.40 16 27 C 0.08 1.17 6.04 34.59 0.21 1.38 16 28 O -0.36 -6.00 9.76 -34.09 -0.33 -6.33 16 29 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 35 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.07 0.48 7.87 -51.93 -0.41 0.08 16 37 H 0.07 0.53 7.92 -51.93 -0.41 0.11 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 3.74 8.24 -40.82 -0.34 3.40 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.38 7.75 -51.93 -0.40 0.98 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 1.34 3.66 -51.93 -0.19 1.15 16 46 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 47 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.03 0.43 7.27 -51.93 -0.38 0.05 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -35.84 398.35 -7.13 -42.97 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.81 Total: -0.45 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 1.45 Total: 8.75 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.08 Total: -49.57 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.56 Total: -25.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.30 Total: 17.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.84 -7.13 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150417197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.501 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds