Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46695 * 2 1 4 4 C 1.42900 * 113.99546 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46996 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47376 * 65.00077 * 5 4 3 7 7 C 1.42901 * 114.00116 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47029 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99895 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99940 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47038 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47291 * 304.99933 * 12 11 10 14 14 C 1.54804 * 109.47268 * 185.00371 * 12 11 10 15 15 N 1.45121 * 109.54012 * 172.10726 * 14 12 11 16 16 C 1.36935 * 118.76046 * 269.29060 * 15 14 12 17 17 H 1.07998 * 120.00275 * 26.10336 * 16 15 14 18 18 C 1.38813 * 120.00032 * 206.09251 * 16 15 14 19 19 N 1.31621 * 119.99839 * 15.47235 * 18 16 15 20 20 Si 1.86796 * 120.00119 * 195.47017 * 18 16 15 21 21 H 1.48500 * 109.47088 * 60.00190 * 20 18 16 22 22 H 1.48504 * 109.47217 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47298 * 300.00499 * 20 18 16 24 24 C 1.47509 * 122.48133 * 89.29488 * 15 14 12 25 25 C 1.53576 * 111.02696 * 318.37297 * 24 15 14 26 26 C 1.51537 * 109.58161 * 320.02159 * 25 24 15 27 27 O 1.38015 * 109.47223 * 64.99620 * 12 11 10 28 28 H 1.09004 * 109.47317 * 299.99893 * 1 2 3 29 29 H 1.09004 * 109.47213 * 60.00116 * 1 2 3 30 30 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46894 * 240.00179 * 2 1 3 32 32 H 1.08996 * 109.47284 * 120.00130 * 2 1 3 33 33 H 1.08996 * 109.47138 * 300.00123 * 4 3 2 34 34 H 1.08999 * 109.47456 * 60.00486 * 4 3 2 35 35 H 1.09003 * 109.47201 * 185.00570 * 5 4 3 36 36 H 1.09002 * 109.46858 * 305.00175 * 5 4 3 37 37 H 1.08996 * 109.46883 * 299.99764 * 7 6 5 38 38 H 1.09001 * 109.47222 * 59.99838 * 7 6 5 39 39 H 0.96996 * 119.99921 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47053 * 299.99921 * 11 10 8 41 41 H 1.09005 * 109.46831 * 60.00067 * 11 10 8 42 42 H 1.08994 * 109.46232 * 292.13474 * 14 12 11 43 43 H 1.09006 * 109.45953 * 52.09048 * 14 12 11 44 44 H 0.96997 * 119.99805 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.16484 * 197.97516 * 24 15 14 46 46 H 1.09002 * 109.12819 * 78.74485 * 24 15 14 47 47 H 1.08997 * 109.45434 * 199.99260 * 25 24 15 48 48 H 1.08996 * 109.45431 * 80.05085 * 25 24 15 49 49 H 1.09004 * 109.59037 * 331.62030 * 26 25 24 50 50 H 1.08996 * 109.59314 * 211.18548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7193 4.9336 1.3244 8 6 3.2251 5.4670 2.6443 9 8 2.6540 4.7305 3.4204 10 7 3.4169 6.7627 2.9618 11 6 2.9359 7.2814 4.2447 12 6 3.2794 8.7682 4.3547 13 1 4.3502 8.9059 4.2042 14 6 2.8850 9.2865 5.7591 15 7 3.3768 10.6407 5.9325 16 6 4.6217 10.8256 6.4723 17 1 5.3721 10.0549 6.3755 18 6 4.9192 12.0036 7.1435 19 7 3.9485 12.8045 7.5292 20 14 6.6972 12.4523 7.4995 21 1 7.4436 12.5696 6.2210 22 1 6.7455 13.7488 8.2221 23 1 7.3161 11.3950 8.3387 24 6 2.5863 11.8257 5.5494 25 6 1.8769 11.6039 4.2055 26 6 2.8039 10.8713 3.2567 27 8 2.5853 9.4732 3.3924 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8339 0.9765 0.8891 34 1 3.8332 0.9769 -0.8908 35 1 4.9081 3.0256 -0.0900 36 1 3.3490 3.4419 -0.8412 37 1 4.7998 5.0624 1.2616 38 1 3.2406 5.4782 0.5106 39 1 3.8733 7.3518 2.3409 40 1 1.8553 7.1522 4.3067 41 1 3.4143 6.7371 5.0590 42 1 1.7995 9.2789 5.8574 43 1 3.3228 8.6409 6.5206 44 1 4.1564 13.6275 7.9986 45 1 3.2496 12.6867 5.4662 46 1 1.8405 12.0218 6.3197 47 1 1.6050 12.5677 3.7752 48 1 0.9766 11.0104 4.3639 49 1 3.8394 11.1048 3.5044 50 1 2.5934 11.1763 2.2317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150779578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -148.597142 kcal Electronic energy + Delta-G solvation = -28608.877798 eV Core-core repulsion = 24444.553451 eV Total energy + Delta-G solvation = -4164.324347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.80391 -38.92624 -38.47686 -37.26700 -35.24859 -34.57132 -32.28918 -32.08475 -31.50710 -30.01830 -28.87585 -27.26317 -25.54290 -24.99323 -23.07782 -22.88784 -22.66313 -20.88443 -20.38618 -19.54195 -17.46941 -17.33156 -17.19870 -16.94002 -16.32447 -16.11451 -15.93247 -15.54576 -15.25923 -15.01513 -14.66830 -14.52853 -14.13919 -13.74324 -13.61142 -13.43852 -13.10582 -12.95504 -12.68968 -12.58712 -12.40415 -12.09749 -12.03543 -11.77183 -11.57201 -11.40479 -11.25954 -11.21466 -10.97963 -10.86872 -10.67530 -10.26649 -9.96995 -9.90227 -9.88913 -9.77314 -9.74693 -9.67132 -8.91831 -8.82875 -8.44903 -6.77424 -5.85845 -3.30707 2.70150 2.78309 3.32745 3.34856 3.39111 3.39396 3.83946 4.15903 4.42531 4.60984 4.72992 4.78257 4.81699 4.91313 4.95125 5.01020 5.05062 5.07734 5.10602 5.18821 5.33537 5.34675 5.45505 5.53288 5.62050 5.62388 5.69807 5.84886 5.86684 5.98814 6.03104 6.16271 6.25664 6.34292 6.50913 6.58280 6.69340 6.73673 6.77907 6.82038 6.93670 7.33721 7.60144 7.62340 7.74486 8.19771 8.32589 8.37427 9.15170 9.79951 10.26166 11.21665 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.001941 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.451890 B =14419.889162 C =14894.268120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.044 3.956 8 C 0.510 3.490 9 O -0.524 6.524 10 N -0.719 5.719 11 C 0.134 3.866 12 C 0.067 3.933 13 H 0.052 0.948 14 C 0.127 3.873 15 N -0.591 5.591 16 C -0.266 4.266 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.177 3.823 25 C -0.177 4.177 26 C 0.088 3.912 27 O -0.396 6.396 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.402 0.598 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.255 0.745 45 H 0.075 0.925 46 H 0.027 0.973 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -17.571 -18.070 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.036 4.036 8 C 0.295 3.705 9 O -0.399 6.399 10 N -0.372 5.372 11 C 0.011 3.989 12 C 0.005 3.995 13 H 0.070 0.930 14 C -0.002 4.002 15 N -0.312 5.312 16 C -0.396 4.396 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.052 3.948 25 C -0.216 4.216 26 C 0.012 3.988 27 O -0.315 6.315 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.595 -17.949 -17.324 24.996 hybrid contribution 1.700 0.798 -0.089 1.880 sum 0.105 -17.151 -17.413 24.442 Atomic orbital electron populations 1.21741 0.93671 1.02126 1.03395 1.22456 0.95830 0.83832 0.99834 1.87995 1.20348 1.26221 1.95356 1.22481 0.82444 0.95355 1.00866 1.22589 0.98383 0.92893 0.87663 1.88091 1.80788 1.20829 1.37523 1.22205 1.00449 0.84417 0.96512 1.20165 0.80074 0.82273 0.87984 1.90732 1.40970 1.57141 1.51066 1.45866 1.60357 1.09758 1.21252 1.21432 1.00431 0.92386 0.84674 1.22628 0.95495 0.88649 0.92723 0.93034 1.21412 0.97455 0.88053 0.93274 1.43824 1.17165 0.99111 1.71127 1.19172 0.88351 1.02811 1.29256 0.91633 1.25049 0.97408 0.99186 0.97580 1.70060 1.30097 1.13656 1.40767 0.86371 0.84778 0.77629 0.77974 1.21037 1.21585 1.20811 1.20998 0.94058 0.89922 0.89809 1.22773 0.99791 0.99621 0.99420 1.22012 0.99926 0.79496 0.97359 1.86074 1.67751 1.21486 1.56203 0.91524 0.91934 0.91192 0.93671 0.93331 0.92257 0.91800 0.91568 0.92203 0.90401 0.90237 0.76363 0.90891 0.90160 0.93772 0.92581 0.93496 0.90640 0.95466 0.92118 0.92362 0.92057 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.23 10.31 -40.08 -0.41 -4.64 16 4 C 0.07 0.55 6.32 37.16 0.23 0.78 16 5 C 0.06 0.53 6.32 37.16 0.23 0.76 16 6 O -0.35 -4.56 9.84 -59.73 -0.59 -5.15 16 7 C 0.04 0.47 6.42 36.00 0.23 0.70 16 8 C 0.51 7.41 7.91 -10.99 -0.09 7.32 16 9 O -0.52 -10.07 16.50 -14.36 -0.24 -10.30 16 10 N -0.72 -9.57 5.49 -60.29 -0.33 -9.91 16 11 C 0.13 2.07 5.34 -4.04 -0.02 2.05 16 12 C 0.07 1.15 2.68 -25.78 -0.07 1.08 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.13 2.60 5.12 -3.83 -0.02 2.58 16 15 N -0.59 -14.13 2.23 -172.02 -0.38 -14.52 16 16 C -0.27 -6.99 9.46 -15.06 -0.14 -7.13 16 17 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 18 C 0.01 0.18 4.89 -17.43 -0.09 0.10 16 19 N -0.90 -25.45 11.00 55.49 0.61 -24.84 16 20 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.18 4.10 4.70 -3.19 -0.02 4.09 16 25 C -0.18 -3.28 5.79 -27.17 -0.16 -3.43 16 26 C 0.09 1.52 6.37 36.42 0.23 1.75 16 27 O -0.40 -6.86 9.38 -26.53 -0.25 -7.11 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 4.42 8.46 -40.82 -0.35 4.08 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.08 1.93 6.37 -51.93 -0.33 1.60 16 46 H 0.03 0.69 8.04 -51.93 -0.42 0.28 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 1.08 8.01 -51.93 -0.42 0.67 16 49 H 0.06 1.18 7.40 -51.93 -0.38 0.79 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -33.62 404.72 -8.60 -42.22 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -9.04 Total: 1.45 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 0.97 Total: 10.62 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.10 Total: -49.26 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.49 Total: -27.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.62 -8.60 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150779578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.382 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds