Wall clock time and date at job start Tue Mar 31 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99551 * 2 1 4 4 H 1.48505 * 109.46832 * 240.00224 * 3 2 1 5 5 H 1.48503 * 109.47562 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47292 * 120.00191 * 3 2 1 7 7 C 1.38804 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99612 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00227 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.94438 * 23.59263 * 10 9 7 12 12 C 1.53947 * 113.66246 * 252.18687 * 10 9 7 13 13 C 1.53940 * 87.29448 * 270.26168 * 12 10 9 14 14 H 1.09004 * 113.66349 * 220.79405 * 13 12 10 15 15 N 1.46501 * 113.74771 * 89.75386 * 13 12 10 16 16 C 1.34780 * 120.00231 * 107.76970 * 15 13 12 17 17 O 1.21288 * 119.99799 * 0.02562 * 16 15 13 18 18 C 1.50692 * 119.99929 * 179.97438 * 16 15 13 19 19 C 1.53006 * 109.47317 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47150 * 180.02562 * 19 18 16 21 21 C 1.38599 * 120.79817 * 269.71778 * 20 19 18 22 22 N 1.32329 * 119.10124 * 179.72479 * 21 20 19 23 23 C 1.31802 * 120.81981 * 0.56188 * 22 21 20 24 24 N 1.31794 * 121.75309 * 359.71354 * 23 22 21 25 25 C 1.32337 * 120.81860 * 359.97438 * 24 23 22 26 26 C 1.52905 * 86.78782 * 335.26706 * 13 12 10 27 27 C 1.52904 * 121.14213 * 150.61642 * 26 13 12 28 28 C 1.53957 * 86.78105 * 100.82198 * 27 26 13 29 29 C 1.52914 * 121.13770 * 259.18710 * 26 13 12 30 30 H 0.96994 * 120.00844 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99604 * 0.02562 * 9 7 2 32 32 H 1.09003 * 113.57959 * 155.65686 * 12 10 9 33 33 H 1.08997 * 113.65032 * 24.87938 * 12 10 9 34 34 H 0.97003 * 120.00114 * 287.76517 * 15 13 12 35 35 H 1.08996 * 109.47550 * 299.99938 * 18 16 15 36 36 H 1.09003 * 109.47303 * 60.00408 * 18 16 15 37 37 H 1.09005 * 109.46472 * 300.00449 * 19 18 16 38 38 H 1.09003 * 109.46655 * 59.99945 * 19 18 16 39 39 H 1.07997 * 120.44960 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.12221 * 179.68188 * 23 22 21 41 41 H 1.08002 * 120.44877 * 179.97438 * 25 24 23 42 42 H 1.09003 * 113.66244 * 346.35405 * 27 26 13 43 43 H 1.08997 * 113.75201 * 215.30647 * 27 26 13 44 44 H 1.08998 * 113.57948 * 139.33665 * 28 27 26 45 45 H 1.09000 * 113.57875 * 270.13309 * 28 27 26 46 46 H 1.08993 * 113.66382 * 144.70253 * 29 26 13 47 47 H 1.08992 * 113.66018 * 13.64281 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0673 -3.5648 0.4012 12 6 1.9936 -4.4075 -1.3430 13 6 0.7249 -5.0990 -0.8119 14 1 0.6688 -6.1593 -1.0583 15 7 -0.5125 -4.3768 -1.1177 16 6 -1.3628 -4.8594 -2.0454 17 8 -1.1037 -5.8919 -2.6268 18 6 -2.6359 -4.1169 -2.3595 19 6 -3.4143 -4.8727 -3.4383 20 6 -4.6872 -4.1297 -3.7528 21 6 -5.8571 -4.4019 -3.0613 22 7 -6.9542 -3.7255 -3.3612 23 6 -6.9456 -2.8115 -4.3109 24 7 -5.8535 -2.5302 -4.9928 25 6 -4.7174 -3.1617 -4.7442 26 6 1.2658 -4.8229 0.5914 27 6 0.3217 -4.6167 1.7763 28 6 0.6305 -6.0742 2.1645 29 6 1.9587 -5.9192 1.4015 30 1 -0.4851 0.8399 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.8285 -5.0902 -1.5014 33 1 1.8104 -3.7580 -2.1989 34 1 -0.7200 -3.5514 -0.6524 35 1 -3.2445 -4.0417 -1.4584 36 1 -2.3939 -3.1167 -2.7191 37 1 -2.8059 -4.9483 -4.3396 38 1 -3.6563 -5.8727 -3.0783 39 1 -5.8720 -5.1524 -2.2849 40 1 -7.8579 -2.2794 -4.5366 41 1 -3.8260 -2.9266 -5.3070 42 1 -0.7158 -4.4519 1.4856 43 1 0.6800 -3.8856 2.5011 44 1 0.7584 -6.2221 3.2368 45 1 -0.0487 -6.7984 1.7148 46 1 2.7785 -5.5541 2.0201 47 1 2.2289 -6.7947 0.8113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203186274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:10 Heat of formation + Delta-G solvation = 45.109362 kcal Electronic energy + Delta-G solvation = -28169.638882 eV Core-core repulsion = 24353.315950 eV Total energy + Delta-G solvation = -3816.322932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 5.06 seconds Orbital eigenvalues (eV) -42.06567 -41.89024 -40.09459 -36.70229 -35.78122 -35.28583 -34.67218 -33.83743 -31.84306 -31.11134 -27.00899 -26.79552 -25.90312 -25.56218 -25.33263 -24.36136 -22.90441 -21.50584 -21.21672 -19.70156 -18.85689 -18.59479 -18.55814 -18.01874 -16.93432 -16.79223 -16.48529 -16.13604 -16.05850 -15.72062 -15.44150 -15.13777 -14.82849 -14.58252 -14.52243 -14.25333 -14.22196 -13.91994 -13.32010 -13.27993 -13.16171 -13.12020 -12.86198 -12.69879 -12.51971 -12.21338 -12.15483 -11.94125 -11.84187 -11.82513 -11.82010 -11.31069 -11.14776 -10.87922 -10.78270 -10.62950 -10.32794 -10.20921 -9.86521 -8.96486 -7.95293 -5.21331 -0.10708 0.08892 1.48993 1.49545 1.55379 1.64035 2.16967 2.56276 2.79499 3.25157 3.28677 3.37889 3.43196 3.54073 3.66346 3.72132 3.82269 3.84640 3.96490 3.98651 4.05883 4.14734 4.26126 4.30503 4.33480 4.51280 4.61745 4.66141 4.68565 4.77057 4.82566 4.88806 4.97428 5.03379 5.10361 5.11332 5.13149 5.14233 5.22052 5.24518 5.44100 5.53179 5.55915 5.66346 5.72184 5.96571 6.28392 6.57340 7.08244 7.23659 7.35953 8.10002 8.34139 9.27187 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.003581 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.379712 B = 7817.759032 C =10039.398905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.063 4.063 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.708 5.708 10 C 0.163 3.837 11 H 0.061 0.939 12 C -0.179 4.179 13 C 0.154 3.846 14 H 0.096 0.904 15 N -0.702 5.702 16 C 0.517 3.483 17 O -0.577 6.577 18 C -0.132 4.132 19 C -0.042 4.042 20 C -0.180 4.180 21 C 0.147 3.853 22 N -0.536 5.536 23 C 0.276 3.724 24 N -0.540 5.540 25 C 0.141 3.859 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.096 4.096 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.403 0.597 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.191 0.809 40 H 0.218 0.782 41 H 0.181 0.819 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 -12.851 -2.193 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.052 3.948 11 H 0.079 0.921 12 C -0.221 4.221 13 C 0.049 3.951 14 H 0.114 0.886 15 N -0.352 5.352 16 C 0.305 3.695 17 O -0.458 6.458 18 C -0.172 4.172 19 C -0.081 4.081 20 C -0.184 4.184 21 C -0.019 4.019 22 N -0.250 5.250 23 C -0.011 4.011 24 N -0.253 5.253 25 C -0.024 4.024 26 C -0.125 4.125 27 C -0.159 4.159 28 C -0.164 4.164 29 C -0.134 4.134 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.240 0.760 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.208 0.792 40 H 0.234 0.766 41 H 0.198 0.802 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.335 -12.901 -2.799 15.102 hybrid contribution 0.805 1.465 0.201 1.683 sum -6.530 -11.436 -2.598 13.423 Atomic orbital electron populations 1.69724 1.06130 1.26046 1.59278 1.25345 0.96294 1.00346 1.03650 0.85353 0.77318 0.79967 0.77929 1.20967 1.22384 1.20644 1.19562 0.91441 0.85120 1.41304 0.90922 1.42150 1.05150 1.00049 1.87411 1.21280 0.94926 0.84745 0.93824 0.92084 1.24208 0.98179 1.00060 0.99615 1.21384 0.83523 0.95879 0.94357 0.88629 1.45893 1.21060 1.27431 1.40849 1.20998 0.85446 0.84867 0.78196 1.90646 1.77474 1.25750 1.51915 1.21660 0.93365 1.00262 1.01893 1.20078 0.90893 0.98113 0.99005 1.21686 0.98204 0.99725 0.98809 1.23635 0.86893 0.95365 0.95973 1.68499 1.30901 1.08523 1.17042 1.25488 0.97159 0.91349 0.87077 1.68484 1.00641 1.27410 1.28777 1.23560 0.96482 0.89212 0.93177 1.23377 0.98480 0.97745 0.92906 1.22486 0.98511 0.97724 0.97201 1.22792 0.97241 0.95582 1.00751 1.22524 0.97085 0.96582 0.97224 0.94027 0.79078 0.88124 0.93851 0.75984 0.87184 0.88678 0.89849 0.88820 0.79190 0.76587 0.80234 0.92715 0.91300 0.90316 0.89960 0.88998 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.43 13.06 21.65 0.28 -54.15 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.96 44.36 29.55 68.60 2.03 46.38 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -12.65 9.97 84.03 0.84 -11.81 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.71 -32.38 4.98 -321.56 -1.60 -33.98 16 10 C 0.16 5.96 4.36 45.28 0.20 6.16 16 11 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 12 C -0.18 -6.00 7.69 31.23 0.24 -5.76 16 13 C 0.15 4.75 4.12 45.28 0.19 4.93 16 14 H 0.10 2.90 7.46 -2.38 -0.02 2.88 16 15 N -0.70 -22.05 4.69 -441.17 -2.07 -24.12 16 16 C 0.52 15.23 7.83 87.65 0.69 15.92 16 17 O -0.58 -19.62 15.58 -3.06 -0.05 -19.67 16 18 C -0.13 -2.98 5.68 29.85 0.17 -2.81 16 19 C -0.04 -0.80 4.68 29.85 0.14 -0.66 16 20 C -0.18 -3.44 5.17 -19.69 -0.10 -3.54 16 21 C 0.15 2.76 11.01 84.70 0.93 3.69 16 22 N -0.54 -11.60 10.44 -200.04 -2.09 -13.69 16 23 C 0.28 5.73 12.29 180.88 2.22 7.95 16 24 N -0.54 -12.51 10.44 -200.03 -2.09 -14.60 16 25 C 0.14 2.95 11.01 84.70 0.93 3.88 16 26 C -0.12 -3.58 0.78 -52.31 -0.04 -3.62 16 27 C -0.12 -3.51 7.27 30.89 0.22 -3.28 16 28 C -0.13 -2.77 8.08 31.23 0.25 -2.52 16 29 C -0.10 -2.17 7.84 30.89 0.24 -1.92 16 30 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.37 17.65 5.34 -92.71 -0.50 17.15 16 32 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.40 13.80 5.94 -92.71 -0.55 13.25 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 1.67 8.06 -2.38 -0.02 1.65 16 38 H 0.09 1.67 8.06 -2.39 -0.02 1.65 16 39 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.22 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 42 H 0.05 1.63 7.58 -2.39 -0.02 1.61 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -65.34 387.47 1.95 -63.39 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -0.06 Total: 46.78 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 7.59 Total: 3.66 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -7.56 Total: -140.54 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.34 1.95 -63.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203186274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.503 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.07 seconds