Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99537 * 2 1 4 4 C 1.53006 * 109.46884 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46883 * 65.00365 * 4 3 2 6 6 C 1.42901 * 114.00108 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.46789 * 29.99713 * 6 5 4 8 8 C 1.52999 * 109.46800 * 269.99774 * 6 5 4 9 9 C 1.50695 * 109.47485 * 149.99508 * 6 5 4 10 10 O 1.21284 * 119.99825 * 19.04185 * 9 6 5 11 11 N 1.34778 * 120.00202 * 199.04071 * 9 6 5 12 12 C 1.47504 * 118.75457 * 354.29692 * 11 9 6 13 13 C 1.53576 * 111.02877 * 221.60565 * 12 11 9 14 14 C 1.51533 * 109.58310 * 39.98038 * 13 12 11 15 15 O 1.42153 * 108.75270 * 268.60035 * 14 13 12 16 16 C 1.37988 * 119.43186 * 87.23621 * 15 14 13 17 17 H 1.08995 * 109.47724 * 56.56552 * 16 15 14 18 18 C 1.52995 * 109.44867 * 176.55767 * 16 15 14 19 19 N 1.46497 * 109.47308 * 300.00913 * 18 16 15 20 20 C 1.36934 * 120.00405 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00144 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99908 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00147 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47002 * 90.00062 * 24 22 20 26 26 H 1.48491 * 109.47338 * 209.99849 * 24 22 20 27 27 H 1.48502 * 109.47017 * 330.00401 * 24 22 20 28 28 C 1.45124 * 118.75640 * 174.27894 * 11 9 6 29 29 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47184 * 299.99718 * 1 2 3 31 31 H 1.08994 * 109.47313 * 59.99767 * 1 2 3 32 32 H 1.09001 * 109.47271 * 60.00144 * 3 2 1 33 33 H 1.08998 * 109.47505 * 300.00029 * 3 2 1 34 34 H 1.08998 * 109.47069 * 305.00373 * 4 3 2 35 35 H 1.08999 * 109.47130 * 184.99580 * 4 3 2 36 36 H 1.09001 * 109.46860 * 186.73939 * 8 6 5 37 37 H 1.08995 * 109.47035 * 306.74001 * 8 6 5 38 38 H 1.09000 * 109.47193 * 66.74114 * 8 6 5 39 39 H 1.08997 * 109.17072 * 342.00322 * 12 11 9 40 40 H 1.08996 * 109.16444 * 101.20971 * 12 11 9 41 41 H 1.08999 * 109.45347 * 160.01062 * 13 12 11 42 42 H 1.09005 * 109.45287 * 279.96913 * 13 12 11 43 43 H 1.08997 * 109.59206 * 28.37734 * 14 13 12 44 44 H 1.09000 * 109.59373 * 148.67451 * 14 13 12 45 45 H 1.09004 * 109.47615 * 60.01058 * 18 16 15 46 46 H 1.09005 * 109.46990 * 180.02562 * 18 16 15 47 47 H 0.97003 * 120.00123 * 0.02562 * 19 18 16 48 48 H 0.97002 * 119.99774 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.45894 * 210.76627 * 28 11 9 50 50 H 1.09000 * 109.45954 * 330.73778 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3811 0.4193 -1.3247 7 1 5.8042 0.2822 -0.3296 8 6 5.9900 1.6655 -1.9706 9 6 5.6897 -0.7876 -2.1726 10 8 4.8441 -1.2389 -2.9157 11 7 6.9054 -1.3656 -2.1050 12 6 7.9530 -0.7216 -1.2904 13 6 9.3103 -0.7600 -2.0078 14 6 9.1117 -0.4891 -3.4855 15 8 8.9301 -1.7288 -4.1570 16 6 7.6639 -2.2689 -4.2530 17 1 6.9981 -1.5512 -4.7321 18 6 7.7185 -3.5500 -5.0875 19 7 8.2199 -3.2384 -6.4283 20 6 8.3551 -4.2351 -7.3575 21 1 8.0917 -5.2509 -7.1021 22 6 8.8308 -3.9399 -8.6278 23 7 8.9612 -4.8980 -9.5207 24 14 9.2857 -2.1830 -9.0698 25 1 10.7164 -1.9466 -8.7497 26 1 9.0605 -1.9635 -10.5211 27 1 8.4420 -1.2420 -8.2900 28 6 7.1340 -2.5982 -2.8361 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1766 0.0888 36 1 7.0502 1.4961 -2.1584 37 1 5.4823 1.8712 -2.9129 38 1 5.8712 2.5170 -1.3005 39 1 7.6752 0.3160 -1.1054 40 1 8.0370 -1.2441 -0.3375 41 1 9.9663 0.0006 -1.5844 42 1 9.7625 -1.7431 -1.8769 43 1 8.2299 0.1358 -3.6272 44 1 9.9886 0.0203 -3.8849 45 1 8.3843 -4.2678 -4.6084 46 1 6.7183 -3.9767 -5.1640 47 1 8.4562 -2.3261 -6.6579 48 1 9.2932 -4.6917 -10.4085 49 1 7.8684 -3.2042 -2.3055 50 1 6.1981 -3.1509 -2.9179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201557079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = -136.354680 kcal Electronic energy + Delta-G solvation = -29967.183381 eV Core-core repulsion = 25803.389907 eV Total energy + Delta-G solvation = -4163.793474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86697 -39.12602 -38.32551 -37.31652 -35.81283 -34.70999 -33.00296 -32.29996 -31.11315 -30.13300 -29.03994 -26.86231 -26.62836 -25.64348 -24.11877 -22.91548 -22.18888 -21.69519 -21.00162 -19.39459 -17.86814 -17.59775 -17.42357 -17.00166 -16.59735 -16.29496 -15.85645 -15.72029 -15.62612 -15.21363 -14.99506 -14.54612 -14.29888 -13.96328 -13.75615 -13.47590 -13.32002 -13.17006 -12.87229 -12.77616 -12.59636 -12.49320 -12.39433 -12.11882 -12.04476 -11.81326 -11.60146 -11.43186 -11.38877 -11.14186 -10.88296 -10.77677 -10.32015 -10.23787 -10.04258 -10.02119 -9.58137 -9.49483 -9.48549 -8.80022 -8.62550 -7.10829 -5.66434 -3.00342 2.43777 2.52307 3.38543 3.42766 3.47579 3.52023 3.53641 3.84682 4.13339 4.42737 4.48390 4.57475 4.61309 4.64344 4.70476 4.76508 4.80553 4.87076 4.92247 5.02928 5.07187 5.10568 5.14465 5.19877 5.23819 5.31625 5.33108 5.34470 5.38994 5.40673 5.53009 5.63683 5.72255 5.74274 5.85731 5.90685 6.00312 6.05579 6.40481 6.63057 6.68814 6.73692 6.83106 7.14809 7.88368 8.06495 8.10268 8.52780 9.32846 10.05450 10.26670 11.52149 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.002765 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.877420 B =10122.377345 C =10968.238818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.347 6.347 6 C 0.072 3.928 7 H 0.082 0.918 8 C -0.177 4.177 9 C 0.508 3.492 10 O -0.504 6.504 11 N -0.610 5.610 12 C 0.097 3.903 13 C -0.166 4.166 14 C 0.071 3.929 15 O -0.371 6.371 16 C 0.084 3.916 17 H 0.052 0.948 18 C 0.171 3.829 19 N -0.750 5.750 20 C -0.239 4.239 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.887 3.113 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.084 3.916 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.044 0.956 47 H 0.364 0.636 48 H 0.258 0.742 49 H 0.086 0.914 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 17.952 27.616 33.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.265 6.265 6 C 0.011 3.989 7 H 0.100 0.900 8 C -0.235 4.235 9 C 0.294 3.706 10 O -0.376 6.376 11 N -0.346 5.346 12 C -0.025 4.025 13 C -0.204 4.204 14 C -0.006 4.006 15 O -0.289 6.289 16 C 0.024 3.976 17 H 0.070 0.930 18 C 0.043 3.957 19 N -0.395 5.395 20 C -0.369 4.369 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.585 5.585 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.219 1.219 27 H -0.204 1.204 28 C -0.039 4.039 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.197 0.803 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.361 17.149 26.897 32.976 hybrid contribution 0.161 1.780 0.070 1.789 sum -8.200 18.929 26.966 33.952 Atomic orbital electron populations 1.22754 0.80945 1.03042 0.99775 1.87999 1.19697 1.26966 1.95339 1.22528 0.92056 0.85825 1.00931 1.22653 0.93879 0.97583 0.87553 1.88152 1.19257 1.81651 1.37472 1.21923 0.83901 0.94116 0.98970 0.89999 1.22366 1.01547 0.96657 1.02884 1.20445 0.82167 0.84592 0.83433 1.90770 1.46351 1.62818 1.37710 1.47885 1.11202 1.25698 1.49825 1.22153 0.88125 0.98253 0.93990 1.22501 0.96253 1.04426 0.97266 1.22146 1.01155 0.86536 0.90754 1.86411 1.29639 1.36545 1.76284 1.22338 0.84434 0.97004 0.93849 0.92968 1.20598 0.97910 0.91825 0.85371 1.42548 1.79918 1.07746 1.09302 1.19070 1.36240 0.90373 0.91192 0.89187 1.24644 1.01535 0.96942 0.96182 1.69709 1.52749 1.30890 1.05150 0.86494 0.78494 0.86139 0.77140 1.21090 1.21910 1.20430 1.22397 1.03036 0.85429 0.93029 0.89458 0.94284 0.93901 0.91746 0.92206 0.92261 0.91573 0.90590 0.90517 0.91106 0.89725 0.91290 0.89592 0.89653 0.93495 0.89279 0.94692 0.93883 0.80279 0.93180 0.89540 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.23 10.67 -40.08 -0.43 -4.65 16 3 C 0.06 0.51 6.32 37.16 0.23 0.74 16 4 C 0.06 0.48 6.13 37.16 0.23 0.71 16 5 O -0.35 -4.26 9.56 -59.22 -0.57 -4.82 16 6 C 0.07 0.73 2.27 -27.89 -0.06 0.67 16 7 H 0.08 0.58 6.91 -51.93 -0.36 0.23 16 8 C -0.18 -1.39 9.06 37.16 0.34 -1.05 16 9 C 0.51 7.12 6.89 -10.99 -0.08 7.04 16 10 O -0.50 -9.61 16.10 -13.60 -0.22 -9.83 16 11 N -0.61 -7.35 2.19 -172.47 -0.38 -7.73 16 12 C 0.10 0.77 5.47 -3.19 -0.02 0.75 16 13 C -0.17 -1.41 5.79 -27.17 -0.16 -1.56 16 14 C 0.07 0.85 6.38 36.42 0.23 1.08 16 15 O -0.37 -6.25 9.18 -26.44 -0.24 -6.49 16 16 C 0.08 1.47 2.73 -25.78 -0.07 1.40 16 17 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.17 3.59 5.95 -4.05 -0.02 3.57 16 19 N -0.75 -19.38 5.29 -59.91 -0.32 -19.69 16 20 C -0.24 -7.16 10.47 -15.06 -0.16 -7.31 16 21 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -30.55 13.97 55.49 0.78 -29.77 16 24 Si 0.89 23.46 27.74 -169.99 -4.71 18.75 16 25 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 27 H -0.28 -7.06 6.52 56.52 0.37 -6.69 16 28 C 0.08 1.20 4.82 -3.82 -0.02 1.18 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.33 8.04 -51.93 -0.42 -0.09 16 36 H 0.08 0.51 5.86 -51.93 -0.30 0.21 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 39 H 0.08 0.49 4.18 -51.93 -0.22 0.27 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 43 H 0.05 0.56 7.11 -51.93 -0.37 0.19 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.36 9.38 5.39 -40.82 -0.22 9.16 16 48 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 49 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 50 H 0.09 1.46 7.36 -51.93 -0.38 1.08 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -39.19 395.39 -7.28 -46.47 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.61 Total: 3.28 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 1.46 Total: 8.53 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.08 Total: -57.19 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.46 Total: -25.80 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.71 Total: 18.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.19 -7.28 -46.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201557079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.886 kcal (2) G-P(sol) polarization free energy of solvation -39.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds