Wall clock time and date at job start Tue Mar 31 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47350 * 180.02562 * 5 4 3 7 7 C 1.42899 * 114.00565 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47515 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99940 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00003 * 179.97438 * 8 7 6 11 11 C 1.47515 * 118.75539 * 0.02562 * 10 8 7 12 12 C 1.53578 * 111.02777 * 138.34658 * 11 10 8 13 13 C 1.51535 * 109.58468 * 320.02671 * 12 11 10 14 14 O 1.42149 * 108.76034 * 91.39189 * 13 12 11 15 15 C 1.38015 * 119.44573 * 272.77507 * 14 13 12 16 16 H 1.09007 * 109.46411 * 303.42844 * 15 14 13 17 17 C 1.52993 * 109.47100 * 183.43214 * 15 14 13 18 18 N 1.46504 * 109.47551 * 65.00057 * 17 15 14 19 19 C 1.36934 * 120.00160 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99943 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00107 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99781 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00261 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47163 * 89.99874 * 23 21 19 25 25 H 1.48499 * 109.47014 * 209.99707 * 23 21 19 26 26 H 1.48494 * 109.47143 * 330.00008 * 23 21 19 27 27 C 1.45114 * 118.75971 * 179.73077 * 10 8 7 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 33 33 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 34 34 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 35 35 H 1.09005 * 109.47059 * 299.99976 * 5 4 3 36 36 H 1.08999 * 109.46874 * 59.99868 * 5 4 3 37 37 H 1.08996 * 109.47000 * 300.00465 * 7 6 5 38 38 H 1.09001 * 109.46445 * 59.99649 * 7 6 5 39 39 H 1.08994 * 109.16643 * 258.74583 * 11 10 8 40 40 H 1.09002 * 109.17124 * 17.95103 * 11 10 8 41 41 H 1.09002 * 109.44889 * 80.05375 * 12 11 10 42 42 H 1.08994 * 109.45197 * 200.01134 * 12 11 10 43 43 H 1.08996 * 109.58722 * 211.18091 * 13 12 11 44 44 H 1.09007 * 109.58753 * 331.61669 * 13 12 11 45 45 H 1.09005 * 109.46922 * 184.99911 * 17 15 14 46 46 H 1.09001 * 109.47185 * 304.99441 * 17 15 14 47 47 H 0.97001 * 119.99696 * 359.97438 * 18 17 15 48 48 H 0.96996 * 119.99627 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.45830 * 29.32990 * 27 10 8 50 50 H 1.08999 * 109.46503 * 149.28840 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 8 5.5822 2.4696 0.0000 7 6 6.2648 3.7251 -0.0012 8 6 7.7530 3.4878 -0.0004 9 8 8.1865 2.3552 0.0005 10 7 8.6022 4.5344 -0.0018 11 6 8.0452 5.9003 -0.0035 12 6 8.8289 6.8163 0.9480 13 6 9.1811 6.0554 2.2103 14 8 10.4561 5.4508 2.0390 15 6 10.5424 4.2020 1.4579 16 1 9.9328 3.4960 2.0221 17 6 11.9996 3.7361 1.4640 18 7 12.4478 3.5520 2.8466 19 6 13.7269 3.1352 3.1020 20 1 14.4055 2.9426 2.2842 21 6 14.1516 2.9613 4.4120 22 7 13.3250 3.1975 5.4087 23 14 15.8967 2.3933 4.7605 24 1 16.7853 3.5760 4.8917 25 1 15.9205 1.6138 6.0242 26 1 16.3717 1.5389 3.6428 27 6 10.0300 4.2750 0.0049 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 3.8567 0.6439 0.8908 34 1 3.8575 0.6436 -0.8892 35 1 3.8364 3.1228 -0.8905 36 1 3.8358 3.1238 0.8895 37 1 5.9868 4.2889 -0.8916 38 1 5.9869 4.2904 0.8883 39 1 8.0960 6.3063 -1.0138 40 1 7.0031 5.8623 0.3140 41 1 9.7438 7.1505 0.4586 42 1 8.2176 7.6814 1.2046 43 1 9.2133 6.7436 3.0548 44 1 8.4326 5.2842 2.3929 45 1 12.0813 2.7912 0.9267 46 1 12.6228 4.4860 0.9768 47 1 11.8384 3.7254 3.5811 48 1 13.6219 3.0763 6.3241 49 1 10.2290 3.3263 -0.4935 50 1 10.5473 5.0770 -0.5216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201824161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:29 Heat of formation + Delta-G solvation = -147.869283 kcal Electronic energy + Delta-G solvation = -28775.038464 eV Core-core repulsion = 24610.745679 eV Total energy + Delta-G solvation = -4164.292785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.65843 -38.92214 -38.41233 -37.61182 -35.67616 -34.57096 -33.25268 -32.84268 -30.90113 -29.83566 -28.07514 -27.25236 -26.47591 -25.16854 -24.62169 -22.62275 -22.07177 -21.71701 -20.93732 -19.26951 -17.78571 -17.26255 -17.11355 -16.99077 -16.71862 -16.46863 -16.29610 -16.00267 -15.57823 -15.12061 -14.99568 -14.73040 -14.33823 -14.15005 -13.80760 -13.55496 -13.32774 -13.05246 -12.88754 -12.66762 -12.59213 -12.26028 -12.24257 -12.00939 -11.91436 -11.63953 -11.47769 -11.42643 -11.34077 -10.96753 -10.77415 -10.74500 -10.24822 -10.13814 -10.06538 -10.00215 -9.75973 -9.61983 -9.40454 -8.78796 -8.58293 -6.80300 -5.65270 -2.93323 2.42383 2.49538 3.10927 3.51214 3.55575 3.57896 3.72972 3.96272 4.28804 4.46752 4.51158 4.60537 4.65916 4.68344 4.69131 4.77994 4.79669 4.86361 4.88416 4.90852 4.96002 4.98487 5.10121 5.23537 5.25870 5.28290 5.33341 5.41774 5.46440 5.61218 5.67708 5.68189 5.76485 5.83741 5.95406 6.00644 6.11121 6.37719 6.43721 6.66226 6.70689 6.73980 6.82342 7.15459 7.78784 8.01678 8.07411 8.53030 9.64440 10.22857 10.58759 11.57755 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002134 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.271229 B =13118.171341 C =14387.004863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.066 3.934 6 O -0.359 6.359 7 C 0.047 3.953 8 C 0.506 3.494 9 O -0.507 6.507 10 N -0.609 5.609 11 C 0.104 3.896 12 C -0.167 4.167 13 C 0.073 3.927 14 O -0.368 6.368 15 C 0.088 3.912 16 H 0.053 0.947 17 C 0.166 3.834 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.082 3.918 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.028 0.972 47 H 0.387 0.613 48 H 0.254 0.746 49 H 0.095 0.905 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.818 6.906 -14.469 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.158 4.158 5 C -0.011 4.011 6 O -0.278 6.278 7 C -0.033 4.033 8 C 0.292 3.708 9 O -0.380 6.380 10 N -0.345 5.345 11 C -0.018 4.018 12 C -0.205 4.205 13 C -0.004 4.004 14 O -0.286 6.286 15 C 0.028 3.972 16 H 0.070 0.930 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.041 4.041 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.051 5.965 -14.455 30.384 hybrid contribution -0.005 0.341 0.381 0.512 sum -26.056 6.306 -14.074 30.278 Atomic orbital electron populations 1.22763 0.80736 1.02992 1.00001 1.87894 1.19894 1.27681 1.95422 1.22349 0.93418 0.84968 1.00344 1.21355 0.92514 0.96635 1.05328 1.22360 0.80965 0.97383 1.00426 1.88027 1.17511 1.26833 1.95388 1.22274 0.91133 0.87605 1.02272 1.20291 0.88017 0.85227 0.77260 1.90778 1.78349 1.21962 1.46924 1.47882 1.06705 1.05795 1.74136 1.22027 0.97594 0.81840 1.00355 1.22521 1.01783 0.98682 0.97555 1.22112 0.86078 0.95967 0.96230 1.86438 1.28639 1.33028 1.80522 1.22187 0.99080 0.84887 0.91074 0.92961 1.20609 0.88876 0.97019 0.89700 1.42223 1.12802 1.81187 1.00781 1.19239 0.88951 1.36739 0.91837 0.91154 1.24738 0.98086 1.02723 0.95585 1.69683 1.34642 1.55663 0.98177 0.86171 0.84509 0.78111 0.77303 1.21802 1.21853 1.20781 1.22323 0.78795 1.03567 0.99397 0.93957 0.94026 0.89433 0.93112 0.93032 0.89791 0.89928 0.92970 0.92859 0.90336 0.90263 0.91193 0.90300 0.89766 0.89628 0.89226 0.93608 0.94700 0.95466 0.77961 0.93643 0.88722 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.51 10.70 -35.23 -0.38 -3.89 16 3 C 0.07 0.46 5.94 37.16 0.22 0.68 16 4 C -0.12 -1.03 5.95 -26.73 -0.16 -1.19 16 5 C 0.07 0.51 5.94 37.16 0.22 0.73 16 6 O -0.36 -4.35 9.88 -55.14 -0.54 -4.89 16 7 C 0.05 0.46 4.75 36.00 0.17 0.63 16 8 C 0.51 7.06 7.71 -10.99 -0.08 6.97 16 9 O -0.51 -9.65 15.93 -14.35 -0.23 -9.88 16 10 N -0.61 -7.42 2.20 -172.83 -0.38 -7.80 16 11 C 0.10 0.82 6.00 -3.19 -0.02 0.81 16 12 C -0.17 -1.48 5.78 -27.17 -0.16 -1.64 16 13 C 0.07 0.94 6.38 36.42 0.23 1.17 16 14 O -0.37 -6.56 9.38 -26.54 -0.25 -6.81 16 15 C 0.09 1.60 2.67 -26.09 -0.07 1.53 16 16 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 17 C 0.17 3.62 5.92 -4.04 -0.02 3.60 16 18 N -0.73 -19.81 5.54 -59.91 -0.33 -20.14 16 19 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -29.50 13.06 55.49 0.72 -28.78 16 23 Si 0.91 23.29 29.55 -169.99 -5.02 18.26 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 27 C 0.08 1.20 4.82 -4.14 -0.02 1.18 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 38 H 0.08 0.58 7.41 -51.93 -0.38 0.20 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.43 5.88 -51.93 -0.31 0.12 16 41 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.59 7.40 -51.92 -0.38 0.21 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.39 11.23 7.65 -40.82 -0.31 10.92 16 48 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.09 1.49 7.26 -51.93 -0.38 1.11 16 50 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -38.03 403.96 -8.05 -46.08 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.91 Total: 3.69 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 1.18 Total: 8.06 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.01 Total: -56.71 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.40 Total: -25.47 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.03 -8.05 -46.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201824161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.784 kcal (2) G-P(sol) polarization free energy of solvation -38.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds