Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46857 * 2 1 4 4 C 1.42901 * 113.99837 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47280 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47119 * 64.99876 * 5 4 3 7 7 C 1.42889 * 114.00209 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47499 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99850 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00568 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00104 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47008 * 179.97438 * 11 10 8 13 13 H 1.08999 * 108.56758 * 59.99872 * 12 11 10 14 14 C 1.46915 * 108.51212 * 177.87890 * 12 11 10 15 15 N 1.50110 * 106.78140 * 177.83989 * 14 12 11 16 16 C 1.36943 * 120.63572 * 111.32450 * 15 14 12 17 17 H 1.08004 * 119.99826 * 155.71955 * 16 15 14 18 18 C 1.38807 * 119.99962 * 335.71942 * 16 15 14 19 19 N 1.31622 * 119.99912 * 340.61126 * 18 16 15 20 20 Si 1.86804 * 120.00000 * 160.61376 * 18 16 15 21 21 H 1.48495 * 109.47099 * 89.99929 * 20 18 16 22 22 H 1.48499 * 109.46788 * 209.99801 * 20 18 16 23 23 H 1.48501 * 109.46733 * 329.99680 * 20 18 16 24 24 C 1.43426 * 118.73094 * 291.34938 * 15 14 12 25 25 C 1.55329 * 116.23976 * 89.35205 * 24 15 14 26 26 C 1.55185 * 108.87129 * 319.46830 * 25 24 15 27 27 O 1.39645 * 110.57276 * 322.14255 * 26 25 24 28 28 H 1.09000 * 109.46691 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47136 * 299.99836 * 1 2 3 30 30 H 1.08995 * 109.47358 * 60.00023 * 1 2 3 31 31 H 1.08997 * 109.47136 * 240.00164 * 2 1 3 32 32 H 1.08995 * 109.47358 * 119.99977 * 2 1 3 33 33 H 1.09004 * 109.47101 * 60.00004 * 4 3 2 34 34 H 1.08998 * 109.47429 * 299.99908 * 4 3 2 35 35 H 1.08999 * 109.47019 * 305.00165 * 5 4 3 36 36 H 1.08997 * 109.47487 * 185.00159 * 5 4 3 37 37 H 1.08999 * 109.47161 * 60.00103 * 7 6 5 38 38 H 1.09000 * 109.47412 * 300.00311 * 7 6 5 39 39 H 0.97004 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.08999 * 109.47390 * 59.99378 * 11 10 8 41 41 H 1.09006 * 109.46804 * 299.99308 * 11 10 8 42 42 H 1.09000 * 109.99638 * 297.16152 * 14 12 11 43 43 H 1.09005 * 109.98759 * 58.52204 * 14 12 11 44 44 H 0.96996 * 119.99733 * 180.02562 * 19 18 16 45 45 H 1.09002 * 108.12683 * 327.59223 * 24 15 14 46 46 H 1.09005 * 107.96622 * 210.98516 * 24 15 14 47 47 H 1.09000 * 109.56798 * 199.65328 * 25 24 15 48 48 H 1.09002 * 109.57056 * 79.28519 * 25 24 15 49 49 H 1.09003 * 109.25712 * 201.86436 * 26 25 24 50 50 H 1.08998 * 109.25851 * 82.42307 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 -0.0001 6 8 3.3975 3.5462 1.2203 7 6 3.7181 4.9350 1.3217 8 6 3.2238 5.4698 2.6411 9 8 2.6526 4.7340 3.4179 10 7 3.4154 6.7658 2.9574 11 6 2.9353 7.2854 4.2402 12 6 3.2785 8.7725 4.3487 13 1 2.7931 9.3015 3.5286 14 6 2.7437 9.2833 5.6181 15 7 3.1473 10.7262 5.7092 16 6 2.2092 11.7200 5.6220 17 1 2.4046 12.6871 6.0614 18 6 1.0072 11.4845 4.9688 19 7 0.9043 10.4833 4.1207 20 14 -0.4642 12.5887 5.2934 21 1 -0.4521 13.7237 4.3360 22 1 -1.7159 11.8087 5.1207 23 1 -0.3941 13.1113 6.6817 24 6 4.5343 11.0441 5.8887 25 6 5.3717 11.2207 4.5925 26 6 4.9476 10.1341 3.5689 27 8 4.6879 8.9245 4.2167 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8340 0.9765 -0.8892 34 1 3.8333 0.9768 0.8908 35 1 3.3499 3.4410 -0.8424 36 1 4.9082 3.0255 -0.0893 37 1 3.2401 5.4787 0.5069 38 1 4.7987 5.0639 1.2598 39 1 3.8719 7.3543 2.3359 40 1 3.4143 6.7419 5.0546 41 1 1.8548 7.1561 4.3031 42 1 1.6569 9.1991 5.6255 43 1 3.1673 8.7244 6.4527 44 1 0.0645 10.3189 3.6640 45 1 4.9900 10.2510 6.4815 46 1 4.5957 11.9699 6.4609 47 1 6.4310 11.1103 4.8243 48 1 5.1893 12.2096 4.1718 49 1 5.7497 9.9893 2.8452 50 1 4.0486 10.4628 3.0474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150779579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -163.291947 kcal Electronic energy + Delta-G solvation = -29148.678507 eV Core-core repulsion = 24983.716946 eV Total energy + Delta-G solvation = -4164.961561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.08720 -40.30263 -39.27903 -38.08153 -36.78790 -35.93387 -33.86522 -33.05418 -32.74640 -30.83446 -30.19138 -28.65044 -27.05604 -26.49342 -24.17790 -23.68312 -23.48991 -22.40346 -21.52810 -21.26538 -18.97023 -18.33503 -18.11864 -17.93481 -17.64376 -17.07185 -16.86764 -16.64561 -16.30784 -16.26339 -15.93058 -15.57118 -15.52373 -15.25008 -14.82566 -14.52881 -14.28981 -14.18474 -13.92720 -13.59248 -13.50096 -13.36622 -13.28029 -12.99784 -12.85815 -12.60916 -12.50447 -12.38307 -12.31055 -12.19358 -11.92012 -11.88788 -11.76142 -11.37087 -11.18340 -10.90019 -10.69044 -10.55083 -10.53871 -10.26313 -10.08267 -8.71076 -7.89329 -5.29476 1.46992 1.51930 1.58912 1.60795 1.86395 2.52374 2.77495 3.01941 3.12821 3.28270 3.51522 3.78041 4.08136 4.15487 4.17125 4.21641 4.25139 4.28640 4.32240 4.35373 4.39047 4.42921 4.47994 4.51735 4.54811 4.57708 4.73881 4.75785 4.78698 4.81330 4.89420 4.97470 5.02271 5.08736 5.19630 5.20572 5.25098 5.35680 5.39824 5.43546 5.51472 5.68814 6.07376 6.32904 6.36902 6.52636 6.60034 7.11163 7.25455 7.83798 8.36676 9.16576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002350 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.912777 B =11911.932573 C =13164.342485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.058 3.942 5 C 0.055 3.945 6 O -0.395 6.395 7 C 0.052 3.948 8 C 0.504 3.496 9 O -0.582 6.582 10 N -0.703 5.703 11 C 0.135 3.865 12 C 0.082 3.918 13 H 0.086 0.914 14 C 0.143 3.857 15 N -0.601 5.601 16 C -0.262 4.262 17 H 0.063 0.937 18 C -0.037 4.037 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.279 1.279 24 C 0.153 3.847 25 C -0.165 4.165 26 C 0.067 3.933 27 O -0.366 6.366 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.414 0.586 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.024 0.976 44 H 0.251 0.749 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.094 -14.833 -12.613 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.018 4.018 5 C -0.021 4.021 6 O -0.314 6.314 7 C -0.028 4.028 8 C 0.291 3.709 9 O -0.461 6.461 10 N -0.356 5.356 11 C 0.009 3.991 12 C 0.023 3.977 13 H 0.104 0.896 14 C 0.018 3.982 15 N -0.322 5.322 16 C -0.392 4.392 17 H 0.081 0.919 18 C -0.234 4.234 19 N -0.563 5.563 20 Si 0.788 3.212 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.205 1.205 24 C 0.025 3.975 25 C -0.206 4.206 26 C -0.010 4.010 27 O -0.284 6.284 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.250 0.750 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.072 0.928 49 H 0.108 0.892 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.462 -15.465 -11.896 21.268 hybrid contribution -0.825 1.140 -0.098 1.410 sum 7.637 -14.326 -11.994 20.184 Atomic orbital electron populations 1.21776 0.93668 1.03267 1.02256 1.22630 0.95991 0.83026 1.00900 1.87960 1.22056 1.27916 1.95592 1.22715 0.81342 0.95724 1.01987 1.22887 1.00314 0.92611 0.86275 1.88041 1.81751 1.21744 1.39909 1.22260 1.02542 0.83902 0.94050 1.21049 0.78932 0.81814 0.89124 1.90691 1.43714 1.58477 1.53222 1.45661 1.59557 1.09980 1.20398 1.21355 0.98434 0.93741 0.85524 1.21725 0.81319 0.93023 1.01648 0.89592 1.20674 1.00230 0.83355 0.93903 1.44221 1.01841 1.01450 1.84728 1.19385 0.96689 0.94436 1.28698 0.91904 1.25473 1.01329 0.99875 0.96690 1.69986 1.25396 1.33186 1.27699 0.85424 0.79733 0.78287 0.77771 1.21386 1.22108 1.20487 1.20507 0.84179 0.97797 0.94990 1.23496 1.00023 0.98443 0.98636 1.22418 0.99991 0.84592 0.94031 1.87512 1.22673 1.38383 1.79849 0.88895 0.93605 0.92113 0.91363 0.93330 0.88566 0.93017 0.91459 0.88384 0.87796 0.86694 0.75014 0.92534 0.92352 0.90460 0.95838 0.94010 0.94732 0.95144 0.90289 0.92752 0.89228 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.05 0.87 6.66 71.98 0.48 1.35 16 3 O -0.41 -9.87 10.31 -144.34 -1.49 -11.36 16 4 C 0.06 1.01 6.32 71.98 0.45 1.46 16 5 C 0.05 0.94 6.32 71.98 0.45 1.39 16 6 O -0.40 -10.82 9.84 -125.56 -1.24 -12.06 16 7 C 0.05 1.16 6.42 71.24 0.46 1.61 16 8 C 0.50 16.61 7.91 87.66 0.69 17.31 16 9 O -0.58 -25.44 16.50 15.98 0.26 -25.18 16 10 N -0.70 -22.04 5.41 -463.06 -2.51 -24.54 16 11 C 0.13 5.11 5.24 86.38 0.45 5.56 16 12 C 0.08 3.31 1.98 28.71 0.06 3.37 16 13 H 0.09 3.92 5.24 -2.39 -0.01 3.91 16 14 C 0.14 6.60 4.70 83.79 0.39 6.99 16 15 N -0.60 -28.79 2.61 -706.00 -1.84 -30.63 16 16 C -0.26 -13.71 9.61 84.03 0.81 -12.91 16 17 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 18 C -0.04 -1.95 4.92 84.86 0.42 -1.54 16 19 N -0.92 -48.62 9.57 21.65 0.21 -48.41 16 20 Si 0.96 43.34 29.60 68.60 2.03 45.37 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.15 6.28 5.33 87.75 0.47 6.75 16 25 C -0.17 -5.69 6.75 32.14 0.22 -5.47 16 26 C 0.07 2.30 6.38 72.73 0.46 2.76 16 27 O -0.37 -13.42 9.44 -137.24 -1.30 -14.71 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.41 10.66 8.26 -92.71 -0.77 9.89 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 43 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 45 H 0.03 1.38 7.99 -2.39 -0.02 1.36 16 46 H 0.03 1.24 7.95 -2.38 -0.02 1.22 16 47 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -70.75 400.15 0.84 -69.92 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.15 Total: 24.73 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 6.56 Total: 26.88 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -4.14 Total: -103.59 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -3.76 Total: -63.31 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.75 0.84 -69.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150779579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.376 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds