Wall clock time and date at job start Tue Mar 31 2020 05:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86806 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46842 * 300.00159 * 3 2 1 6 6 H 1.48498 * 109.46833 * 59.99925 * 3 2 1 7 7 C 1.38814 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.09002 * 113.66835 * 89.73491 * 13 12 10 15 15 N 1.46502 * 113.66027 * 220.70212 * 13 12 10 16 16 C 1.34775 * 119.99774 * 255.48954 * 15 13 12 17 17 O 1.21280 * 119.99770 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00040 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.47152 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47152 * 180.02562 * 19 18 16 21 21 C 1.38596 * 120.79594 * 269.71985 * 20 19 18 22 22 N 1.32338 * 119.10171 * 179.71559 * 21 20 19 23 23 C 1.31797 * 120.81591 * 0.57004 * 22 21 20 24 24 N 1.31804 * 121.75448 * 359.70545 * 23 22 21 25 25 C 1.32327 * 120.81844 * 359.97438 * 24 23 22 26 26 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 27 27 C 1.52911 * 121.13708 * 323.85381 * 26 10 9 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 10 29 29 C 1.52908 * 121.14322 * 215.29266 * 26 10 9 30 30 H 0.96997 * 120.00331 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 32 32 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 33 33 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 34 34 H 0.96995 * 120.00305 * 75.49593 * 15 13 12 35 35 H 1.08996 * 109.46921 * 300.00226 * 18 16 15 36 36 H 1.09000 * 109.47005 * 60.00368 * 18 16 15 37 37 H 1.09004 * 109.47381 * 299.99990 * 19 18 16 38 38 H 1.09002 * 109.47419 * 59.99730 * 19 18 16 39 39 H 1.07998 * 120.45106 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.12235 * 179.72504 * 23 22 21 41 41 H 1.07999 * 120.44756 * 180.02562 * 25 24 23 42 42 H 1.09001 * 113.66341 * 323.84544 * 27 26 10 43 43 H 1.08996 * 113.66624 * 94.90194 * 27 26 10 44 44 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 45 45 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 46 46 H 1.09003 * 113.66175 * 265.09643 * 29 26 10 47 47 H 1.09004 * 113.66268 * 36.05302 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0457 -3.5773 0.4536 12 6 2.0612 -4.3684 -1.3657 13 6 0.7680 -5.0740 -0.9190 14 1 -0.1397 -4.5284 -1.1771 15 7 0.7093 -6.4883 -1.2964 16 6 -0.0721 -6.8801 -2.3223 17 8 -0.7262 -6.0617 -2.9332 18 6 -0.1329 -8.3351 -2.7103 19 6 -1.0850 -8.5075 -3.8954 20 6 -1.1464 -9.9625 -4.2830 21 6 -0.2712 -10.4841 -5.2226 22 7 -0.3510 -11.7679 -5.5338 23 6 -1.2550 -12.5442 -4.9705 24 7 -2.1069 -12.0818 -4.0774 25 6 -2.0827 -10.8101 -3.7122 26 6 1.2380 -4.8390 0.5170 27 6 0.2356 -4.6664 1.6587 28 6 0.5255 -6.1347 2.0195 29 6 1.8901 -5.9587 1.3288 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 1.9204 -3.6932 -2.2098 33 1 2.9041 -5.0459 -1.5023 34 1 1.2327 -7.1428 -0.8080 35 1 0.8627 -8.6779 -2.9917 36 1 -0.4939 -8.9216 -1.8654 37 1 -2.0808 -8.1645 -3.6144 38 1 -0.7237 -7.9210 -4.7402 39 1 0.4692 -9.8525 -5.6909 40 1 -1.2987 -13.5870 -5.2480 41 1 -2.7833 -10.4377 -2.9795 42 1 0.5582 -3.9569 2.4207 43 1 -0.7861 -4.4924 1.3214 44 1 -0.1298 -6.8452 1.5156 45 1 0.5998 -6.3151 3.0919 46 1 2.1901 -6.8171 0.7277 47 1 2.6788 -5.6125 1.9968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203186276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:27 Heat of formation + Delta-G solvation = 60.401612 kcal Electronic energy + Delta-G solvation = -27522.476786 eV Core-core repulsion = 23706.816976 eV Total energy + Delta-G solvation = -3815.659810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.41286 -40.69030 -39.03815 -35.24152 -34.97799 -34.07232 -34.05396 -32.46811 -30.71844 -29.53475 -26.14430 -25.60541 -24.97548 -24.46471 -24.06653 -23.01004 -22.02677 -20.27822 -20.16649 -18.14420 -18.01392 -17.98650 -17.33473 -16.84690 -15.99141 -15.60397 -15.26571 -15.22421 -14.98277 -14.55248 -14.10838 -14.03428 -13.95602 -13.78890 -13.44330 -13.05434 -12.76187 -12.58673 -12.46819 -12.14688 -11.96297 -11.74406 -11.57123 -11.48052 -11.21156 -11.20012 -10.96433 -10.86914 -10.69882 -10.23021 -10.09068 -9.98823 -9.91885 -9.71456 -9.61458 -9.59653 -9.39393 -8.86319 -8.68953 -6.99664 -5.80335 -3.09767 0.47422 0.67578 2.67702 3.19880 3.41428 3.41589 3.47134 3.49499 3.77354 3.83566 4.20323 4.31612 4.42377 4.51190 4.62991 4.67099 4.82956 4.88188 4.89654 4.89798 5.09367 5.12204 5.23172 5.29757 5.33271 5.42319 5.59411 5.71071 5.71757 5.75409 5.86420 5.96366 5.98304 6.00258 6.00602 6.05679 6.21420 6.35422 6.44477 6.55070 6.59233 6.67255 6.71330 6.81599 7.05537 7.61872 7.67297 7.69031 8.30877 8.37918 9.49154 10.05861 10.40223 11.41795 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002222 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.118098 B =12600.004976 C =13273.469422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.185 3.815 11 H 0.066 0.934 12 C -0.183 4.183 13 C 0.153 3.847 14 H 0.114 0.886 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.537 6.537 18 C -0.136 4.136 19 C -0.058 4.058 20 C -0.183 4.183 21 C 0.150 3.850 22 N -0.519 5.519 23 C 0.284 3.716 24 N -0.519 5.519 25 C 0.150 3.850 26 C -0.126 4.126 27 C -0.114 4.114 28 C -0.141 4.141 29 C -0.110 4.110 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.195 0.805 41 H 0.169 0.831 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -24.093 -3.486 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.072 3.928 11 H 0.084 0.916 12 C -0.225 4.225 13 C 0.049 3.951 14 H 0.132 0.868 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.414 6.414 18 C -0.177 4.177 19 C -0.097 4.097 20 C -0.187 4.187 21 C -0.016 4.016 22 N -0.232 5.232 23 C -0.004 4.004 24 N -0.232 5.232 25 C -0.016 4.016 26 C -0.129 4.129 27 C -0.152 4.152 28 C -0.179 4.179 29 C -0.147 4.147 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.186 0.814 40 H 0.211 0.789 41 H 0.186 0.814 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.355 -24.289 -4.175 24.648 hybrid contribution 0.435 1.408 0.387 1.524 sum 0.079 -22.881 -3.787 23.192 Atomic orbital electron populations 1.69667 1.05110 1.25689 1.57203 1.24763 0.95517 0.97760 1.02701 0.86117 0.78787 0.84073 0.77180 1.20526 1.21840 1.21871 1.19289 0.91082 0.83857 1.43146 0.90973 1.42091 1.05765 0.99131 1.86922 1.20791 0.94601 0.85077 0.92323 0.91629 1.24299 0.95958 0.99701 1.02571 1.22266 0.99790 0.79773 0.93227 0.86835 1.46143 1.46546 1.10244 1.33794 1.20535 0.79319 0.90456 0.80310 1.90751 1.43480 1.54611 1.52530 1.21667 1.01889 0.94470 0.99633 1.20227 1.01517 0.89479 0.98463 1.21775 0.98482 0.99003 0.99444 1.23246 0.95270 0.91308 0.91767 1.68453 1.22566 1.05742 1.26425 1.24990 0.86327 1.00518 0.88560 1.68450 1.24898 1.15609 1.14238 1.23239 0.94724 0.88352 0.95281 1.23457 0.98403 0.98051 0.92960 1.22552 0.99077 0.95480 0.98055 1.22869 0.97095 0.98039 0.99884 1.22516 0.96986 0.97044 0.98202 0.93454 0.77922 0.90930 0.91370 0.76952 0.88912 0.88929 0.89274 0.89249 0.81425 0.78853 0.81436 0.89411 0.91754 0.90934 0.91944 0.92369 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -16.95 5.12 -52.99 -0.27 -17.22 16 10 C 0.19 3.50 4.35 -67.48 -0.29 3.20 16 11 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 12 C -0.18 -3.12 7.68 -25.75 -0.20 -3.32 16 13 C 0.15 2.40 4.00 -67.48 -0.27 2.13 16 14 H 0.11 2.20 7.54 -51.93 -0.39 1.80 16 15 N -0.72 -8.46 5.31 -53.37 -0.28 -8.75 16 16 C 0.51 6.23 7.83 -10.99 -0.09 6.14 16 17 O -0.54 -9.11 15.62 5.56 0.09 -9.03 16 18 C -0.14 -1.03 5.68 -27.88 -0.16 -1.19 16 19 C -0.06 -0.44 4.68 -27.88 -0.13 -0.58 16 20 C -0.18 -1.34 5.17 -104.36 -0.54 -1.88 16 21 C 0.15 1.16 11.01 -17.20 -0.19 0.97 16 22 N -0.52 -4.68 10.44 -14.58 -0.15 -4.83 16 23 C 0.28 2.33 12.29 -92.14 -1.13 1.20 16 24 N -0.52 -4.66 10.44 -14.58 -0.15 -4.81 16 25 C 0.15 1.15 11.01 -17.21 -0.19 0.96 16 26 C -0.13 -1.89 0.91 -154.71 -0.14 -2.03 16 27 C -0.11 -1.73 7.43 -26.28 -0.20 -1.93 16 28 C -0.14 -1.63 8.08 -25.75 -0.21 -1.84 16 29 C -0.11 -1.26 7.45 -26.28 -0.20 -1.46 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.39 10.05 7.74 -40.82 -0.32 9.74 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.56 6.68 -40.82 -0.27 3.29 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 38 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 39 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -33.24 390.12 -10.56 -43.80 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.19 Total: 11.58 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -4.17 Total: -6.74 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.13 Total: -62.61 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.24 -10.56 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203186276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.202 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds