Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00505 * 2 1 4 4 C 1.52998 * 109.47486 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47193 * 64.99649 * 4 3 2 6 6 C 1.42907 * 113.99997 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46651 * 329.99978 * 6 5 4 8 8 C 1.52990 * 109.47147 * 89.99898 * 6 5 4 9 9 C 1.50701 * 109.47117 * 210.00247 * 6 5 4 10 10 O 1.21284 * 119.99751 * 355.00048 * 9 6 5 11 11 N 1.34775 * 120.00224 * 174.99491 * 9 6 5 12 12 C 1.46494 * 120.00086 * 179.97438 * 11 9 6 13 13 C 1.53002 * 109.47244 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.40421 * 304.84233 * 13 12 11 15 15 C 1.54293 * 109.40553 * 185.00254 * 13 12 11 16 16 N 1.48180 * 110.68974 * 200.49447 * 15 13 12 17 17 C 1.36941 * 118.51518 * 138.77364 * 16 15 13 18 18 H 1.08003 * 119.99499 * 319.23792 * 17 16 15 19 19 C 1.38809 * 120.00152 * 139.22916 * 17 16 15 20 20 N 1.31617 * 119.99598 * 156.54382 * 19 17 16 21 21 Si 1.86803 * 119.99960 * 336.53892 * 19 17 16 22 22 H 1.48498 * 109.46786 * 95.52230 * 21 19 17 23 23 H 1.48503 * 109.46880 * 215.52089 * 21 19 17 24 24 H 1.48494 * 109.47187 * 335.52209 * 21 19 17 25 25 C 1.44456 * 122.97492 * 318.79563 * 16 15 13 26 26 C 1.54877 * 109.33047 * 88.91459 * 25 16 15 27 27 C 1.47681 * 109.67791 * 290.10299 * 26 25 16 28 28 O 1.40524 * 109.40200 * 64.59699 * 13 12 11 29 29 H 1.09008 * 109.46926 * 59.99759 * 1 2 3 30 30 H 1.08994 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47162 * 300.00555 * 1 2 3 32 32 H 1.09002 * 109.47021 * 59.99629 * 3 2 1 33 33 H 1.09004 * 109.46961 * 300.00119 * 3 2 1 34 34 H 1.09003 * 109.46750 * 304.99697 * 4 3 2 35 35 H 1.08998 * 109.47225 * 185.00111 * 4 3 2 36 36 H 1.09005 * 109.47667 * 299.99817 * 8 6 5 37 37 H 1.08999 * 109.47288 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.47279 * 60.00465 * 8 6 5 39 39 H 0.96996 * 119.99277 * 0.02562 * 11 9 6 40 40 H 1.08998 * 109.47514 * 300.00555 * 12 11 9 41 41 H 1.09002 * 109.46960 * 60.00736 * 12 11 9 42 42 H 1.08994 * 109.23386 * 320.80391 * 15 13 12 43 43 H 1.08992 * 109.23017 * 80.22150 * 15 13 12 44 44 H 0.97004 * 119.99727 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.49488 * 208.87013 * 25 16 15 46 46 H 1.08998 * 109.49506 * 328.95576 * 25 16 15 47 47 H 1.08998 * 109.43245 * 50.17054 * 26 25 16 48 48 H 1.08998 * 109.43384 * 170.04083 * 26 25 16 49 49 H 1.09001 * 108.64270 * 181.88128 * 27 26 25 50 50 H 1.09003 * 108.64562 * 299.71876 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3812 0.4189 -1.3245 7 1 5.8781 1.2104 -0.7635 8 6 5.7830 -0.9417 -0.7518 9 6 5.7918 0.4957 -2.7725 10 8 4.9471 0.5795 -3.6387 11 7 7.0977 0.4712 -3.1048 12 6 7.4969 0.5452 -4.5124 13 6 9.0229 0.4981 -4.6129 14 1 9.4509 1.2906 -3.9992 15 6 9.4463 0.7024 -6.0825 16 7 10.8179 0.1892 -6.3083 17 6 11.0755 -0.5027 -7.4617 18 1 10.3538 -1.2126 -7.8380 19 6 12.2639 -0.2914 -8.1472 20 7 12.7353 -1.2223 -8.9493 21 14 13.1939 1.3142 -7.9312 22 1 14.2461 1.1415 -6.8976 23 1 13.8241 1.6983 -9.2198 24 1 12.2509 2.3789 -7.5045 25 6 11.8957 0.3852 -5.3666 26 6 11.9038 -0.7804 -4.3468 27 6 10.7268 -0.6745 -3.4611 28 8 9.4828 -0.7472 -4.1521 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8514 0.5681 0.8410 35 1 3.9786 2.1763 0.0889 36 1 5.4860 -0.9972 0.2955 37 1 6.8633 -1.0640 -0.8297 38 1 5.2861 -1.7332 -1.3129 39 1 7.7732 0.4038 -2.4120 40 1 7.0710 -0.2983 -5.0557 41 1 7.1326 1.4772 -4.9448 42 1 8.7524 0.1706 -6.7334 43 1 9.4178 1.7658 -6.3198 44 1 13.5655 -1.0745 -9.4287 45 1 12.8457 0.4079 -5.9006 46 1 11.7514 1.3284 -4.8398 47 1 11.8715 -1.7299 -4.8811 48 1 12.8135 -0.7324 -3.7484 49 1 10.7670 -1.4820 -2.7301 50 1 10.7752 0.2758 -2.9293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150417197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -167.388973 kcal Electronic energy + Delta-G solvation = -29240.974999 eV Core-core repulsion = 25075.835777 eV Total energy + Delta-G solvation = -4165.139222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.17530 -40.34877 -39.22727 -38.09486 -37.08061 -35.96597 -33.99624 -33.77177 -32.77471 -30.80228 -30.22497 -27.58292 -27.17131 -27.05083 -25.31048 -23.88741 -23.34373 -22.54469 -21.89104 -21.17636 -18.75840 -18.51792 -18.24683 -17.79397 -17.64978 -17.41697 -17.13027 -16.46268 -16.38402 -16.09631 -16.04217 -15.67788 -15.46912 -15.19503 -15.09403 -14.80029 -14.28772 -14.15366 -14.06842 -13.89900 -13.60869 -13.50748 -13.34729 -13.22392 -12.96152 -12.76549 -12.66292 -12.64537 -12.30830 -12.27620 -11.93577 -11.88270 -11.81128 -11.50387 -11.36338 -11.02001 -10.65889 -10.62885 -10.52221 -10.33726 -10.14495 -8.67914 -8.20669 -5.60173 1.29880 1.41381 1.52921 1.56512 1.82877 2.41638 2.84970 2.87288 2.91389 3.05082 3.31742 3.67001 3.92951 4.00743 4.01509 4.05643 4.12027 4.16382 4.18677 4.23869 4.34121 4.43870 4.45453 4.53700 4.55880 4.58739 4.58962 4.63152 4.68242 4.76234 4.77579 4.80957 4.85673 4.86691 5.01819 5.02698 5.13233 5.18457 5.22942 5.36457 5.49213 5.96941 6.08093 6.17834 6.26705 6.53941 6.56292 7.05321 7.22642 7.66445 8.01039 8.99489 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.002113 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.558450 B =13249.163971 C =13544.159692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.057 3.943 4 C 0.053 3.947 5 O -0.387 6.387 6 C 0.076 3.924 7 H 0.126 0.874 8 C -0.164 4.164 9 C 0.507 3.493 10 O -0.578 6.578 11 N -0.704 5.704 12 C 0.132 3.868 13 C 0.082 3.918 14 H 0.090 0.910 15 C 0.122 3.878 16 N -0.608 5.608 17 C -0.262 4.262 18 H 0.025 0.975 19 C -0.021 4.021 20 N -0.949 5.949 21 Si 0.949 3.051 22 H -0.269 1.269 23 H -0.309 1.309 24 H -0.258 1.258 25 C 0.134 3.866 26 C -0.172 4.172 27 C 0.072 3.928 28 O -0.377 6.377 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.417 0.583 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.263 0.737 45 H 0.032 0.968 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.874 9.075 27.549 32.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.020 4.020 4 C -0.022 4.022 5 O -0.306 6.306 6 C 0.015 3.985 7 H 0.143 0.857 8 C -0.222 4.222 9 C 0.294 3.706 10 O -0.456 6.456 11 N -0.357 5.357 12 C 0.007 3.993 13 C 0.022 3.978 14 H 0.108 0.892 15 C -0.004 4.004 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.043 0.957 19 C -0.217 4.217 20 N -0.592 5.592 21 Si 0.777 3.223 22 H -0.196 1.196 23 H -0.237 1.237 24 H -0.182 1.182 25 C 0.009 3.991 26 C -0.212 4.212 27 C -0.004 4.004 28 O -0.295 6.295 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.254 0.746 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.508 8.719 26.677 32.065 hybrid contribution 0.961 0.458 -0.706 1.277 sum -14.547 9.177 25.971 31.150 Atomic orbital electron populations 1.22890 0.79776 1.03575 1.00772 1.87913 1.21255 1.28766 1.95585 1.22745 0.92376 0.84996 1.01837 1.22925 0.93781 0.98811 0.86728 1.88102 1.20466 1.82315 1.39740 1.21991 0.83759 1.01154 0.91591 0.85706 1.22212 1.03085 0.94544 1.02368 1.21103 0.82266 0.75395 0.91835 1.90710 1.51994 1.50353 1.52569 1.45647 1.06951 1.74354 1.08782 1.21312 0.93007 1.02232 0.82702 1.22600 0.92558 0.87358 0.95330 0.89189 1.22035 0.85707 0.97133 0.95487 1.43878 1.06492 1.64396 1.18393 1.18605 1.03864 1.15365 1.01377 0.95747 1.26188 0.99167 1.00063 0.96275 1.70043 1.21801 1.34078 1.33318 0.85759 0.78541 0.82146 0.75857 1.19589 1.23731 1.18161 1.21262 0.90534 0.96541 0.90759 1.22100 0.99967 1.00128 0.99055 1.21537 0.82742 1.03265 0.92844 1.87468 1.37146 1.29945 1.74978 0.94085 0.89149 0.92190 0.88694 0.93378 0.90850 0.88989 0.89273 0.88937 0.93709 0.74627 0.93134 0.89619 0.93814 0.93734 0.92828 0.94992 0.91545 0.94701 0.89043 0.88557 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.32 10.67 -144.34 -1.54 -9.86 16 3 C 0.06 0.82 6.32 71.98 0.45 1.28 16 4 C 0.05 0.73 6.13 71.98 0.44 1.18 16 5 O -0.39 -8.97 9.49 -125.59 -1.19 -10.16 16 6 C 0.08 1.34 3.13 29.84 0.09 1.43 16 7 H 0.13 1.14 7.79 -2.39 -0.02 1.12 16 8 C -0.16 -2.40 9.48 71.98 0.68 -1.71 16 9 C 0.51 13.09 7.18 87.66 0.63 13.72 16 10 O -0.58 -21.45 16.51 15.95 0.26 -21.18 16 11 N -0.70 -15.03 5.45 -463.07 -2.52 -17.55 16 12 C 0.13 3.57 5.24 86.38 0.45 4.02 16 13 C 0.08 2.29 2.35 31.03 0.07 2.37 16 14 H 0.09 1.96 7.20 -2.39 -0.02 1.94 16 15 C 0.12 4.62 6.12 86.49 0.53 5.15 16 16 N -0.61 -28.02 2.11 -696.48 -1.47 -29.48 16 17 C -0.26 -15.14 9.67 84.03 0.81 -14.33 16 18 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 19 C -0.02 -1.20 5.20 84.86 0.44 -0.76 16 20 N -0.95 -60.07 13.97 21.65 0.30 -59.77 16 21 Si 0.95 45.61 25.27 68.60 1.73 47.34 16 22 H -0.27 -12.07 6.71 99.48 0.67 -11.40 16 23 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 C 0.13 5.29 4.47 87.40 0.39 5.68 16 26 C -0.17 -5.75 6.03 29.57 0.18 -5.57 16 27 C 0.07 1.83 6.04 70.32 0.42 2.26 16 28 O -0.38 -11.80 9.76 -144.91 -1.41 -13.22 16 29 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 0.79 7.87 -2.39 -0.02 0.77 16 35 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 36 H 0.09 0.95 7.87 -2.38 -0.02 0.93 16 37 H 0.09 0.97 7.92 -2.39 -0.02 0.95 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.42 5.97 8.24 -92.71 -0.76 5.21 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.84 7.75 -2.39 -0.02 1.82 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 45 H 0.03 1.42 3.66 -2.39 -0.01 1.41 16 46 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 47 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.08 1.37 7.27 -2.39 -0.02 1.35 16 Total: -1.00 -84.93 398.35 1.13 -83.81 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.11 Total: 13.78 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.85 Total: 16.30 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.69 Total: -106.81 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -3.88 Total: -54.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.73 Total: 47.34 kcal Total: -84.93 1.13 -83.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150417197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.581 kcal (2) G-P(sol) polarization free energy of solvation -84.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds