Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42910 * 113.99955 * 2 1 4 4 C 1.52997 * 109.47089 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47025 * 65.00398 * 4 3 2 6 6 C 1.42898 * 113.99909 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47399 * 329.99934 * 6 5 4 8 8 C 1.53002 * 109.47005 * 90.00175 * 6 5 4 9 9 C 1.50698 * 109.46927 * 209.99680 * 6 5 4 10 10 O 1.21279 * 120.00295 * 349.13782 * 9 6 5 11 11 N 1.34780 * 119.99923 * 169.13442 * 9 6 5 12 12 C 1.47512 * 118.75754 * 353.85505 * 11 9 6 13 13 C 1.53561 * 111.03457 * 138.38907 * 12 11 9 14 14 C 1.51536 * 109.57744 * 320.01875 * 13 12 11 15 15 O 1.42155 * 108.75632 * 91.40479 * 14 13 12 16 16 C 1.38016 * 119.43672 * 272.77192 * 15 14 13 17 17 H 1.09001 * 109.47117 * 303.42202 * 16 15 14 18 18 C 1.52997 * 109.46912 * 183.42914 * 16 15 14 19 19 N 1.46501 * 109.47487 * 64.98566 * 18 16 15 20 20 C 1.36932 * 120.00420 * 180.27693 * 19 18 16 21 21 H 1.08003 * 120.00151 * 359.72767 * 20 19 18 22 22 C 1.38810 * 120.00280 * 179.72828 * 20 19 18 23 23 N 1.31619 * 120.00239 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99947 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46801 * 90.00106 * 24 22 20 26 26 H 1.48499 * 109.47197 * 210.00177 * 24 22 20 27 27 H 1.48504 * 109.47137 * 330.00328 * 24 22 20 28 28 C 1.45121 * 118.75952 * 173.86937 * 11 9 6 29 29 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47639 * 300.00150 * 1 2 3 31 31 H 1.09006 * 109.47144 * 60.00298 * 1 2 3 32 32 H 1.08997 * 109.46846 * 59.99785 * 3 2 1 33 33 H 1.08998 * 109.47194 * 299.99834 * 3 2 1 34 34 H 1.08994 * 109.47326 * 305.00487 * 4 3 2 35 35 H 1.08998 * 109.47287 * 184.99987 * 4 3 2 36 36 H 1.08997 * 109.46916 * 179.02124 * 8 6 5 37 37 H 1.09005 * 109.47234 * 299.01698 * 8 6 5 38 38 H 1.08997 * 109.47780 * 59.01754 * 8 6 5 39 39 H 1.09003 * 109.15989 * 258.78708 * 12 11 9 40 40 H 1.09002 * 109.16472 * 18.03523 * 12 11 9 41 41 H 1.09002 * 109.45721 * 80.05391 * 13 12 11 42 42 H 1.09003 * 109.45469 * 200.01201 * 13 12 11 43 43 H 1.09006 * 109.59300 * 211.18302 * 14 13 12 44 44 H 1.09000 * 109.59154 * 331.47171 * 14 13 12 45 45 H 1.09003 * 109.46983 * 304.99085 * 18 16 15 46 46 H 1.09003 * 109.47506 * 184.98840 * 18 16 15 47 47 H 0.97002 * 119.99656 * 0.02562 * 19 18 16 48 48 H 0.97001 * 120.00350 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.46048 * 149.24294 * 28 11 9 50 50 H 1.08996 * 109.46136 * 29.28096 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9657 0.5794 -1.2202 6 6 5.3821 0.4199 -1.3221 7 1 5.8783 1.2119 -0.7613 8 6 5.7847 -0.9403 -0.7486 9 6 5.7933 0.4961 -2.7699 10 8 4.9506 0.4715 -3.6418 11 7 7.0976 0.5917 -3.0959 12 6 8.0887 0.7576 -2.0160 13 6 9.3327 -0.1055 -2.2723 14 6 8.9114 -1.4522 -2.8245 15 8 8.8967 -1.3798 -4.2442 16 6 7.7577 -0.9424 -4.8893 17 1 6.9127 -1.5661 -4.5975 18 6 7.9613 -1.0352 -6.4028 19 7 8.1112 -2.4401 -6.7902 20 6 8.3115 -2.7706 -8.1038 21 1 8.3545 -1.9958 -8.8551 22 6 8.4591 -4.1013 -8.4701 23 7 8.6521 -4.4189 -9.7328 24 14 8.3854 -5.4414 -7.1708 25 1 6.9818 -5.8992 -7.0111 26 1 9.2344 -6.5851 -7.5905 27 1 8.8812 -4.9050 -5.8778 28 6 7.4738 0.5277 -4.4960 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8507 0.5686 0.8426 35 1 3.9784 2.1766 0.0902 36 1 6.8630 -1.0692 -0.8422 37 1 5.5030 -0.9889 0.3033 38 1 5.2751 -1.7317 -1.2981 39 1 8.3851 1.8051 -1.9603 40 1 7.6382 0.4624 -1.0684 41 1 9.9803 0.3955 -2.9919 42 1 9.8732 -0.2501 -1.3368 43 1 9.6202 -2.2163 -2.5050 44 1 7.9154 -1.7019 -2.4588 45 1 8.8586 -0.4834 -6.6831 46 1 7.0978 -0.6079 -6.9125 47 1 8.0723 -3.1360 -6.1155 48 1 8.7557 -5.3488 -9.9887 49 1 8.3698 1.1267 -4.6590 50 1 6.6607 0.9169 -5.1087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201557080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -136.098817 kcal Electronic energy + Delta-G solvation = -30023.610923 eV Core-core repulsion = 25859.828544 eV Total energy + Delta-G solvation = -4163.782379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.90292 -39.11781 -38.33748 -37.32041 -35.84511 -34.73725 -33.02959 -32.26910 -31.12977 -30.11393 -29.03493 -26.90959 -26.61874 -25.61889 -24.16376 -22.89428 -22.19611 -21.69923 -21.04732 -19.37938 -17.87442 -17.60903 -17.40332 -17.06482 -16.62486 -16.33082 -15.82898 -15.75078 -15.59782 -15.21551 -14.98916 -14.56773 -14.30825 -14.02864 -13.79105 -13.47825 -13.22641 -13.15290 -12.86154 -12.74850 -12.60334 -12.41894 -12.38579 -12.15177 -12.03880 -11.83091 -11.72704 -11.44456 -11.33926 -11.13115 -10.88339 -10.79073 -10.35464 -10.18537 -10.04537 -10.03157 -9.59529 -9.51728 -9.49422 -8.81334 -8.64676 -7.12454 -5.67312 -3.01626 2.42162 2.51063 3.37060 3.42380 3.47356 3.52009 3.53424 3.83113 4.14952 4.41425 4.46695 4.56594 4.60454 4.68946 4.69824 4.75155 4.79666 4.90199 4.93245 5.03185 5.07741 5.09362 5.11749 5.21269 5.25294 5.32881 5.33686 5.37533 5.38825 5.39636 5.51319 5.62896 5.72394 5.77585 5.84426 5.90373 5.99356 6.03560 6.38739 6.60693 6.69128 6.71615 6.82553 7.12569 7.86674 8.03822 8.08600 8.51662 9.31341 10.03958 10.24762 11.51177 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002901 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.794341 B = 9648.498402 C =10672.993763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.347 6.347 6 C 0.072 3.928 7 H 0.082 0.918 8 C -0.177 4.177 9 C 0.508 3.492 10 O -0.507 6.507 11 N -0.610 5.610 12 C 0.097 3.903 13 C -0.167 4.167 14 C 0.069 3.931 15 O -0.370 6.370 16 C 0.084 3.916 17 H 0.051 0.949 18 C 0.171 3.829 19 N -0.750 5.750 20 C -0.240 4.240 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.082 3.918 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.044 0.956 47 H 0.364 0.636 48 H 0.258 0.742 49 H 0.086 0.914 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 15.472 28.628 33.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.265 6.265 6 C 0.011 3.989 7 H 0.100 0.900 8 C -0.234 4.234 9 C 0.294 3.706 10 O -0.380 6.380 11 N -0.345 5.345 12 C -0.025 4.025 13 C -0.205 4.205 14 C -0.008 4.008 15 O -0.288 6.288 16 C 0.023 3.977 17 H 0.069 0.931 18 C 0.043 3.957 19 N -0.396 5.396 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.585 5.585 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.200 1.200 28 C -0.041 4.041 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.196 0.804 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.403 15.229 27.653 32.425 hybrid contribution -0.215 -0.569 1.365 1.494 sum -7.617 14.660 29.018 33.391 Atomic orbital electron populations 1.22753 0.80945 1.02992 0.99847 1.87971 1.19702 1.27066 1.95364 1.22531 0.92044 0.85762 1.00999 1.22651 0.93878 0.97309 0.87813 1.88157 1.19122 1.81592 1.37596 1.21906 0.84052 0.98889 0.94086 0.90034 1.22372 1.02308 0.96627 1.02103 1.20467 0.82509 0.76873 0.90730 1.90756 1.49987 1.47007 1.50243 1.47866 1.05830 1.73374 1.07444 1.22160 0.90004 1.00373 0.89967 1.22509 0.97447 0.97622 1.02936 1.22192 1.00944 0.95892 0.81735 1.86431 1.38079 1.85909 1.18428 1.22357 0.87979 0.92657 0.94660 0.93116 1.20591 0.99311 0.88162 0.87659 1.42574 1.89118 1.01509 1.06358 1.19059 1.41257 0.93305 0.83330 0.89176 1.24642 1.01988 0.96791 0.95800 1.69705 1.56588 1.17336 1.14829 0.86542 0.77639 0.82485 0.82002 1.21166 1.21816 1.20030 1.22409 1.02258 0.98712 0.80747 0.89491 0.94264 0.93869 0.91746 0.92122 0.92176 0.91678 0.90592 0.90957 0.90599 0.91219 0.89690 0.89667 0.89586 0.89287 0.93273 0.94602 0.93803 0.80366 0.93158 0.89543 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.11 10.67 -40.07 -0.43 -4.53 16 3 C 0.06 0.52 6.32 37.16 0.23 0.75 16 4 C 0.06 0.49 6.13 37.16 0.23 0.72 16 5 O -0.35 -4.31 9.51 -59.57 -0.57 -4.88 16 6 C 0.07 0.74 2.27 -27.88 -0.06 0.68 16 7 H 0.08 0.56 6.83 -51.93 -0.35 0.20 16 8 C -0.18 -1.55 9.11 37.16 0.34 -1.21 16 9 C 0.51 7.02 6.96 -10.99 -0.08 6.94 16 10 O -0.51 -9.47 15.94 -14.11 -0.22 -9.70 16 11 N -0.61 -7.19 2.19 -172.47 -0.38 -7.57 16 12 C 0.10 0.75 5.41 -3.20 -0.02 0.73 16 13 C -0.17 -1.38 5.78 -27.18 -0.16 -1.54 16 14 C 0.07 0.82 6.37 36.42 0.23 1.05 16 15 O -0.37 -6.16 9.38 -26.54 -0.25 -6.41 16 16 C 0.08 1.44 2.68 -25.78 -0.07 1.37 16 17 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.17 3.55 5.92 -4.04 -0.02 3.52 16 19 N -0.75 -19.25 5.34 -59.91 -0.32 -19.57 16 20 C -0.24 -7.15 10.47 -15.06 -0.16 -7.30 16 21 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.94 -30.48 13.97 55.49 0.78 -29.70 16 24 Si 0.88 23.30 27.73 -169.99 -4.71 18.58 16 25 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 28 C 0.08 1.14 4.91 -3.83 -0.02 1.12 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 35 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.08 0.55 4.69 -51.93 -0.24 0.31 16 37 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.48 4.18 -51.93 -0.22 0.26 16 41 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.58 6.04 -51.93 -0.31 0.26 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.36 9.29 5.52 -40.82 -0.23 9.06 16 48 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 49 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 50 H 0.10 1.48 7.20 -51.93 -0.37 1.11 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -38.84 392.84 -7.19 -46.03 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.47 Total: 3.65 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 1.47 Total: 8.17 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.08 Total: -56.83 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.47 Total: -25.53 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.71 Total: 18.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.84 -7.19 -46.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201557080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.067 kcal (2) G-P(sol) polarization free energy of solvation -38.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds