Wall clock time and date at job start Tue Mar 31 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.46675 * 2 1 4 4 C 1.35902 * 116.99872 * 180.02562 * 3 2 1 5 5 C 1.38737 * 120.05697 * 359.94534 * 4 3 2 6 6 C 1.38141 * 119.94393 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.05727 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.94426 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.09984 * 348.19889 * 8 7 6 10 10 C 1.51108 * 110.12196 * 109.81403 * 8 7 6 11 11 C 1.40974 * 126.69398 * 299.13698 * 10 8 7 12 12 C 1.50699 * 119.99424 * 355.79352 * 11 10 8 13 13 O 1.21451 * 120.00288 * 175.80106 * 11 10 8 14 14 C 1.36154 * 106.62188 * 119.16544 * 10 8 7 15 15 O 1.35256 * 125.44305 * 180.02562 * 14 10 8 16 16 C 1.47295 * 109.11927 * 0.02562 * 14 10 8 17 17 O 1.21642 * 124.95074 * 179.97438 * 16 14 10 18 18 N 1.34508 * 110.09631 * 359.97438 * 16 14 10 19 19 C 1.35999 * 125.98654 * 180.02562 * 18 16 14 20 20 H 1.08004 * 119.99570 * 18.60189 * 19 18 16 21 21 C 1.39685 * 119.99966 * 198.59458 * 19 18 16 22 22 N 1.30953 * 120.00133 * 9.31358 * 21 19 18 23 23 Si 1.86799 * 120.00005 * 189.30717 * 21 19 18 24 24 H 1.48497 * 109.46986 * 90.00718 * 23 21 19 25 25 H 1.48503 * 109.47297 * 210.00434 * 23 21 19 26 26 H 1.48501 * 109.47500 * 330.00379 * 23 21 19 27 27 C 1.38265 * 120.11245 * 0.02562 * 7 6 5 28 28 C 1.38140 * 120.05545 * 359.97404 * 27 7 6 29 29 H 1.09002 * 109.47161 * 60.00493 * 1 2 3 30 30 H 1.09006 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47674 * 300.00169 * 1 2 3 32 32 H 1.09003 * 109.47546 * 240.00271 * 2 1 3 33 33 H 1.09002 * 109.47161 * 119.99507 * 2 1 3 34 34 H 1.08006 * 120.02151 * 0.05034 * 5 4 3 35 35 H 1.08002 * 119.96922 * 180.27784 * 6 5 4 36 36 H 1.09000 * 109.47361 * 354.18066 * 12 11 10 37 37 H 1.09010 * 109.47081 * 114.17423 * 12 11 10 38 38 H 1.09001 * 109.47561 * 234.17074 * 12 11 10 39 39 H 0.96696 * 114.00037 * 180.02562 * 15 14 10 40 40 H 0.96995 * 120.00337 * 179.97438 * 22 21 19 41 41 H 1.08002 * 119.97377 * 179.97438 * 27 7 6 42 42 H 1.07997 * 120.02771 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 4.1998 0.4261 0.0001 6 6 5.5689 0.6099 0.0001 7 6 6.0961 1.8880 0.0000 8 6 7.5901 2.0856 0.0005 9 1 8.0927 1.1414 0.2103 10 6 8.0430 2.6302 -1.3343 11 6 7.8966 2.0087 -2.5911 12 6 7.3161 0.6210 -2.6823 13 8 8.2385 2.5915 -3.6003 14 6 8.6205 3.8380 -1.0864 15 8 9.1579 4.6566 -2.0194 16 6 8.5667 4.1108 0.3600 17 8 9.0018 5.1117 0.8971 18 7 7.9662 3.0918 1.0005 19 6 7.7459 3.0086 2.3399 20 1 7.7789 3.9000 2.9489 21 6 7.4768 1.7705 2.9280 22 7 7.6151 0.6706 2.2308 23 14 6.9199 1.6836 4.7089 24 1 5.4378 1.7543 4.7680 25 1 7.3787 0.4051 5.3092 26 1 7.5004 2.8220 5.4653 27 6 5.2548 2.9853 0.0004 28 6 3.8850 2.8069 0.0004 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5725 0.0002 35 1 6.2281 -0.2456 -0.0040 36 1 7.1669 0.2228 -1.6787 37 1 6.3594 0.6608 -3.2033 38 1 8.0019 -0.0245 -3.2311 39 1 9.5246 5.4758 -1.6596 40 1 7.4287 -0.1892 2.6392 41 1 5.6690 3.9828 0.0007 42 1 3.2283 3.6643 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000813511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:33 Heat of formation + Delta-G solvation = -89.585948 kcal Electronic energy + Delta-G solvation = -29358.543168 eV Core-core repulsion = 25270.534902 eV Total energy + Delta-G solvation = -4088.008266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76102 -39.61034 -38.23808 -37.56401 -36.69814 -35.27067 -33.38183 -32.00444 -31.12305 -30.41935 -29.52672 -29.17242 -25.71813 -25.25258 -23.83424 -22.67780 -21.77833 -20.74556 -20.34495 -18.35024 -18.03803 -17.66790 -17.07758 -16.00315 -15.94672 -15.62170 -15.37304 -14.93652 -14.58492 -14.43477 -14.10816 -14.03084 -13.74929 -13.68080 -13.26172 -13.13406 -13.04146 -12.84977 -12.55598 -12.46249 -12.25243 -11.83512 -11.71080 -11.62056 -11.58373 -11.40753 -11.31888 -11.14874 -10.79524 -10.63482 -10.45235 -10.32212 -9.72024 -9.32560 -8.68073 -8.51949 -8.29543 -8.01335 -7.59375 -6.82299 -4.25218 1.20170 1.85532 1.91657 2.93645 3.03096 3.05600 3.26451 3.37867 3.70831 4.01069 4.06477 4.31511 4.54087 4.74713 4.85539 4.85712 4.91415 5.14906 5.20096 5.27394 5.33958 5.44288 5.55022 5.65343 5.68173 5.69412 5.81507 5.86224 5.94726 5.95330 6.12605 6.21908 6.41099 6.52744 6.67484 6.69043 6.76272 6.85062 7.05573 7.21170 7.27506 7.37453 7.74543 7.79338 8.04834 8.29563 8.69108 8.75633 9.56834 10.16865 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.005890 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.320664 B = 4753.056130 C = 6610.762195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.116 3.884 5 C -0.217 4.217 6 C -0.044 4.044 7 C -0.070 4.070 8 C 0.219 3.781 9 H 0.141 0.859 10 C -0.309 4.309 11 C 0.418 3.582 12 C -0.199 4.199 13 O -0.484 6.484 14 C 0.156 3.844 15 O -0.428 6.428 16 C 0.400 3.600 17 O -0.592 6.592 18 N -0.372 5.372 19 C -0.286 4.286 20 H 0.113 0.887 21 C 0.047 3.953 22 N -0.841 5.841 23 Si 0.934 3.066 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.059 4.059 28 C -0.156 4.156 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.281 0.719 41 H 0.119 0.881 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -6.477 -3.075 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.072 3.928 5 C -0.235 4.235 6 C -0.062 4.062 7 C -0.071 4.071 8 C 0.114 3.886 9 H 0.158 0.842 10 C -0.316 4.316 11 C 0.302 3.698 12 C -0.256 4.256 13 O -0.365 6.365 14 C 0.101 3.899 15 O -0.227 6.227 16 C 0.192 3.808 17 O -0.482 6.482 18 N -0.085 5.085 19 C -0.414 4.414 20 H 0.131 0.869 21 C -0.163 4.163 22 N -0.476 5.476 23 Si 0.758 3.242 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.077 4.077 28 C -0.175 4.175 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.122 -6.233 -3.583 11.615 hybrid contribution -0.023 -0.035 1.299 1.299 sum -9.145 -6.267 -2.285 11.320 Atomic orbital electron populations 1.21764 0.93228 1.02498 1.03327 1.22682 0.95388 0.82647 1.01249 1.86018 1.19744 1.28602 1.89275 1.18885 0.81605 0.94258 0.98084 1.21076 0.94377 0.97314 1.10775 1.20703 0.93513 0.96775 0.95229 1.19399 0.93939 0.92880 1.00871 1.19216 0.91646 0.95344 0.82349 0.84223 1.21114 1.15434 0.97762 0.97273 1.19820 0.75060 0.88237 0.86686 1.22271 1.02352 0.96384 1.04606 1.90554 1.41954 1.65911 1.38089 1.21867 0.88513 0.89686 0.89865 1.84874 1.71630 1.33183 1.33039 1.18480 0.88252 0.87744 0.86345 1.90680 1.55782 1.30042 1.71649 1.43499 1.43290 1.15656 1.06087 1.19701 1.45658 0.95482 0.80513 0.86941 1.25502 0.95564 0.94181 1.01025 1.69496 1.41315 0.98624 1.38150 0.85774 0.79406 0.78545 0.80436 1.19582 1.20229 1.18787 1.20718 0.91843 0.99016 0.96139 1.20233 0.94926 0.94435 1.07914 0.91690 0.90680 0.91676 0.92271 0.92274 0.86206 0.85399 0.89727 0.89734 0.89988 0.74563 0.90770 0.86328 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.61 5.46 37.16 0.20 0.82 16 3 O -0.32 -4.81 10.14 -19.43 -0.20 -5.01 16 4 C 0.12 1.92 6.69 -39.21 -0.26 1.66 16 5 C -0.22 -3.37 9.04 -39.43 -0.36 -3.72 16 6 C -0.04 -0.74 7.26 -39.61 -0.29 -1.03 16 7 C -0.07 -1.34 3.42 -104.60 -0.36 -1.70 16 8 C 0.22 4.54 1.57 -69.89 -0.11 4.43 16 9 H 0.14 3.00 6.14 -51.93 -0.32 2.68 16 10 C -0.31 -6.34 5.33 -104.14 -0.56 -6.89 16 11 C 0.42 8.08 7.00 -33.27 -0.23 7.85 16 12 C -0.20 -2.97 9.79 36.01 0.35 -2.62 16 13 O -0.48 -10.67 16.84 -8.87 -0.15 -10.82 16 14 C 0.16 3.36 7.38 -36.65 -0.27 3.09 16 15 O -0.43 -8.30 12.71 -33.49 -0.43 -8.72 16 16 C 0.40 9.65 7.89 -12.70 -0.10 9.55 16 17 O -0.59 -15.72 17.60 5.24 0.09 -15.62 16 18 N -0.37 -8.81 2.33 -111.18 -0.26 -9.07 16 19 C -0.29 -7.00 9.63 -15.16 -0.15 -7.15 16 20 H 0.11 2.86 7.85 -52.48 -0.41 2.45 16 21 C 0.05 1.05 5.17 -17.39 -0.09 0.96 16 22 N -0.84 -18.29 9.51 55.53 0.53 -17.76 16 23 Si 0.93 18.20 29.57 -169.99 -5.03 13.17 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 25 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 27 C -0.06 -1.13 9.23 -39.61 -0.37 -1.50 16 28 C -0.16 -2.74 9.99 -39.44 -0.39 -3.14 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 33 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.12 1.53 6.30 -52.48 -0.33 1.20 16 35 H 0.13 2.01 7.21 -52.49 -0.38 1.63 16 36 H 0.08 1.22 4.28 -51.93 -0.22 0.99 16 37 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 6.08 8.85 45.56 0.40 6.48 16 40 H 0.28 5.72 8.30 -40.82 -0.34 5.39 16 41 H 0.12 2.40 7.94 -52.49 -0.42 1.98 16 42 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -30.11 356.10 -6.80 -36.91 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.14 Total: 11.83 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.59 Total: -0.27 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.27 Total: -26.83 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.68 Total: -40.17 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.11 -6.80 -36.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000813511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.674 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds