Wall clock time and date at job start Tue Mar 31 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.46675 * 2 1 4 4 C 1.35902 * 116.99872 * 180.02562 * 3 2 1 5 5 C 1.38737 * 120.05697 * 359.94534 * 4 3 2 6 6 C 1.38141 * 119.94393 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.05727 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.94426 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.09984 * 348.19889 * 8 7 6 10 10 C 1.51108 * 110.12196 * 109.81403 * 8 7 6 11 11 C 1.40974 * 126.69398 * 299.13698 * 10 8 7 12 12 C 1.50699 * 119.99424 * 355.79352 * 11 10 8 13 13 O 1.21451 * 120.00288 * 175.80106 * 11 10 8 14 14 C 1.36154 * 106.62188 * 119.16544 * 10 8 7 15 15 O 1.35256 * 125.44305 * 180.02562 * 14 10 8 16 16 C 1.47295 * 109.11927 * 0.02562 * 14 10 8 17 17 O 1.21642 * 124.95074 * 179.97438 * 16 14 10 18 18 N 1.34508 * 110.09631 * 359.97438 * 16 14 10 19 19 C 1.35999 * 125.98654 * 180.02562 * 18 16 14 20 20 H 1.08004 * 119.99570 * 18.60189 * 19 18 16 21 21 C 1.39685 * 119.99966 * 198.59458 * 19 18 16 22 22 N 1.30953 * 120.00133 * 9.31358 * 21 19 18 23 23 Si 1.86799 * 120.00005 * 189.30717 * 21 19 18 24 24 H 1.48497 * 109.46986 * 90.00718 * 23 21 19 25 25 H 1.48503 * 109.47297 * 210.00434 * 23 21 19 26 26 H 1.48501 * 109.47500 * 330.00379 * 23 21 19 27 27 C 1.38265 * 120.11245 * 0.02562 * 7 6 5 28 28 C 1.38140 * 120.05545 * 359.97404 * 27 7 6 29 29 H 1.09002 * 109.47161 * 60.00493 * 1 2 3 30 30 H 1.09006 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47674 * 300.00169 * 1 2 3 32 32 H 1.09003 * 109.47546 * 240.00271 * 2 1 3 33 33 H 1.09002 * 109.47161 * 119.99507 * 2 1 3 34 34 H 1.08006 * 120.02151 * 0.05034 * 5 4 3 35 35 H 1.08002 * 119.96922 * 180.27784 * 6 5 4 36 36 H 1.09000 * 109.47361 * 354.18066 * 12 11 10 37 37 H 1.09010 * 109.47081 * 114.17423 * 12 11 10 38 38 H 1.09001 * 109.47561 * 234.17074 * 12 11 10 39 39 H 0.96696 * 114.00037 * 180.02562 * 15 14 10 40 40 H 0.96995 * 120.00337 * 179.97438 * 22 21 19 41 41 H 1.08002 * 119.97377 * 179.97438 * 27 7 6 42 42 H 1.07997 * 120.02771 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 4.1998 0.4261 0.0001 6 6 5.5689 0.6099 0.0001 7 6 6.0961 1.8880 0.0000 8 6 7.5901 2.0856 0.0005 9 1 8.0927 1.1414 0.2103 10 6 8.0430 2.6302 -1.3343 11 6 7.8966 2.0087 -2.5911 12 6 7.3161 0.6210 -2.6823 13 8 8.2385 2.5915 -3.6003 14 6 8.6205 3.8380 -1.0864 15 8 9.1579 4.6566 -2.0194 16 6 8.5667 4.1108 0.3600 17 8 9.0018 5.1117 0.8971 18 7 7.9662 3.0918 1.0005 19 6 7.7459 3.0086 2.3399 20 1 7.7789 3.9000 2.9489 21 6 7.4768 1.7705 2.9280 22 7 7.6151 0.6706 2.2308 23 14 6.9199 1.6836 4.7089 24 1 5.4378 1.7543 4.7680 25 1 7.3787 0.4051 5.3092 26 1 7.5004 2.8220 5.4653 27 6 5.2548 2.9853 0.0004 28 6 3.8850 2.8069 0.0004 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5725 0.0002 35 1 6.2281 -0.2456 -0.0040 36 1 7.1669 0.2228 -1.6787 37 1 6.3594 0.6608 -3.2033 38 1 8.0019 -0.0245 -3.2311 39 1 9.5246 5.4758 -1.6596 40 1 7.4287 -0.1892 2.6392 41 1 5.6690 3.9828 0.0007 42 1 3.2283 3.6643 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000813511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:32 Heat of formation + Delta-G solvation = -107.887780 kcal Electronic energy + Delta-G solvation = -29359.336795 eV Core-core repulsion = 25270.534902 eV Total energy + Delta-G solvation = -4088.801893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40608 -40.86571 -39.87437 -39.01089 -38.20222 -37.01412 -35.12716 -33.15538 -32.52838 -31.76383 -30.95678 -30.51472 -27.45316 -26.77967 -24.89478 -24.23217 -23.02189 -22.09007 -22.01266 -19.95494 -19.51565 -19.14313 -18.71525 -17.59827 -17.24196 -16.94929 -16.66894 -16.56391 -16.14627 -15.91778 -15.69806 -15.60062 -15.28653 -15.12805 -14.45580 -14.44778 -14.33862 -14.29535 -14.02640 -13.84985 -13.39625 -13.19364 -13.13669 -12.95424 -12.89430 -12.84260 -12.57151 -12.45454 -12.41321 -12.16982 -11.58750 -11.56846 -11.36845 -11.00912 -10.43190 -10.13711 -9.81209 -9.66503 -8.93016 -8.57586 -6.10896 -0.45348 0.49793 0.55616 1.34719 1.42366 1.50544 1.66219 2.08544 2.28305 2.33421 2.46626 2.85656 2.93150 3.05358 3.20851 3.69943 3.95164 3.98062 4.03810 4.08176 4.12481 4.24894 4.42717 4.45712 4.50590 4.55320 4.72667 4.74181 4.86902 4.91588 4.97622 4.99174 5.05383 5.20541 5.22369 5.24538 5.30962 5.39114 5.49752 5.57387 5.83560 5.89602 6.25542 6.32439 6.56703 6.76341 6.86027 6.93897 7.74220 8.41602 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.005890 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.320664 B = 4753.056130 C = 6610.762195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.334 6.334 4 C 0.121 3.879 5 C -0.206 4.206 6 C -0.041 4.041 7 C -0.086 4.086 8 C 0.225 3.775 9 H 0.138 0.862 10 C -0.304 4.304 11 C 0.416 3.584 12 C -0.189 4.189 13 O -0.514 6.514 14 C 0.146 3.854 15 O -0.430 6.430 16 C 0.374 3.626 17 O -0.636 6.636 18 N -0.372 5.372 19 C -0.326 4.326 20 H 0.088 0.912 21 C 0.031 3.969 22 N -0.834 5.834 23 Si 0.988 3.012 24 H -0.269 1.269 25 H -0.259 1.259 26 H -0.274 1.274 27 C -0.077 4.077 28 C -0.168 4.168 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.416 0.584 40 H 0.294 0.706 41 H 0.092 0.908 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 -10.218 -3.103 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.075 3.925 5 C -0.224 4.224 6 C -0.060 4.060 7 C -0.087 4.087 8 C 0.121 3.879 9 H 0.155 0.845 10 C -0.311 4.311 11 C 0.302 3.698 12 C -0.245 4.245 13 O -0.397 6.397 14 C 0.090 3.910 15 O -0.231 6.231 16 C 0.167 3.833 17 O -0.529 6.529 18 N -0.083 5.083 19 C -0.453 4.453 20 H 0.105 0.895 21 C -0.180 4.180 22 N -0.467 5.467 23 Si 0.810 3.190 24 H -0.194 1.194 25 H -0.183 1.183 26 H -0.199 1.199 27 C -0.095 4.095 28 C -0.186 4.186 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.218 -10.022 -3.632 15.475 hybrid contribution 0.511 1.036 1.327 1.759 sum -10.706 -8.986 -2.305 14.166 Atomic orbital electron populations 1.21801 0.91512 1.04167 1.03017 1.23080 0.96843 0.80837 1.02375 1.86031 1.18587 1.31404 1.88827 1.18941 0.82712 0.93933 0.96870 1.21391 0.93509 0.98655 1.08849 1.20864 0.94509 0.95994 0.94596 1.19288 0.92495 0.93958 1.02921 1.19238 0.93067 0.94053 0.81502 0.84499 1.21481 1.14215 0.97289 0.98143 1.20410 0.74170 0.89869 0.85343 1.22247 1.03345 0.93221 1.05736 1.90543 1.43298 1.67132 1.38687 1.21709 0.89867 0.90701 0.88709 1.84833 1.71676 1.33947 1.32672 1.18908 0.88916 0.87883 0.87623 1.90610 1.57905 1.31628 1.72804 1.43689 1.42107 1.16040 1.06458 1.19660 1.48704 0.95811 0.81134 0.89456 1.26065 0.94624 0.93372 1.03932 1.69485 1.39076 0.98979 1.39142 0.84999 0.78830 0.78738 0.76443 1.19377 1.18316 1.19913 1.20588 0.92911 0.98104 0.97923 1.20312 0.94270 0.95809 1.08235 0.91829 0.87992 0.92214 0.90661 0.91448 0.82668 0.83748 0.89047 0.87915 0.87544 0.72820 0.89450 0.88929 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.04 0.78 5.46 71.98 0.39 1.17 16 3 O -0.33 -9.05 10.14 -92.45 -0.94 -9.99 16 4 C 0.12 3.69 6.69 22.51 0.15 3.84 16 5 C -0.21 -5.62 9.04 22.37 0.20 -5.41 16 6 C -0.04 -1.28 7.26 22.25 0.16 -1.12 16 7 C -0.09 -3.23 3.42 -19.85 -0.07 -3.30 16 8 C 0.22 9.41 1.57 43.58 0.07 9.47 16 9 H 0.14 5.78 6.14 -2.39 -0.01 5.77 16 10 C -0.30 -12.66 5.33 -19.55 -0.10 -12.77 16 11 C 0.42 15.75 7.00 26.36 0.18 15.94 16 12 C -0.19 -5.08 9.79 71.24 0.70 -4.38 16 13 O -0.51 -22.44 16.84 10.09 0.17 -22.27 16 14 C 0.15 6.55 7.38 24.17 0.18 6.73 16 15 O -0.43 -17.38 12.71 -70.07 -0.89 -18.27 16 16 C 0.37 19.18 7.89 86.67 0.68 19.87 16 17 O -0.64 -36.27 17.60 -4.16 -0.07 -36.34 16 18 N -0.37 -18.35 2.33 -624.07 -1.45 -19.80 16 19 C -0.33 -16.55 9.63 84.40 0.81 -15.74 16 20 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 21 C 0.03 1.37 5.17 85.17 0.44 1.81 16 22 N -0.83 -34.76 9.51 21.78 0.21 -34.55 16 23 Si 0.99 36.36 29.57 68.60 2.03 38.39 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 26 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 27 C -0.08 -3.01 9.23 22.25 0.21 -2.81 16 28 C -0.17 -5.82 9.99 22.36 0.22 -5.59 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.14 7.66 -2.39 -0.02 1.12 16 33 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 34 H 0.16 3.12 6.30 -2.91 -0.02 3.10 16 35 H 0.14 3.97 7.21 -2.91 -0.02 3.94 16 36 H 0.09 2.33 4.28 -2.39 -0.01 2.32 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.42 13.50 8.85 -74.06 -0.66 12.84 16 40 H 0.29 11.04 8.30 -92.71 -0.77 10.27 16 41 H 0.09 4.04 7.94 -2.91 -0.02 4.01 16 42 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -67.22 356.10 4.45 -62.77 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.43 Total: 33.63 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.97 Total: 6.45 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -1.24 Total: -54.36 kcal Atomic # 8 Polarization: -85.15 SS G_CDS: -1.73 Total: -86.88 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Total: -67.22 4.45 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000813511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.117 kcal (2) G-P(sol) polarization free energy of solvation -67.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds