Wall clock time and date at job start Tue Mar 31 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46857 * 2 1 4 4 C 1.42901 * 113.99837 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47280 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47119 * 64.99876 * 5 4 3 7 7 C 1.42889 * 114.00209 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47499 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99850 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00568 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00104 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47008 * 179.97438 * 11 10 8 13 13 H 1.08999 * 108.56758 * 59.99872 * 12 11 10 14 14 C 1.46915 * 108.51212 * 177.87890 * 12 11 10 15 15 N 1.50110 * 106.78140 * 177.83989 * 14 12 11 16 16 C 1.36943 * 120.63572 * 111.32450 * 15 14 12 17 17 H 1.08004 * 119.99826 * 155.71955 * 16 15 14 18 18 C 1.38807 * 119.99962 * 335.71942 * 16 15 14 19 19 N 1.31622 * 119.99912 * 340.61126 * 18 16 15 20 20 Si 1.86804 * 120.00000 * 160.61376 * 18 16 15 21 21 H 1.48495 * 109.47099 * 89.99929 * 20 18 16 22 22 H 1.48499 * 109.46788 * 209.99801 * 20 18 16 23 23 H 1.48501 * 109.46733 * 329.99680 * 20 18 16 24 24 C 1.43426 * 118.73094 * 291.34938 * 15 14 12 25 25 C 1.55329 * 116.23976 * 89.35205 * 24 15 14 26 26 C 1.55185 * 108.87129 * 319.46830 * 25 24 15 27 27 O 1.39645 * 110.57276 * 322.14255 * 26 25 24 28 28 H 1.09000 * 109.46691 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47136 * 299.99836 * 1 2 3 30 30 H 1.08995 * 109.47358 * 60.00023 * 1 2 3 31 31 H 1.08997 * 109.47136 * 240.00164 * 2 1 3 32 32 H 1.08995 * 109.47358 * 119.99977 * 2 1 3 33 33 H 1.09004 * 109.47101 * 60.00004 * 4 3 2 34 34 H 1.08998 * 109.47429 * 299.99908 * 4 3 2 35 35 H 1.08999 * 109.47019 * 305.00165 * 5 4 3 36 36 H 1.08997 * 109.47487 * 185.00159 * 5 4 3 37 37 H 1.08999 * 109.47161 * 60.00103 * 7 6 5 38 38 H 1.09000 * 109.47412 * 300.00311 * 7 6 5 39 39 H 0.97004 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.08999 * 109.47390 * 59.99378 * 11 10 8 41 41 H 1.09006 * 109.46804 * 299.99308 * 11 10 8 42 42 H 1.09000 * 109.99638 * 297.16152 * 14 12 11 43 43 H 1.09005 * 109.98759 * 58.52204 * 14 12 11 44 44 H 0.96996 * 119.99733 * 180.02562 * 19 18 16 45 45 H 1.09002 * 108.12683 * 327.59223 * 24 15 14 46 46 H 1.09005 * 107.96622 * 210.98516 * 24 15 14 47 47 H 1.09000 * 109.56798 * 199.65328 * 25 24 15 48 48 H 1.09002 * 109.57056 * 79.28519 * 25 24 15 49 49 H 1.09003 * 109.25712 * 201.86436 * 26 25 24 50 50 H 1.08998 * 109.25851 * 82.42307 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 -0.0001 6 8 3.3975 3.5462 1.2203 7 6 3.7181 4.9350 1.3217 8 6 3.2238 5.4698 2.6411 9 8 2.6526 4.7340 3.4179 10 7 3.4154 6.7658 2.9574 11 6 2.9353 7.2854 4.2402 12 6 3.2785 8.7725 4.3487 13 1 2.7931 9.3015 3.5286 14 6 2.7437 9.2833 5.6181 15 7 3.1473 10.7262 5.7092 16 6 2.2092 11.7200 5.6220 17 1 2.4046 12.6871 6.0614 18 6 1.0072 11.4845 4.9688 19 7 0.9043 10.4833 4.1207 20 14 -0.4642 12.5887 5.2934 21 1 -0.4521 13.7237 4.3360 22 1 -1.7159 11.8087 5.1207 23 1 -0.3941 13.1113 6.6817 24 6 4.5343 11.0441 5.8887 25 6 5.3717 11.2207 4.5925 26 6 4.9476 10.1341 3.5689 27 8 4.6879 8.9245 4.2167 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8340 0.9765 -0.8892 34 1 3.8333 0.9768 0.8908 35 1 3.3499 3.4410 -0.8424 36 1 4.9082 3.0255 -0.0893 37 1 3.2401 5.4787 0.5069 38 1 4.7987 5.0639 1.2598 39 1 3.8719 7.3543 2.3359 40 1 3.4143 6.7419 5.0546 41 1 1.8548 7.1561 4.3031 42 1 1.6569 9.1991 5.6255 43 1 3.1673 8.7244 6.4527 44 1 0.0645 10.3189 3.6640 45 1 4.9900 10.2510 6.4815 46 1 4.5957 11.9699 6.4609 47 1 6.4310 11.1103 4.8243 48 1 5.1893 12.2096 4.1718 49 1 5.7497 9.9893 2.8452 50 1 4.0486 10.4628 3.0474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150779579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:49 Heat of formation + Delta-G solvation = -141.560504 kcal Electronic energy + Delta-G solvation = -29147.736161 eV Core-core repulsion = 24983.716946 eV Total energy + Delta-G solvation = -4164.019215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.67218 -38.90139 -38.37616 -37.14205 -35.01435 -34.44067 -32.24923 -32.06551 -31.22061 -29.85031 -28.78636 -27.42841 -25.35596 -24.91399 -23.01051 -22.79152 -22.50708 -20.79527 -20.14634 -19.59314 -17.37036 -17.28605 -17.09975 -16.83189 -16.13304 -16.02580 -15.80457 -15.24967 -14.94261 -14.83261 -14.56387 -14.24735 -14.07247 -13.84004 -13.55651 -13.24027 -13.02227 -12.88237 -12.58286 -12.45049 -12.36617 -12.03450 -11.91068 -11.68535 -11.49342 -11.40831 -11.21589 -11.17221 -10.84501 -10.73598 -10.49918 -10.16832 -9.97019 -9.86424 -9.81214 -9.69890 -9.54680 -9.46983 -8.80917 -8.65063 -8.50405 -6.82307 -5.92580 -3.30946 2.90113 2.96196 3.32860 3.41617 3.42432 3.43982 4.01341 4.43586 4.67587 4.71505 4.80499 4.88934 4.92768 5.02209 5.09312 5.09854 5.13583 5.16661 5.20611 5.24213 5.28147 5.42338 5.52632 5.69045 5.71486 5.80930 5.91472 5.91858 6.01754 6.14174 6.32675 6.41636 6.47868 6.57170 6.66039 6.70126 6.80341 6.85403 6.93942 6.96307 7.03358 7.11696 7.32841 7.71627 7.83972 8.12638 8.31955 8.53600 9.06728 9.75001 10.29225 11.16576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002350 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.912777 B =11911.932573 C =13164.342485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.354 6.354 7 C 0.044 3.956 8 C 0.509 3.491 9 O -0.527 6.527 10 N -0.713 5.713 11 C 0.123 3.877 12 C 0.061 3.939 13 H 0.107 0.893 14 C 0.143 3.857 15 N -0.587 5.587 16 C -0.249 4.249 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.067 3.933 27 O -0.370 6.370 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.020 0.980 44 H 0.256 0.744 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 -14.518 -10.826 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.272 6.272 7 C -0.036 4.036 8 C 0.294 3.706 9 O -0.403 6.403 10 N -0.366 5.366 11 C -0.001 4.001 12 C 0.002 3.998 13 H 0.125 0.875 14 C 0.018 3.982 15 N -0.308 5.308 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.553 5.553 20 Si 0.734 3.266 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.011 4.011 27 O -0.288 6.288 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.478 -15.173 -10.081 19.334 hybrid contribution -0.270 1.046 -0.684 1.279 sum 6.208 -14.127 -10.765 18.815 Atomic orbital electron populations 1.21739 0.93691 1.02082 1.03439 1.22452 0.95825 0.83879 0.99778 1.88004 1.20359 1.26158 1.95341 1.22480 0.82428 0.95409 1.00786 1.22579 0.98319 0.92847 0.87817 1.88089 1.80732 1.20908 1.37466 1.22216 1.00379 0.84263 0.96718 1.20131 0.80180 0.82419 0.87909 1.90718 1.41231 1.57212 1.51120 1.45801 1.59914 1.09628 1.21228 1.21710 0.99653 0.94601 0.84090 1.22203 0.80880 0.92789 1.03913 0.87509 1.20753 1.01660 0.83370 0.92446 1.44115 1.00851 1.01526 1.84278 1.19245 0.95691 0.94125 1.28753 0.91337 1.24900 0.99623 0.98530 0.96543 1.69859 1.25581 1.32373 1.27452 0.86277 0.82489 0.79781 0.78099 1.21567 1.21504 1.20590 1.20380 0.85181 0.97859 0.93422 1.23583 0.99001 0.98463 1.00290 1.22344 0.99875 0.85155 0.93699 1.87512 1.23817 1.37869 1.79629 0.91227 0.91504 0.91922 0.93710 0.93362 0.91871 0.92288 0.92239 0.91632 0.90335 0.90496 0.76632 0.91979 0.90307 0.87782 0.96210 0.93439 0.95002 0.94903 0.93203 0.92509 0.93137 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.52 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.62 10.31 -40.08 -0.41 -5.03 16 4 C 0.07 0.62 6.32 37.16 0.23 0.85 16 5 C 0.06 0.60 6.32 37.16 0.23 0.83 16 6 O -0.35 -5.08 9.84 -59.73 -0.59 -5.66 16 7 C 0.04 0.55 6.42 36.01 0.23 0.78 16 8 C 0.51 8.54 7.91 -10.98 -0.09 8.45 16 9 O -0.53 -11.26 16.50 -14.36 -0.24 -11.49 16 10 N -0.71 -11.44 5.41 -60.29 -0.33 -11.76 16 11 C 0.12 2.30 5.24 -4.04 -0.02 2.28 16 12 C 0.06 1.23 1.98 -29.65 -0.06 1.17 16 13 H 0.11 2.41 5.24 -51.93 -0.27 2.14 16 14 C 0.14 3.22 4.70 -4.94 -0.02 3.20 16 15 N -0.59 -13.99 2.61 -174.50 -0.46 -14.44 16 16 C -0.25 -6.45 9.61 -15.06 -0.14 -6.59 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.91 -23.61 9.57 55.49 0.53 -23.08 16 20 Si 0.90 20.86 29.60 -169.99 -5.03 15.82 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.16 3.36 5.33 -4.43 -0.02 3.34 16 25 C -0.17 -3.16 6.75 -24.34 -0.16 -3.33 16 26 C 0.07 1.22 6.38 38.31 0.24 1.47 16 27 O -0.37 -7.09 9.44 -31.95 -0.30 -7.39 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 5.52 8.26 -40.82 -0.34 5.18 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 42 H 0.10 2.59 6.03 -51.93 -0.31 2.27 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 46 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -31.72 400.15 -8.66 -40.38 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.83 Total: 4.35 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 0.97 Total: 12.28 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.25 Total: -49.29 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.54 Total: -29.58 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.72 -8.66 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150779579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.179 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds