Wall clock time and date at job start Tue Mar 31 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48507 * 109.46984 * 269.99656 * 3 2 1 5 5 H 1.48497 * 109.47632 * 29.99835 * 3 2 1 6 6 H 1.48510 * 109.47155 * 150.00200 * 3 2 1 7 7 C 1.39902 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00233 * 188.07771 * 7 2 1 9 9 C 1.41155 * 119.99817 * 8.07014 * 7 2 1 10 10 C 1.40868 * 120.16138 * 211.16443 * 9 7 2 11 11 C 1.36379 * 119.82743 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16534 * 0.02562 * 11 10 9 13 13 N 1.39243 * 119.83121 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99953 * 211.64602 * 13 12 11 15 15 O 1.21280 * 120.00069 * 7.57696 * 14 13 12 16 16 C 1.50700 * 119.99674 * 187.58555 * 14 13 12 17 17 C 1.52998 * 109.47014 * 176.27571 * 16 14 13 18 18 C 1.53006 * 110.01801 * 65.05116 * 17 16 14 19 19 C 1.50697 * 109.47257 * 64.90900 * 18 17 16 20 20 O 1.20834 * 119.99602 * 357.58473 * 19 18 17 21 21 O 1.34221 * 120.00319 * 177.58590 * 19 18 17 22 22 C 1.54263 * 110.07707 * 186.46919 * 17 16 14 23 23 C 1.54891 * 104.19541 * 95.69603 * 22 17 16 24 24 C 1.54890 * 102.74768 * 37.94706 * 23 22 17 25 25 C 1.53878 * 110.03463 * 303.66275 * 17 16 14 26 26 C 1.39476 * 120.33403 * 0.25598 * 12 11 10 27 27 C 1.36374 * 120.16983 * 359.43702 * 26 12 11 28 28 H 0.97004 * 119.99951 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.09044 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.91401 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99736 * 31.64049 * 13 12 11 32 32 H 1.08998 * 109.47502 * 56.27870 * 16 14 13 33 33 H 1.08997 * 109.47112 * 296.27350 * 16 14 13 34 34 H 1.09003 * 109.46983 * 304.91299 * 18 17 16 35 35 H 1.08997 * 109.47231 * 184.91219 * 18 17 16 36 36 H 0.96700 * 116.99929 * 180.02562 * 21 19 18 37 37 H 1.08997 * 110.48770 * 214.38125 * 22 17 16 38 38 H 1.09000 * 110.48604 * 337.01953 * 22 17 16 39 39 H 1.09001 * 110.75628 * 279.62969 * 23 22 17 40 40 H 1.09004 * 110.75245 * 156.25888 * 23 22 17 41 41 H 1.08996 * 110.48359 * 203.37801 * 24 23 22 42 42 H 1.08995 * 110.48524 * 80.73671 * 24 23 22 43 43 H 1.09004 * 110.02772 * 359.95043 * 25 17 16 44 44 H 1.08998 * 110.03427 * 121.37975 * 25 17 16 45 45 H 1.08003 * 119.91183 * 179.72902 * 26 12 11 46 46 H 1.08001 * 120.08765 * 180.25501 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4002 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0802 -1.2163 0.1309 9 6 1.3129 -2.4279 -0.1727 10 6 1.7857 -3.6060 0.4379 11 6 1.1088 -4.7775 0.2666 12 6 -0.0485 -4.8110 -0.5113 13 7 -0.7338 -6.0111 -0.6820 14 6 -1.3981 -6.2503 -1.8300 15 8 -1.2878 -5.4859 -2.7651 16 6 -2.2783 -7.4675 -1.9515 17 6 -2.9830 -7.4537 -3.3094 18 6 -1.9552 -7.5929 -4.4343 19 6 -1.2946 -8.9445 -4.3468 20 8 -1.5816 -9.7001 -3.4486 21 8 -0.3875 -9.3090 -5.2665 22 6 -4.0086 -8.6035 -3.3855 23 6 -5.3511 -7.9421 -2.9867 24 6 -5.2554 -6.5464 -3.6517 25 6 -3.7757 -6.1457 -3.4787 26 6 -0.5194 -3.6498 -1.1238 27 6 0.1432 -2.4697 -0.9565 28 1 -0.4850 0.8401 -0.0004 29 1 2.6819 -3.5816 1.0402 30 1 1.4698 -5.6815 0.7345 31 1 -0.7329 -6.6749 0.0253 32 1 -3.0230 -7.4584 -1.1557 33 1 -1.6682 -8.3668 -1.8679 34 1 -1.2005 -6.8126 -4.3355 35 1 -2.4554 -7.4946 -5.3978 36 1 0.0088 -10.1856 -5.1689 37 1 -4.0643 -8.9985 -4.3999 38 1 -3.7486 -9.3938 -2.6813 39 1 -5.4293 -7.8493 -1.9035 40 1 -6.1935 -8.5047 -3.3892 41 1 -5.9053 -5.8355 -3.1416 42 1 -5.5125 -6.6092 -4.7090 43 1 -3.6591 -5.5212 -2.5930 44 1 -3.4282 -5.6102 -4.3622 45 1 -1.4138 -3.6845 -1.7282 46 1 -0.2250 -1.5705 -1.4281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000148573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:25 Heat of formation + Delta-G solvation = -141.097019 kcal Electronic energy + Delta-G solvation = -28657.200117 eV Core-core repulsion = 24702.791258 eV Total energy + Delta-G solvation = -3954.408859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.07735 -40.92112 -39.60353 -38.55224 -36.97885 -36.12715 -34.67751 -33.27328 -31.47606 -31.13445 -29.76248 -29.57139 -27.10164 -25.99858 -23.33536 -22.84843 -22.70179 -21.59699 -21.12178 -19.76202 -19.22040 -18.95007 -18.40483 -17.74115 -17.28231 -17.04453 -16.90013 -16.21400 -16.00030 -15.80835 -15.73302 -15.02346 -14.84253 -14.56518 -14.33658 -14.10543 -13.93202 -13.92777 -13.64434 -13.29918 -13.25124 -12.83331 -12.81201 -12.66389 -12.43887 -12.38420 -12.25034 -12.00938 -11.72868 -11.64577 -11.61221 -11.56583 -11.42967 -11.34232 -11.18911 -11.15861 -10.76769 -10.36177 -9.44757 -8.74298 -8.53044 -6.28947 0.81734 1.13346 1.24776 1.38724 1.45299 1.52278 1.88163 2.21100 2.23071 2.41608 2.80408 3.53497 3.57759 3.72483 3.74433 4.06441 4.19456 4.30645 4.38335 4.42142 4.47433 4.51541 4.53861 4.59791 4.69094 4.74822 4.84585 4.97844 5.00164 5.06535 5.11269 5.15407 5.18069 5.22546 5.28631 5.32312 5.38615 5.46041 5.49599 5.55036 5.68996 5.70295 5.86762 6.09046 6.13317 6.36048 6.69416 6.77282 6.95822 7.01850 7.05469 7.44813 8.40942 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002784 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.345563 B =10053.743596 C =10675.333127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.070 3.930 10 C -0.216 4.216 11 C -0.111 4.111 12 C 0.023 3.977 13 N -0.652 5.652 14 C 0.496 3.504 15 O -0.556 6.556 16 C -0.127 4.127 17 C -0.025 4.025 18 C -0.116 4.116 19 C 0.483 3.517 20 O -0.530 6.530 21 O -0.520 6.520 22 C -0.102 4.102 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.103 4.103 26 C -0.103 4.103 27 C -0.166 4.166 28 H 0.284 0.716 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.414 0.586 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.425 0.575 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -17.462 -6.563 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.067 3.933 10 C -0.236 4.236 11 C -0.131 4.131 12 C -0.071 4.071 13 N -0.296 5.296 14 C 0.285 3.715 15 O -0.435 6.435 16 C -0.166 4.166 17 C -0.026 4.026 18 C -0.153 4.153 19 C 0.328 3.672 20 O -0.420 6.420 21 O -0.334 6.334 22 C -0.139 4.139 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.186 4.186 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.251 0.749 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.287 0.713 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.117 0.883 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.843 -16.619 -7.017 20.090 hybrid contribution 0.800 0.302 0.487 0.984 sum -8.043 -16.317 -6.529 19.328 Atomic orbital electron populations 1.69887 1.08840 1.30079 1.37825 1.26758 0.95652 1.04480 0.91573 0.85149 0.78956 0.75928 0.79305 1.18986 1.19379 1.18048 1.19769 0.95518 0.91500 1.46108 0.90540 1.17995 0.92509 0.93447 0.89337 1.20876 1.03220 0.93649 1.05843 1.20395 0.93676 0.98015 1.00984 1.17317 0.96484 0.85612 1.07700 1.43079 1.50744 1.17531 1.18291 1.21429 0.80498 0.88021 0.81508 1.90637 1.64265 1.49987 1.38563 1.21989 0.99083 0.95481 1.00073 1.20726 0.93863 0.96554 0.91449 1.21787 0.99846 0.91398 1.02293 1.23650 0.76108 0.89358 0.78133 1.90632 1.62149 1.54470 1.34749 1.84538 1.53818 1.42488 1.52524 1.22425 0.93238 0.96120 1.02120 1.22532 0.97334 0.95426 1.00676 1.22419 0.95148 0.97321 1.01341 1.22123 0.94948 0.95510 1.01524 1.20478 0.99423 0.91988 1.00449 1.20918 0.99462 0.96263 1.01950 0.90524 0.87386 0.85153 0.74905 0.87020 0.86995 0.87758 0.86243 0.71317 0.91346 0.90528 0.91341 0.90151 0.91753 0.90768 0.93684 0.92196 0.88271 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.74 10.86 21.82 0.24 -45.50 16 2 C 0.03 1.46 5.28 85.24 0.45 1.91 16 3 Si 0.99 39.58 29.57 68.60 2.03 41.61 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.50 -27.54 9.04 23.39 0.21 -27.33 16 8 H 0.08 4.04 7.86 -2.91 -0.02 4.01 16 9 C 0.07 3.85 5.53 -21.28 -0.12 3.73 16 10 C -0.22 -10.50 9.74 22.48 0.22 -10.29 16 11 C -0.11 -4.70 9.89 22.14 0.22 -4.48 16 12 C 0.02 0.98 6.32 38.56 0.24 1.22 16 13 N -0.65 -21.57 5.31 -303.11 -1.61 -23.18 16 14 C 0.50 15.92 6.53 87.66 0.57 16.49 16 15 O -0.56 -21.67 10.12 -3.03 -0.03 -21.70 16 16 C -0.13 -2.93 4.34 29.85 0.13 -2.80 16 17 C -0.03 -0.54 0.33 -51.46 -0.02 -0.56 16 18 C -0.12 -2.57 4.31 29.85 0.13 -2.44 16 19 C 0.48 10.18 7.69 71.23 0.55 10.73 16 20 O -0.53 -12.26 12.97 21.94 0.28 -11.97 16 21 O -0.52 -8.99 13.42 -51.33 -0.69 -9.68 16 22 C -0.10 -1.77 4.48 31.67 0.14 -1.63 16 23 C -0.12 -1.89 6.91 31.89 0.22 -1.67 16 24 C -0.12 -2.25 6.83 31.67 0.22 -2.03 16 25 C -0.10 -2.46 4.68 31.32 0.15 -2.31 16 26 C -0.10 -5.19 8.58 22.13 0.19 -5.00 16 27 C -0.17 -9.25 8.59 22.48 0.19 -9.06 16 28 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 29 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.41 10.44 8.81 -92.71 -0.82 9.62 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 2.51 5.84 -2.39 -0.01 2.50 16 34 H 0.10 2.96 5.80 -2.39 -0.01 2.94 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.43 3.47 9.10 -74.06 -0.67 2.80 16 37 H 0.07 1.12 7.77 -2.39 -0.02 1.10 16 38 H 0.08 1.41 6.99 -2.39 -0.02 1.39 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.29 6.71 -2.38 -0.02 1.28 16 44 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 45 H 0.10 4.98 6.32 -2.91 -0.02 4.96 16 46 H 0.10 5.77 6.30 -2.91 -0.02 5.75 16 Total: -1.00 -68.76 365.06 3.46 -65.31 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.46 Total: 40.63 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 3.69 Total: -35.51 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.37 Total: -68.68 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.44 Total: -43.35 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -68.76 3.46 -65.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.788 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds