Wall clock time and date at job start Tue Mar 31 2020 05:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86806 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46842 * 300.00159 * 3 2 1 6 6 H 1.48498 * 109.46833 * 59.99925 * 3 2 1 7 7 C 1.38814 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.09002 * 113.66835 * 89.73491 * 13 12 10 15 15 N 1.46502 * 113.66027 * 220.70212 * 13 12 10 16 16 C 1.34775 * 119.99774 * 255.48954 * 15 13 12 17 17 O 1.21280 * 119.99770 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00040 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.47152 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47152 * 180.02562 * 19 18 16 21 21 C 1.38596 * 120.79594 * 269.71985 * 20 19 18 22 22 N 1.32338 * 119.10171 * 179.71559 * 21 20 19 23 23 C 1.31797 * 120.81591 * 0.57004 * 22 21 20 24 24 N 1.31804 * 121.75448 * 359.70545 * 23 22 21 25 25 C 1.32327 * 120.81844 * 359.97438 * 24 23 22 26 26 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 27 27 C 1.52911 * 121.13708 * 323.85381 * 26 10 9 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 10 29 29 C 1.52908 * 121.14322 * 215.29266 * 26 10 9 30 30 H 0.96997 * 120.00331 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 32 32 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 33 33 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 34 34 H 0.96995 * 120.00305 * 75.49593 * 15 13 12 35 35 H 1.08996 * 109.46921 * 300.00226 * 18 16 15 36 36 H 1.09000 * 109.47005 * 60.00368 * 18 16 15 37 37 H 1.09004 * 109.47381 * 299.99990 * 19 18 16 38 38 H 1.09002 * 109.47419 * 59.99730 * 19 18 16 39 39 H 1.07998 * 120.45106 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.12235 * 179.72504 * 23 22 21 41 41 H 1.07999 * 120.44756 * 180.02562 * 25 24 23 42 42 H 1.09001 * 113.66341 * 323.84544 * 27 26 10 43 43 H 1.08996 * 113.66624 * 94.90194 * 27 26 10 44 44 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 45 45 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 46 46 H 1.09003 * 113.66175 * 265.09643 * 29 26 10 47 47 H 1.09004 * 113.66268 * 36.05302 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0457 -3.5773 0.4536 12 6 2.0612 -4.3684 -1.3657 13 6 0.7680 -5.0740 -0.9190 14 1 -0.1397 -4.5284 -1.1771 15 7 0.7093 -6.4883 -1.2964 16 6 -0.0721 -6.8801 -2.3223 17 8 -0.7262 -6.0617 -2.9332 18 6 -0.1329 -8.3351 -2.7103 19 6 -1.0850 -8.5075 -3.8954 20 6 -1.1464 -9.9625 -4.2830 21 6 -0.2712 -10.4841 -5.2226 22 7 -0.3510 -11.7679 -5.5338 23 6 -1.2550 -12.5442 -4.9705 24 7 -2.1069 -12.0818 -4.0774 25 6 -2.0827 -10.8101 -3.7122 26 6 1.2380 -4.8390 0.5170 27 6 0.2356 -4.6664 1.6587 28 6 0.5255 -6.1347 2.0195 29 6 1.8901 -5.9587 1.3288 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 1.9204 -3.6932 -2.2098 33 1 2.9041 -5.0459 -1.5023 34 1 1.2327 -7.1428 -0.8080 35 1 0.8627 -8.6779 -2.9917 36 1 -0.4939 -8.9216 -1.8654 37 1 -2.0808 -8.1645 -3.6144 38 1 -0.7237 -7.9210 -4.7402 39 1 0.4692 -9.8525 -5.6909 40 1 -1.2987 -13.5870 -5.2480 41 1 -2.7833 -10.4377 -2.9795 42 1 0.5582 -3.9569 2.4207 43 1 -0.7861 -4.4924 1.3214 44 1 -0.1298 -6.8452 1.5156 45 1 0.5998 -6.3151 3.0919 46 1 2.1901 -6.8171 0.7277 47 1 2.6788 -5.6125 1.9968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203186276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:24 Heat of formation + Delta-G solvation = 38.903544 kcal Electronic energy + Delta-G solvation = -27523.409013 eV Core-core repulsion = 23706.816976 eV Total energy + Delta-G solvation = -3816.592036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -42.04179 -41.86635 -40.11430 -36.56249 -35.79986 -35.43544 -34.65628 -34.07606 -31.78850 -31.00797 -27.05951 -26.74622 -25.97235 -25.53876 -25.33580 -24.37810 -22.87672 -21.46280 -21.27572 -19.50960 -19.03657 -18.57415 -18.52880 -17.92939 -17.26274 -16.81462 -16.49138 -16.11761 -16.01258 -15.72006 -15.37581 -15.12311 -14.59148 -14.55796 -14.49746 -14.42376 -14.07223 -13.89574 -13.34656 -13.28793 -13.21452 -13.07784 -12.95775 -12.81796 -12.52584 -12.13604 -12.11017 -11.97701 -11.82358 -11.80950 -11.77776 -11.34317 -11.22055 -10.97907 -10.77990 -10.64139 -10.30117 -10.18532 -9.87349 -8.98556 -7.95398 -5.23939 -0.09062 0.10799 1.45995 1.47079 1.56929 1.70853 2.24875 2.54260 2.81265 3.27355 3.30805 3.36425 3.43145 3.51123 3.63288 3.67799 3.80357 3.85427 3.93803 3.97475 4.06570 4.21246 4.22461 4.31356 4.36255 4.54581 4.61053 4.64651 4.68455 4.79079 4.80208 4.90456 4.97967 5.04600 5.12031 5.12982 5.14811 5.16429 5.25391 5.31555 5.43613 5.46652 5.52830 5.59702 5.78254 5.98945 6.26948 6.66776 7.10501 7.32127 7.37412 8.09620 8.31223 9.28157 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002222 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.118098 B =12600.004976 C =13273.469422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.716 5.716 10 C 0.163 3.837 11 H 0.069 0.931 12 C -0.172 4.172 13 C 0.165 3.835 14 H 0.068 0.932 15 N -0.701 5.701 16 C 0.505 3.495 17 O -0.591 6.591 18 C -0.122 4.122 19 C -0.052 4.052 20 C -0.177 4.177 21 C 0.145 3.855 22 N -0.539 5.539 23 C 0.277 3.723 24 N -0.538 5.538 25 C 0.145 3.855 26 C -0.115 4.115 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.094 4.094 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.415 0.585 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.186 0.814 40 H 0.216 0.784 41 H 0.186 0.814 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -27.227 -2.824 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.353 5.353 10 C 0.052 3.948 11 H 0.087 0.913 12 C -0.214 4.214 13 C 0.059 3.941 14 H 0.086 0.914 15 N -0.354 5.354 16 C 0.293 3.707 17 O -0.471 6.471 18 C -0.162 4.162 19 C -0.091 4.091 20 C -0.181 4.181 21 C -0.021 4.021 22 N -0.252 5.252 23 C -0.010 4.010 24 N -0.252 5.252 25 C -0.020 4.020 26 C -0.117 4.117 27 C -0.167 4.167 28 C -0.159 4.159 29 C -0.132 4.132 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.203 0.797 40 H 0.233 0.767 41 H 0.203 0.797 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.627 -27.505 -3.494 27.774 hybrid contribution -0.164 2.338 0.143 2.348 sum 1.463 -25.167 -3.351 25.431 Atomic orbital electron populations 1.69834 1.06705 1.25902 1.59641 1.25581 0.96344 1.01178 1.03917 0.85074 0.78373 0.79859 0.76461 1.18738 1.22490 1.22082 1.19701 0.91539 0.85036 1.40683 0.90277 1.42237 1.05248 1.00523 1.87313 1.21116 0.94979 0.84498 0.94189 0.91313 1.24160 0.98022 0.99513 0.99666 1.21653 0.97094 0.81700 0.93669 0.91427 1.45903 1.46804 1.08705 1.33950 1.21422 0.77903 0.92126 0.79237 1.90745 1.45564 1.56610 1.54226 1.21662 1.03456 0.90678 1.00400 1.20109 1.01134 0.89526 0.98307 1.21626 0.98529 0.98402 0.99523 1.23593 0.95595 0.91243 0.91632 1.68510 1.23232 1.06384 1.27070 1.25469 0.85879 1.01501 0.88150 1.68509 1.25453 1.16279 1.14939 1.23594 0.94890 0.88106 0.95422 1.23349 0.98165 0.97539 0.92669 1.22586 0.97833 0.98418 0.97906 1.22797 0.96999 0.94812 1.01298 1.22538 0.97001 0.96151 0.97466 0.94144 0.79635 0.94723 0.87920 0.74585 0.86252 0.86152 0.90182 0.90242 0.79731 0.76747 0.79668 0.91478 0.93973 0.89357 0.90225 0.88835 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.54 13.06 21.65 0.28 -60.25 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.20 9.98 84.04 0.84 -12.36 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.72 -36.10 5.12 -321.56 -1.65 -37.75 16 10 C 0.16 6.18 4.35 45.28 0.20 6.38 16 11 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 12 C -0.17 -5.82 7.68 31.23 0.24 -5.58 16 13 C 0.16 5.13 4.00 45.28 0.18 5.31 16 14 H 0.07 2.79 7.54 -2.39 -0.02 2.78 16 15 N -0.70 -14.86 5.31 -441.15 -2.34 -17.20 16 16 C 0.50 11.54 7.83 87.66 0.69 12.23 16 17 O -0.59 -20.41 15.62 -3.03 -0.05 -20.46 16 18 C -0.12 -1.43 5.68 29.85 0.17 -1.26 16 19 C -0.05 -0.70 4.68 29.85 0.14 -0.56 16 20 C -0.18 -2.21 5.17 -19.69 -0.10 -2.31 16 21 C 0.14 1.93 11.01 84.70 0.93 2.86 16 22 N -0.54 -8.75 10.44 -200.04 -2.09 -10.84 16 23 C 0.28 4.08 12.29 180.88 2.22 6.30 16 24 N -0.54 -8.71 10.44 -200.04 -2.09 -10.79 16 25 C 0.15 1.92 11.01 84.70 0.93 2.85 16 26 C -0.12 -3.33 0.91 -52.31 -0.05 -3.37 16 27 C -0.13 -3.94 7.43 30.89 0.23 -3.71 16 28 C -0.12 -2.40 8.08 31.23 0.25 -2.15 16 29 C -0.09 -1.78 7.45 30.88 0.23 -1.55 16 30 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.37 20.64 7.74 -92.71 -0.72 19.92 16 32 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.42 5.49 6.68 -92.71 -0.62 4.87 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.25 8.06 -2.38 -0.02 1.23 16 38 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 39 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.17 6.43 -2.39 -0.02 1.15 16 47 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.66 390.12 1.32 -76.34 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.35 Total: 33.28 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 7.57 Total: -0.98 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -7.88 Total: -136.84 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -77.66 1.32 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203186276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.241 kcal (2) G-P(sol) polarization free energy of solvation -77.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds