Wall clock time and date at job start Tue Mar 31 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47110 * 2 1 4 4 C 1.42908 * 113.99808 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46723 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47361 * 65.00281 * 5 4 3 7 7 C 1.42898 * 113.99989 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47334 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99732 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00405 * 180.02562 * 8 7 6 11 11 C 1.47155 * 120.97885 * 359.97176 * 10 8 7 12 12 C 1.53302 * 108.38419 * 230.55818 * 11 10 8 13 13 O 1.42960 * 109.22348 * 307.70032 * 12 11 10 14 14 C 1.42971 * 114.16768 * 62.58025 * 13 12 11 15 15 H 1.08996 * 109.54990 * 57.36444 * 14 13 12 16 16 C 1.52999 * 109.51012 * 177.49617 * 14 13 12 17 17 H 1.09002 * 109.46716 * 174.74635 * 16 14 13 18 18 C 1.52997 * 109.47317 * 54.74727 * 16 14 13 19 19 N 1.46500 * 109.46944 * 294.74286 * 16 14 13 20 20 C 1.36939 * 119.99792 * 204.99944 * 19 16 14 21 21 H 1.08001 * 119.99680 * 0.02562 * 20 19 16 22 22 C 1.38809 * 119.99850 * 179.97438 * 20 19 16 23 23 N 1.31613 * 120.00225 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00107 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46988 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47350 * 120.00090 * 24 22 20 27 27 H 1.48504 * 109.47178 * 240.00742 * 24 22 20 28 28 C 1.47151 * 120.98466 * 179.97438 * 10 8 7 29 29 H 1.09001 * 109.47695 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46861 * 299.99280 * 1 2 3 31 31 H 1.09000 * 109.47703 * 59.99435 * 1 2 3 32 32 H 1.09001 * 109.46668 * 240.00241 * 2 1 3 33 33 H 1.08992 * 109.47360 * 120.00602 * 2 1 3 34 34 H 1.08997 * 109.46744 * 60.00735 * 4 3 2 35 35 H 1.08998 * 109.47125 * 300.00210 * 4 3 2 36 36 H 1.08997 * 109.47516 * 304.99561 * 5 4 3 37 37 H 1.09010 * 109.46913 * 185.00065 * 5 4 3 38 38 H 1.09001 * 109.47017 * 59.99779 * 7 6 5 39 39 H 1.09002 * 109.47239 * 300.00060 * 7 6 5 40 40 H 1.09000 * 109.68291 * 350.28164 * 11 10 8 41 41 H 1.08998 * 109.67983 * 110.83961 * 11 10 8 42 42 H 1.08998 * 109.51018 * 67.62157 * 12 11 10 43 43 H 1.08998 * 109.51239 * 187.72327 * 12 11 10 44 44 H 1.09002 * 109.47153 * 299.99641 * 18 16 14 45 45 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 46 46 H 1.09004 * 109.47261 * 59.99813 * 18 16 14 47 47 H 0.96994 * 119.99975 * 25.00733 * 19 16 14 48 48 H 0.97005 * 120.00673 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.68013 * 9.71750 * 28 10 8 50 50 H 1.09003 * 109.71224 * 249.17871 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3987 3.5446 1.2217 7 6 3.7205 4.9331 1.3248 8 6 3.2273 5.4663 2.6452 9 8 2.6561 4.7299 3.4213 10 7 3.4201 6.7617 2.9633 11 6 4.1100 7.6743 2.0377 12 6 5.2147 8.4033 2.8112 13 8 4.6550 8.9945 3.9863 14 6 4.1089 8.0521 4.9124 15 1 4.8800 7.3394 5.2050 16 6 3.5983 8.7903 6.1514 17 1 3.0989 8.0842 6.8149 18 6 2.6094 9.8774 5.7260 19 7 4.7277 9.4050 6.8535 20 6 4.6398 9.6660 8.1949 21 1 3.7381 9.4183 8.7353 22 6 5.7101 10.2480 8.8603 23 7 6.8091 10.5493 8.2018 24 14 5.5906 10.6034 10.6902 25 1 4.2609 10.1730 11.1923 26 1 6.6553 9.8592 11.4096 27 1 5.7605 12.0601 10.9237 28 6 2.9471 7.3053 4.2463 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8332 0.9767 -0.8909 35 1 3.8340 0.9763 0.8891 36 1 3.3493 3.4418 -0.8412 37 1 4.9082 3.0254 -0.0899 38 1 3.2424 5.4782 0.5110 39 1 4.8011 5.0612 1.2625 40 1 4.5498 7.1040 1.2195 41 1 3.4002 8.3998 1.6403 42 1 5.9902 7.6920 3.0954 43 1 5.6472 9.1812 2.1819 44 1 3.1089 10.5835 5.0626 45 1 2.2454 10.4030 6.6088 46 1 1.7691 9.4200 5.2036 47 1 5.5376 9.6272 6.3682 48 1 7.5569 10.9564 8.6666 49 1 2.6167 6.4906 4.8907 50 1 2.1201 7.9936 4.0715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755447844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:30 Heat of formation + Delta-G solvation = -149.432483 kcal Electronic energy + Delta-G solvation = -28868.962329 eV Core-core repulsion = 24704.601759 eV Total energy + Delta-G solvation = -4164.360570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.43659 -38.93971 -38.32925 -37.26203 -35.52502 -34.53804 -32.55138 -32.21377 -30.53994 -29.90919 -28.64409 -28.11723 -26.42064 -24.57801 -23.46685 -23.11717 -22.93805 -22.27130 -19.69837 -19.36879 -17.76547 -17.35785 -17.33153 -16.93928 -16.43948 -16.25967 -15.94539 -15.67346 -15.26536 -15.06856 -14.89148 -14.44235 -14.37989 -13.93183 -13.75747 -13.38240 -13.30014 -12.99999 -12.87186 -12.68411 -12.49760 -12.33875 -12.19188 -11.97965 -11.80714 -11.61276 -11.34305 -11.29230 -11.12141 -10.84637 -10.71738 -10.53059 -10.24964 -10.06365 -10.00892 -9.94181 -9.82631 -9.72572 -9.62131 -8.88312 -8.50106 -6.91403 -5.71964 -3.00513 2.46479 2.50440 3.29851 3.46214 3.48938 3.52087 3.54110 3.95545 4.29787 4.58743 4.59903 4.69848 4.70797 4.72855 4.76195 4.84966 4.85639 4.89579 4.99961 5.01962 5.05174 5.06787 5.17952 5.28169 5.33976 5.41189 5.42151 5.58553 5.61052 5.67478 5.70173 5.80832 5.81642 6.00319 6.00500 6.21144 6.33755 6.48159 6.67161 6.69508 6.84665 6.88236 7.17644 7.23702 7.47066 7.74432 8.06627 8.46274 9.58288 10.15865 10.52559 11.50568 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.002031 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.708851 B =13785.487748 C =14239.943741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.046 3.954 8 C 0.516 3.484 9 O -0.516 6.516 10 N -0.614 5.614 11 C 0.071 3.929 12 C 0.046 3.954 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.184 3.816 17 H 0.060 0.940 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.084 3.916 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.035 0.965 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.100 0.900 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -15.917 -23.638 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.033 4.033 8 C 0.303 3.697 9 O -0.390 6.390 10 N -0.350 5.350 11 C -0.052 4.052 12 C -0.033 4.033 13 O -0.275 6.275 14 C 0.017 3.983 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.078 0.922 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.038 4.038 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.223 0.777 48 H 0.063 0.937 49 H 0.119 0.881 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.897 -16.078 -22.844 28.773 hybrid contribution 0.729 0.049 0.410 0.838 sum -6.168 -16.029 -22.434 28.253 Atomic orbital electron populations 1.21739 0.93665 1.02166 1.03347 1.22458 0.95821 0.83787 0.99893 1.87984 1.20338 1.26294 1.95373 1.22482 0.82456 0.95258 1.00973 1.22600 0.98446 0.92957 0.87483 1.88097 1.80719 1.20691 1.37703 1.22219 1.00363 0.84554 0.96206 1.20175 0.79915 0.81500 0.88148 1.90740 1.40973 1.56293 1.51024 1.48121 1.58634 1.08681 1.19605 1.22538 0.96319 0.93756 0.92616 1.22898 0.93976 0.98209 0.88172 1.88109 1.77197 1.32509 1.29699 1.22998 0.94027 0.91314 0.90003 0.91797 1.20202 0.90094 0.93452 0.88886 0.92236 1.22412 0.98269 1.00589 1.00946 1.42358 1.14249 1.72766 1.06690 1.19306 0.99396 1.33221 0.84946 0.91082 1.24736 0.96345 1.01932 0.97997 1.69686 1.04892 1.48461 1.34909 0.86131 0.77181 0.77545 0.85427 1.20546 1.21964 1.21928 1.22508 0.97769 0.99134 0.84384 0.91154 0.91558 0.91947 0.93632 0.93290 0.91711 0.92188 0.92190 0.91493 0.90253 0.90320 0.89490 0.90127 0.92831 0.87781 0.92434 0.92888 0.94641 0.77699 0.93651 0.88135 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.07 10.31 -40.08 -0.41 -4.49 16 4 C 0.07 0.52 6.32 37.16 0.23 0.76 16 5 C 0.06 0.50 6.32 37.16 0.23 0.73 16 6 O -0.35 -4.39 9.84 -59.73 -0.59 -4.98 16 7 C 0.05 0.47 4.79 36.00 0.17 0.64 16 8 C 0.52 7.31 7.79 -10.99 -0.09 7.23 16 9 O -0.52 -9.69 15.97 -14.36 -0.23 -9.92 16 10 N -0.61 -7.95 3.02 -172.25 -0.52 -8.47 16 11 C 0.07 0.67 6.54 -3.53 -0.02 0.65 16 12 C 0.05 0.53 6.99 37.31 0.26 0.79 16 13 O -0.36 -5.93 9.24 -35.23 -0.33 -6.26 16 14 C 0.08 1.31 2.61 -26.56 -0.07 1.24 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.18 3.73 2.77 -67.93 -0.19 3.54 16 17 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 18 C -0.16 -3.00 9.06 37.16 0.34 -2.67 16 19 N -0.72 -18.35 5.10 -53.43 -0.27 -18.62 16 20 C -0.24 -6.67 9.93 -15.06 -0.15 -6.81 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 24 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 C 0.08 1.26 5.83 -3.51 -0.02 1.24 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 39 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 40 H 0.09 0.53 6.05 -51.93 -0.31 0.22 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.03 0.55 6.42 -51.93 -0.33 0.21 16 47 H 0.39 10.68 7.59 -40.82 -0.31 10.37 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.10 1.62 7.08 -51.93 -0.37 1.25 16 50 H 0.08 1.16 6.27 -51.93 -0.33 0.83 16 LS Contribution 403.64 15.07 6.08 6.08 Total: -1.00 -36.52 403.64 -8.07 -44.59 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.74 Total: 5.34 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 1.24 Total: 6.82 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.07 Total: -54.84 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.56 Total: -25.65 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.52 -8.07 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.847 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds