Wall clock time and date at job start Tue Mar 31 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48507 * 109.46984 * 269.99656 * 3 2 1 5 5 H 1.48497 * 109.47632 * 29.99835 * 3 2 1 6 6 H 1.48510 * 109.47155 * 150.00200 * 3 2 1 7 7 C 1.39902 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00233 * 188.07771 * 7 2 1 9 9 C 1.41155 * 119.99817 * 8.07014 * 7 2 1 10 10 C 1.40868 * 120.16138 * 211.16443 * 9 7 2 11 11 C 1.36379 * 119.82743 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16534 * 0.02562 * 11 10 9 13 13 N 1.39243 * 119.83121 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99953 * 211.64602 * 13 12 11 15 15 O 1.21280 * 120.00069 * 7.57696 * 14 13 12 16 16 C 1.50700 * 119.99674 * 187.58555 * 14 13 12 17 17 C 1.52998 * 109.47014 * 176.27571 * 16 14 13 18 18 C 1.53006 * 110.01801 * 65.05116 * 17 16 14 19 19 C 1.50697 * 109.47257 * 64.90900 * 18 17 16 20 20 O 1.20834 * 119.99602 * 357.58473 * 19 18 17 21 21 O 1.34221 * 120.00319 * 177.58590 * 19 18 17 22 22 C 1.54263 * 110.07707 * 186.46919 * 17 16 14 23 23 C 1.54891 * 104.19541 * 95.69603 * 22 17 16 24 24 C 1.54890 * 102.74768 * 37.94706 * 23 22 17 25 25 C 1.53878 * 110.03463 * 303.66275 * 17 16 14 26 26 C 1.39476 * 120.33403 * 0.25598 * 12 11 10 27 27 C 1.36374 * 120.16983 * 359.43702 * 26 12 11 28 28 H 0.97004 * 119.99951 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.09044 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.91401 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99736 * 31.64049 * 13 12 11 32 32 H 1.08998 * 109.47502 * 56.27870 * 16 14 13 33 33 H 1.08997 * 109.47112 * 296.27350 * 16 14 13 34 34 H 1.09003 * 109.46983 * 304.91299 * 18 17 16 35 35 H 1.08997 * 109.47231 * 184.91219 * 18 17 16 36 36 H 0.96700 * 116.99929 * 180.02562 * 21 19 18 37 37 H 1.08997 * 110.48770 * 214.38125 * 22 17 16 38 38 H 1.09000 * 110.48604 * 337.01953 * 22 17 16 39 39 H 1.09001 * 110.75628 * 279.62969 * 23 22 17 40 40 H 1.09004 * 110.75245 * 156.25888 * 23 22 17 41 41 H 1.08996 * 110.48359 * 203.37801 * 24 23 22 42 42 H 1.08995 * 110.48524 * 80.73671 * 24 23 22 43 43 H 1.09004 * 110.02772 * 359.95043 * 25 17 16 44 44 H 1.08998 * 110.03427 * 121.37975 * 25 17 16 45 45 H 1.08003 * 119.91183 * 179.72902 * 26 12 11 46 46 H 1.08001 * 120.08765 * 180.25501 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4002 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0802 -1.2163 0.1309 9 6 1.3129 -2.4279 -0.1727 10 6 1.7857 -3.6060 0.4379 11 6 1.1088 -4.7775 0.2666 12 6 -0.0485 -4.8110 -0.5113 13 7 -0.7338 -6.0111 -0.6820 14 6 -1.3981 -6.2503 -1.8300 15 8 -1.2878 -5.4859 -2.7651 16 6 -2.2783 -7.4675 -1.9515 17 6 -2.9830 -7.4537 -3.3094 18 6 -1.9552 -7.5929 -4.4343 19 6 -1.2946 -8.9445 -4.3468 20 8 -1.5816 -9.7001 -3.4486 21 8 -0.3875 -9.3090 -5.2665 22 6 -4.0086 -8.6035 -3.3855 23 6 -5.3511 -7.9421 -2.9867 24 6 -5.2554 -6.5464 -3.6517 25 6 -3.7757 -6.1457 -3.4787 26 6 -0.5194 -3.6498 -1.1238 27 6 0.1432 -2.4697 -0.9565 28 1 -0.4850 0.8401 -0.0004 29 1 2.6819 -3.5816 1.0402 30 1 1.4698 -5.6815 0.7345 31 1 -0.7329 -6.6749 0.0253 32 1 -3.0230 -7.4584 -1.1557 33 1 -1.6682 -8.3668 -1.8679 34 1 -1.2005 -6.8126 -4.3355 35 1 -2.4554 -7.4946 -5.3978 36 1 0.0088 -10.1856 -5.1689 37 1 -4.0643 -8.9985 -4.3999 38 1 -3.7486 -9.3938 -2.6813 39 1 -5.4293 -7.8493 -1.9035 40 1 -6.1935 -8.5047 -3.3892 41 1 -5.9053 -5.8355 -3.1416 42 1 -5.5125 -6.6092 -4.7090 43 1 -3.6591 -5.5212 -2.5930 44 1 -3.4282 -5.6102 -4.3622 45 1 -1.4138 -3.6845 -1.7282 46 1 -0.2250 -1.5705 -1.4281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000148573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:27 Heat of formation + Delta-G solvation = -123.351150 kcal Electronic energy + Delta-G solvation = -28656.430599 eV Core-core repulsion = 24702.791258 eV Total energy + Delta-G solvation = -3953.639341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.04729 -39.68278 -38.35584 -37.02046 -36.13584 -34.43802 -32.92305 -32.33720 -29.74105 -29.42976 -28.71805 -28.38705 -25.81476 -24.50742 -21.89501 -21.54868 -21.06604 -20.79694 -19.57643 -18.73005 -18.08766 -17.29747 -17.11205 -16.28061 -16.15220 -16.04782 -15.25712 -15.20172 -14.97197 -14.68027 -13.95893 -13.69413 -13.51045 -13.26681 -13.22009 -12.87008 -12.69626 -12.31444 -12.01598 -11.77197 -11.73914 -11.55731 -11.43006 -11.37972 -11.14904 -11.09903 -11.07375 -10.87574 -10.77821 -10.68788 -10.59949 -10.48543 -10.26717 -9.84062 -9.58452 -9.38679 -9.08894 -8.78901 -7.52935 -6.89372 -6.65740 -4.30878 2.13707 2.56372 2.99493 3.01901 3.08479 3.10873 3.13171 3.41227 3.77047 3.96986 4.43193 4.49436 4.64623 4.69696 5.03300 5.08960 5.21747 5.28112 5.35650 5.45154 5.46977 5.59423 5.63502 5.67293 5.69398 5.86766 5.91693 5.94648 6.07201 6.11233 6.14085 6.20247 6.35895 6.37452 6.43144 6.49278 6.80514 6.98657 7.04528 7.17782 7.29550 7.60087 7.68134 7.81635 7.96106 8.07323 8.21694 8.33520 8.64453 8.78468 8.91485 9.01163 10.27248 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002784 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.345563 B =10053.743596 C =10675.333127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.103 3.897 10 C -0.208 4.208 11 C -0.113 4.113 12 C 0.005 3.995 13 N -0.654 5.654 14 C 0.497 3.503 15 O -0.528 6.528 16 C -0.139 4.139 17 C -0.025 4.025 18 C -0.115 4.115 19 C 0.479 3.521 20 O -0.517 6.517 21 O -0.519 6.519 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.092 4.092 27 C -0.143 4.143 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.394 0.606 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.406 0.594 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -15.316 -6.644 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.101 3.899 10 C -0.228 4.228 11 C -0.133 4.133 12 C -0.087 4.087 13 N -0.297 5.297 14 C 0.284 3.716 15 O -0.406 6.406 16 C -0.179 4.179 17 C -0.026 4.026 18 C -0.152 4.152 19 C 0.323 3.677 20 O -0.406 6.406 21 O -0.331 6.331 22 C -0.148 4.148 23 C -0.165 4.165 24 C -0.166 4.166 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.163 4.163 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.427 -14.411 -7.099 18.141 hybrid contribution 0.708 -0.190 0.593 0.943 sum -7.719 -14.601 -6.506 17.751 Atomic orbital electron populations 1.69803 1.07341 1.28928 1.36979 1.25878 0.94871 1.01145 0.92549 0.86256 0.80254 0.80626 0.79189 1.19399 1.20354 1.18753 1.19515 0.95305 0.90395 1.44009 0.90583 1.17676 0.91887 0.92087 0.88272 1.20621 1.02593 0.93537 1.06034 1.20043 0.94389 0.97261 1.01594 1.17248 0.96839 0.84745 1.09877 1.43099 1.50940 1.18583 1.17037 1.20653 0.81128 0.87328 0.82444 1.90629 1.63744 1.48686 1.37522 1.21992 0.99440 0.97816 0.98674 1.20697 0.93600 0.96203 0.92085 1.21851 1.00307 0.91830 1.01237 1.23822 0.76049 0.89695 0.78179 1.90641 1.61591 1.54085 1.34233 1.84585 1.54337 1.40908 1.53226 1.22500 0.93545 0.97044 1.01672 1.22535 0.97247 0.96145 1.00533 1.22436 0.97049 0.96715 1.00411 1.22181 0.92959 0.95571 1.03398 1.20444 0.99472 0.91452 0.99788 1.21040 0.98344 0.96233 1.00711 0.91027 0.88626 0.89244 0.77268 0.89006 0.87764 0.85092 0.87920 0.73606 0.92061 0.90365 0.91525 0.91881 0.91768 0.91905 0.91043 0.90889 0.87805 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.04 10.86 55.55 0.60 -20.44 16 2 C 0.07 1.82 5.28 -17.34 -0.09 1.72 16 3 Si 0.91 18.94 29.57 -169.99 -5.03 13.91 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.31 9.04 -37.85 -0.34 -12.65 16 8 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 9 C 0.10 2.76 5.53 -106.80 -0.59 2.17 16 10 C -0.21 -5.04 9.74 -39.26 -0.38 -5.42 16 11 C -0.11 -2.47 9.89 -39.79 -0.39 -2.86 16 12 C 0.01 0.11 6.32 -83.57 -0.53 -0.41 16 13 N -0.65 -11.33 5.31 -9.74 -0.05 -11.38 16 14 C 0.50 8.17 6.53 -10.99 -0.07 8.10 16 15 O -0.53 -10.15 10.12 5.56 0.06 -10.09 16 16 C -0.14 -1.74 4.34 -27.88 -0.12 -1.86 16 17 C -0.03 -0.29 0.33 -153.39 -0.05 -0.34 16 18 C -0.12 -1.34 4.31 -27.88 -0.12 -1.46 16 19 C 0.48 5.50 7.69 36.00 0.28 5.78 16 20 O -0.52 -6.60 12.97 -18.76 -0.24 -6.84 16 21 O -0.52 -5.01 13.42 -39.23 -0.53 -5.54 16 22 C -0.11 -1.11 4.48 -25.07 -0.11 -1.22 16 23 C -0.13 -1.16 6.91 -24.74 -0.17 -1.33 16 24 C -0.13 -1.26 6.83 -25.07 -0.17 -1.44 16 25 C -0.10 -1.25 4.68 -25.61 -0.12 -1.37 16 26 C -0.09 -2.23 8.58 -39.79 -0.34 -2.57 16 27 C -0.14 -3.80 8.59 -39.26 -0.34 -4.14 16 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.39 5.51 8.81 -40.82 -0.36 5.15 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.31 5.84 -51.93 -0.30 1.00 16 34 H 0.13 1.85 5.80 -51.93 -0.30 1.55 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.41 2.14 9.10 45.56 0.41 2.55 16 37 H 0.06 0.59 7.77 -51.93 -0.40 0.19 16 38 H 0.08 0.84 6.99 -51.93 -0.36 0.48 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.01 6.71 -51.93 -0.35 0.67 16 44 H 0.07 0.92 7.67 -51.93 -0.40 0.53 16 45 H 0.10 2.49 6.32 -52.48 -0.33 2.16 16 46 H 0.12 3.35 6.30 -52.49 -0.33 3.02 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -30.62 365.06 -9.01 -39.63 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.65 Total: 14.55 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.67 Total: -19.30 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.55 Total: -31.82 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.71 Total: -22.47 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.62 -9.01 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.721 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds