Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46695 * 2 1 4 4 C 1.42900 * 113.99546 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46996 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47376 * 65.00077 * 5 4 3 7 7 C 1.42901 * 114.00116 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47029 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99895 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99940 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47038 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47291 * 304.99933 * 12 11 10 14 14 C 1.54804 * 109.47268 * 185.00371 * 12 11 10 15 15 N 1.45121 * 109.54012 * 172.10726 * 14 12 11 16 16 C 1.36935 * 118.76046 * 269.29060 * 15 14 12 17 17 H 1.07998 * 120.00275 * 26.10336 * 16 15 14 18 18 C 1.38813 * 120.00032 * 206.09251 * 16 15 14 19 19 N 1.31621 * 119.99839 * 15.47235 * 18 16 15 20 20 Si 1.86796 * 120.00119 * 195.47017 * 18 16 15 21 21 H 1.48500 * 109.47088 * 60.00190 * 20 18 16 22 22 H 1.48504 * 109.47217 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47298 * 300.00499 * 20 18 16 24 24 C 1.47509 * 122.48133 * 89.29488 * 15 14 12 25 25 C 1.53576 * 111.02696 * 318.37297 * 24 15 14 26 26 C 1.51537 * 109.58161 * 320.02159 * 25 24 15 27 27 O 1.38015 * 109.47223 * 64.99620 * 12 11 10 28 28 H 1.09004 * 109.47317 * 299.99893 * 1 2 3 29 29 H 1.09004 * 109.47213 * 60.00116 * 1 2 3 30 30 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46894 * 240.00179 * 2 1 3 32 32 H 1.08996 * 109.47284 * 120.00130 * 2 1 3 33 33 H 1.08996 * 109.47138 * 300.00123 * 4 3 2 34 34 H 1.08999 * 109.47456 * 60.00486 * 4 3 2 35 35 H 1.09003 * 109.47201 * 185.00570 * 5 4 3 36 36 H 1.09002 * 109.46858 * 305.00175 * 5 4 3 37 37 H 1.08996 * 109.46883 * 299.99764 * 7 6 5 38 38 H 1.09001 * 109.47222 * 59.99838 * 7 6 5 39 39 H 0.96996 * 119.99921 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47053 * 299.99921 * 11 10 8 41 41 H 1.09005 * 109.46831 * 60.00067 * 11 10 8 42 42 H 1.08994 * 109.46232 * 292.13474 * 14 12 11 43 43 H 1.09006 * 109.45953 * 52.09048 * 14 12 11 44 44 H 0.96997 * 119.99805 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.16484 * 197.97516 * 24 15 14 46 46 H 1.09002 * 109.12819 * 78.74485 * 24 15 14 47 47 H 1.08997 * 109.45434 * 199.99260 * 25 24 15 48 48 H 1.08996 * 109.45431 * 80.05085 * 25 24 15 49 49 H 1.09004 * 109.59037 * 331.62030 * 26 25 24 50 50 H 1.08996 * 109.59314 * 211.18548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7193 4.9336 1.3244 8 6 3.2251 5.4670 2.6443 9 8 2.6540 4.7305 3.4204 10 7 3.4169 6.7627 2.9618 11 6 2.9359 7.2814 4.2447 12 6 3.2794 8.7682 4.3547 13 1 4.3502 8.9059 4.2042 14 6 2.8850 9.2865 5.7591 15 7 3.3768 10.6407 5.9325 16 6 4.6217 10.8256 6.4723 17 1 5.3721 10.0549 6.3755 18 6 4.9192 12.0036 7.1435 19 7 3.9485 12.8045 7.5292 20 14 6.6972 12.4523 7.4995 21 1 7.4436 12.5696 6.2210 22 1 6.7455 13.7488 8.2221 23 1 7.3161 11.3950 8.3387 24 6 2.5863 11.8257 5.5494 25 6 1.8769 11.6039 4.2055 26 6 2.8039 10.8713 3.2567 27 8 2.5853 9.4732 3.3924 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8339 0.9765 0.8891 34 1 3.8332 0.9769 -0.8908 35 1 4.9081 3.0256 -0.0900 36 1 3.3490 3.4419 -0.8412 37 1 4.7998 5.0624 1.2616 38 1 3.2406 5.4782 0.5106 39 1 3.8733 7.3518 2.3409 40 1 1.8553 7.1522 4.3067 41 1 3.4143 6.7371 5.0590 42 1 1.7995 9.2789 5.8574 43 1 3.3228 8.6409 6.5206 44 1 4.1564 13.6275 7.9986 45 1 3.2496 12.6867 5.4662 46 1 1.8405 12.0218 6.3197 47 1 1.6050 12.5677 3.7752 48 1 0.9766 11.0104 4.3639 49 1 3.8394 11.1048 3.5044 50 1 2.5934 11.1763 2.2317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150779578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = -172.044459 kcal Electronic energy + Delta-G solvation = -28609.894550 eV Core-core repulsion = 24444.553451 eV Total energy + Delta-G solvation = -4165.341099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.00615 -40.25749 -39.27824 -38.08159 -36.98469 -35.91063 -33.68587 -33.42626 -32.78219 -30.93079 -30.07863 -28.44521 -27.17005 -26.63516 -24.25249 -23.67447 -23.48435 -22.30486 -21.65152 -21.23301 -18.87465 -18.36749 -18.19208 -17.90772 -17.62553 -17.19177 -16.94057 -16.76627 -16.65160 -16.20085 -16.00038 -15.56088 -15.49452 -15.36195 -14.77893 -14.52536 -14.36630 -14.23637 -13.81564 -13.67174 -13.45752 -13.36293 -13.12209 -13.02895 -12.87114 -12.73751 -12.51622 -12.41239 -12.36591 -12.18573 -12.09512 -11.87956 -11.75810 -11.48380 -11.30839 -10.90392 -10.68101 -10.53536 -10.52912 -10.27110 -10.10855 -8.72536 -7.89123 -5.36555 1.46968 1.47751 1.54917 1.60502 1.83756 2.49430 2.76037 2.77865 3.01956 3.26251 3.56518 3.78017 4.06460 4.09921 4.14466 4.16286 4.22408 4.23284 4.27047 4.34136 4.36139 4.36625 4.48887 4.52284 4.54113 4.55664 4.59019 4.67664 4.75015 4.76181 4.84933 4.90552 4.91578 5.03276 5.14821 5.19390 5.25199 5.26113 5.39576 5.47140 5.61312 5.75384 6.07890 6.32875 6.35524 6.58793 6.75239 7.14211 7.25108 7.86348 8.27842 9.16464 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.001941 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.451890 B =14419.889162 C =14894.268120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.414 6.414 4 C 0.058 3.942 5 C 0.056 3.944 6 O -0.396 6.396 7 C 0.049 3.951 8 C 0.506 3.494 9 O -0.579 6.579 10 N -0.707 5.707 11 C 0.143 3.857 12 C 0.089 3.911 13 H 0.050 0.950 14 C 0.122 3.878 15 N -0.605 5.605 16 C -0.270 4.270 17 H 0.069 0.931 18 C -0.047 4.047 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.278 1.278 24 C 0.185 3.815 25 C -0.165 4.165 26 C 0.092 3.908 27 O -0.392 6.392 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.417 0.583 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.050 0.950 44 H 0.250 0.750 45 H 0.047 0.953 46 H -0.009 1.009 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.042 0.958 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -18.503 -20.963 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.019 4.019 5 C -0.020 4.020 6 O -0.315 6.315 7 C -0.030 4.030 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.361 5.361 11 C 0.019 3.981 12 C 0.027 3.973 13 H 0.067 0.933 14 C -0.006 4.006 15 N -0.327 5.327 16 C -0.400 4.400 17 H 0.087 0.913 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.204 1.204 24 C 0.060 3.940 25 C -0.204 4.204 26 C 0.016 3.984 27 O -0.311 6.311 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.254 0.746 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.010 0.990 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.281 -18.894 -20.270 27.712 hybrid contribution 1.251 1.037 0.820 1.820 sum 0.970 -17.857 -19.451 26.423 Atomic orbital electron populations 1.21774 0.93573 1.03255 1.02317 1.22628 0.96054 0.83045 1.00844 1.87952 1.21996 1.27856 1.95588 1.22714 0.81370 0.95846 1.01921 1.22867 1.00265 0.92545 0.86299 1.88042 1.81768 1.21914 1.39784 1.22291 1.02560 0.83872 0.94262 1.20985 0.78871 0.81812 0.88998 1.90709 1.43566 1.58467 1.53117 1.45706 1.59879 1.09933 1.20567 1.21162 0.99872 0.91101 0.85983 1.22260 0.95203 0.89447 0.90406 0.93257 1.21573 0.97174 0.86543 0.95345 1.44023 1.16798 1.00424 1.71443 1.19484 0.89348 1.02732 1.28433 0.91347 1.25789 1.00947 0.99428 0.98063 1.70229 1.31846 1.13908 1.42063 0.85369 0.80467 0.76840 0.77915 1.20054 1.22258 1.20360 1.20778 0.92673 0.89006 0.91500 1.22633 0.99397 1.01323 0.97065 1.22082 0.98296 0.79069 0.98969 1.86103 1.67680 1.21657 1.55649 0.93475 0.92059 0.89000 0.91475 0.93392 0.93100 0.88703 0.88514 0.91337 0.86818 0.87585 0.74629 0.91898 0.90439 0.94074 0.93127 0.94134 0.93430 0.99040 0.89679 0.92265 0.93993 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.41 -8.91 10.31 -144.34 -1.49 -10.40 16 4 C 0.06 0.88 6.32 71.98 0.45 1.33 16 5 C 0.06 0.82 6.32 71.98 0.45 1.27 16 6 O -0.40 -9.56 9.84 -125.56 -1.24 -10.79 16 7 C 0.05 0.90 6.42 71.23 0.46 1.36 16 8 C 0.51 13.99 7.91 87.66 0.69 14.68 16 9 O -0.58 -22.39 16.50 16.00 0.26 -22.12 16 10 N -0.71 -17.45 5.49 -463.06 -2.54 -19.99 16 11 C 0.14 4.30 5.34 86.38 0.46 4.76 16 12 C 0.09 2.94 2.68 31.21 0.08 3.03 16 13 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 14 C 0.12 4.98 5.12 87.25 0.45 5.43 16 15 N -0.60 -29.30 2.23 -698.15 -1.55 -30.85 16 16 C -0.27 -14.28 9.46 84.03 0.80 -13.48 16 17 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 18 C -0.05 -2.54 4.89 84.86 0.41 -2.12 16 19 N -0.93 -54.30 11.00 21.65 0.24 -54.06 16 20 Si 0.97 43.74 29.58 68.60 2.03 45.77 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.19 8.77 4.70 86.38 0.41 9.18 16 25 C -0.17 -5.91 5.79 30.31 0.18 -5.73 16 26 C 0.09 2.93 6.37 71.50 0.46 3.39 16 27 O -0.39 -12.67 9.38 -117.86 -1.11 -13.78 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.42 7.89 8.46 -92.71 -0.78 7.10 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 43 H 0.05 2.10 7.98 -2.38 -0.02 2.08 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.05 2.50 6.37 -2.39 -0.02 2.48 16 46 H -0.01 -0.46 8.04 -2.39 -0.02 -0.48 16 47 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 49 H 0.04 1.53 7.40 -2.39 -0.02 1.51 16 50 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -75.89 404.72 1.25 -74.64 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.12 Total: 18.69 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.52 Total: 22.90 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.86 Total: -104.90 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -3.57 Total: -57.10 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.89 1.25 -74.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150779578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.405 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds