Wall clock time and date at job start Tue Mar 31 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99551 * 2 1 4 4 H 1.48505 * 109.46832 * 240.00224 * 3 2 1 5 5 H 1.48503 * 109.47562 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47292 * 120.00191 * 3 2 1 7 7 C 1.38804 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99612 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00227 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.94438 * 23.59263 * 10 9 7 12 12 C 1.53947 * 113.66246 * 252.18687 * 10 9 7 13 13 C 1.53940 * 87.29448 * 270.26168 * 12 10 9 14 14 H 1.09004 * 113.66349 * 220.79405 * 13 12 10 15 15 N 1.46501 * 113.74771 * 89.75386 * 13 12 10 16 16 C 1.34780 * 120.00231 * 107.76970 * 15 13 12 17 17 O 1.21288 * 119.99799 * 0.02562 * 16 15 13 18 18 C 1.50692 * 119.99929 * 179.97438 * 16 15 13 19 19 C 1.53006 * 109.47317 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47150 * 180.02562 * 19 18 16 21 21 C 1.38599 * 120.79817 * 269.71778 * 20 19 18 22 22 N 1.32329 * 119.10124 * 179.72479 * 21 20 19 23 23 C 1.31802 * 120.81981 * 0.56188 * 22 21 20 24 24 N 1.31794 * 121.75309 * 359.71354 * 23 22 21 25 25 C 1.32337 * 120.81860 * 359.97438 * 24 23 22 26 26 C 1.52905 * 86.78782 * 335.26706 * 13 12 10 27 27 C 1.52904 * 121.14213 * 150.61642 * 26 13 12 28 28 C 1.53957 * 86.78105 * 100.82198 * 27 26 13 29 29 C 1.52914 * 121.13770 * 259.18710 * 26 13 12 30 30 H 0.96994 * 120.00844 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99604 * 0.02562 * 9 7 2 32 32 H 1.09003 * 113.57959 * 155.65686 * 12 10 9 33 33 H 1.08997 * 113.65032 * 24.87938 * 12 10 9 34 34 H 0.97003 * 120.00114 * 287.76517 * 15 13 12 35 35 H 1.08996 * 109.47550 * 299.99938 * 18 16 15 36 36 H 1.09003 * 109.47303 * 60.00408 * 18 16 15 37 37 H 1.09005 * 109.46472 * 300.00449 * 19 18 16 38 38 H 1.09003 * 109.46655 * 59.99945 * 19 18 16 39 39 H 1.07997 * 120.44960 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.12221 * 179.68188 * 23 22 21 41 41 H 1.08002 * 120.44877 * 179.97438 * 25 24 23 42 42 H 1.09003 * 113.66244 * 346.35405 * 27 26 13 43 43 H 1.08997 * 113.75201 * 215.30647 * 27 26 13 44 44 H 1.08998 * 113.57948 * 139.33665 * 28 27 26 45 45 H 1.09000 * 113.57875 * 270.13309 * 28 27 26 46 46 H 1.08993 * 113.66382 * 144.70253 * 29 26 13 47 47 H 1.08992 * 113.66018 * 13.64281 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0673 -3.5648 0.4012 12 6 1.9936 -4.4075 -1.3430 13 6 0.7249 -5.0990 -0.8119 14 1 0.6688 -6.1593 -1.0583 15 7 -0.5125 -4.3768 -1.1177 16 6 -1.3628 -4.8594 -2.0454 17 8 -1.1037 -5.8919 -2.6268 18 6 -2.6359 -4.1169 -2.3595 19 6 -3.4143 -4.8727 -3.4383 20 6 -4.6872 -4.1297 -3.7528 21 6 -5.8571 -4.4019 -3.0613 22 7 -6.9542 -3.7255 -3.3612 23 6 -6.9456 -2.8115 -4.3109 24 7 -5.8535 -2.5302 -4.9928 25 6 -4.7174 -3.1617 -4.7442 26 6 1.2658 -4.8229 0.5914 27 6 0.3217 -4.6167 1.7763 28 6 0.6305 -6.0742 2.1645 29 6 1.9587 -5.9192 1.4015 30 1 -0.4851 0.8399 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.8285 -5.0902 -1.5014 33 1 1.8104 -3.7580 -2.1989 34 1 -0.7200 -3.5514 -0.6524 35 1 -3.2445 -4.0417 -1.4584 36 1 -2.3939 -3.1167 -2.7191 37 1 -2.8059 -4.9483 -4.3396 38 1 -3.6563 -5.8727 -3.0783 39 1 -5.8720 -5.1524 -2.2849 40 1 -7.8579 -2.2794 -4.5366 41 1 -3.8260 -2.9266 -5.3070 42 1 -0.7158 -4.4519 1.4856 43 1 0.6800 -3.8856 2.5011 44 1 0.7584 -6.2221 3.2368 45 1 -0.0487 -6.7984 1.7148 46 1 2.7785 -5.5541 2.0201 47 1 2.2289 -6.7947 0.8113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203186274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:15 Heat of formation + Delta-G solvation = 62.238099 kcal Electronic energy + Delta-G solvation = -28168.896124 eV Core-core repulsion = 24353.315950 eV Total energy + Delta-G solvation = -3815.580174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -41.19488 -40.66709 -38.87722 -35.38543 -34.82156 -33.85289 -33.66933 -32.36108 -30.49187 -29.73887 -25.97753 -25.47069 -24.75966 -24.48808 -24.06431 -22.97157 -21.87759 -20.24041 -19.97884 -18.25418 -17.80487 -17.76931 -17.21040 -16.79323 -15.71705 -15.39971 -15.18485 -15.04243 -14.72969 -14.58629 -14.12121 -13.87490 -13.82319 -13.73863 -13.21257 -13.10343 -12.91436 -12.54675 -12.35130 -12.10903 -11.94820 -11.56676 -11.45254 -11.24563 -11.00613 -10.98192 -10.97746 -10.91489 -10.69778 -10.29653 -10.13029 -9.90338 -9.81990 -9.70776 -9.42002 -9.38432 -9.35034 -8.91882 -8.56672 -7.10153 -5.91912 -3.20156 0.69537 0.89709 2.85167 3.33803 3.36676 3.42154 3.42470 3.62686 3.98031 4.05296 4.42360 4.43951 4.53390 4.63782 4.72428 4.90422 4.92690 4.96877 5.11675 5.13957 5.17661 5.28993 5.33549 5.37271 5.53676 5.57744 5.60368 5.82990 5.85132 5.93002 5.94122 5.96025 5.98813 6.06906 6.10177 6.21163 6.23105 6.30228 6.38351 6.58029 6.65818 6.71098 6.76670 6.91793 7.05786 7.60435 7.84535 7.88806 8.27641 8.48778 9.38637 9.93347 10.27083 11.30770 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.003581 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.379712 B = 7817.759032 C =10039.398905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.699 5.699 10 C 0.179 3.821 11 H 0.065 0.935 12 C -0.186 4.186 13 C 0.151 3.849 14 H 0.091 0.909 15 N -0.697 5.697 16 C 0.518 3.482 17 O -0.554 6.554 18 C -0.139 4.139 19 C -0.054 4.054 20 C -0.182 4.182 21 C 0.149 3.851 22 N -0.520 5.520 23 C 0.283 3.717 24 N -0.518 5.518 25 C 0.152 3.848 26 C -0.133 4.133 27 C -0.114 4.114 28 C -0.142 4.142 29 C -0.104 4.104 30 H 0.257 0.743 31 H 0.379 0.621 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -11.388 -2.721 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.067 3.933 11 H 0.083 0.917 12 C -0.228 4.228 13 C 0.045 3.955 14 H 0.109 0.891 15 N -0.349 5.349 16 C 0.304 3.696 17 O -0.433 6.433 18 C -0.179 4.179 19 C -0.093 4.093 20 C -0.186 4.186 21 C -0.016 4.016 22 N -0.233 5.233 23 C -0.004 4.004 24 N -0.231 5.231 25 C -0.014 4.014 26 C -0.135 4.135 27 C -0.152 4.152 28 C -0.179 4.179 29 C -0.142 4.142 30 H 0.067 0.933 31 H 0.214 0.786 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.185 0.815 40 H 0.211 0.789 41 H 0.186 0.814 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.571 -11.401 -3.326 14.084 hybrid contribution 0.818 1.051 0.376 1.384 sum -6.753 -10.349 -2.950 12.705 Atomic orbital electron populations 1.69598 1.05112 1.26081 1.57462 1.24707 0.95543 0.97708 1.02548 0.86246 0.78560 0.83324 0.77916 1.21216 1.21675 1.21198 1.19238 0.91161 0.83789 1.43166 0.90954 1.42079 1.05212 0.99395 1.87201 1.21047 0.94913 0.85117 0.92211 0.91665 1.24285 0.96423 1.00253 1.01837 1.21411 0.83944 0.95940 0.94168 0.89113 1.45792 1.20825 1.27682 1.40631 1.20483 0.84871 0.85136 0.79072 1.90662 1.76790 1.24620 1.51242 1.21664 0.94626 1.00920 1.00666 1.20200 0.91245 0.98083 0.99776 1.21759 0.98238 0.99823 0.98809 1.23196 0.87275 0.95356 0.95822 1.68428 1.30343 1.07951 1.16565 1.24961 0.96538 0.91457 0.87490 1.68442 1.00041 1.26639 1.27980 1.23249 0.96178 0.89149 0.92815 1.23451 0.98603 0.98508 0.92946 1.22495 0.99074 0.95992 0.97652 1.22862 0.97657 0.97766 0.99614 1.22481 0.96794 0.97229 0.97725 0.93311 0.78583 0.90511 0.91023 0.75316 0.88734 0.88187 0.89453 0.89555 0.81532 0.78922 0.81402 0.92092 0.89495 0.91957 0.90817 0.89673 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.03 13.06 55.49 0.72 -25.30 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.28 9.97 -15.06 -0.15 -6.43 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.70 -15.82 4.98 -52.99 -0.26 -16.08 16 10 C 0.18 3.32 4.36 -67.48 -0.29 3.03 16 11 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 12 C -0.19 -3.18 7.69 -25.76 -0.20 -3.38 16 13 C 0.15 2.41 4.12 -67.49 -0.28 2.13 16 14 H 0.09 1.47 7.46 -51.93 -0.39 1.08 16 15 N -0.70 -11.07 4.69 -53.38 -0.25 -11.32 16 16 C 0.52 7.80 7.83 -10.99 -0.09 7.71 16 17 O -0.55 -9.68 15.58 5.55 0.09 -9.59 16 18 C -0.14 -1.62 5.68 -27.88 -0.16 -1.78 16 19 C -0.05 -0.55 4.68 -27.88 -0.13 -0.68 16 20 C -0.18 -1.84 5.17 -104.36 -0.54 -2.38 16 21 C 0.15 1.51 11.01 -17.20 -0.19 1.32 16 22 N -0.52 -5.91 10.44 -14.58 -0.15 -6.07 16 23 C 0.28 3.05 12.29 -92.15 -1.13 1.92 16 24 N -0.52 -6.14 10.44 -14.58 -0.15 -6.29 16 25 C 0.15 1.63 11.01 -17.20 -0.19 1.44 16 26 C -0.13 -2.02 0.78 -154.71 -0.12 -2.14 16 27 C -0.11 -1.71 7.27 -26.28 -0.19 -1.91 16 28 C -0.14 -1.75 8.08 -25.74 -0.21 -1.96 16 29 C -0.10 -1.32 7.84 -26.28 -0.21 -1.53 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.38 8.76 5.34 -40.82 -0.22 8.54 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.41 6.92 5.94 -40.82 -0.24 6.68 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 38 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 39 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.06 0.92 7.58 -51.93 -0.39 0.53 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -30.61 387.47 -10.48 -41.09 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -7.12 Total: 16.31 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -4.17 Total: -4.97 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.09 Total: -65.06 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.61 -10.48 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203186274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.327 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds