Wall clock time and date at job start Tue Mar 31 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47540 * 2 1 4 4 C 1.35903 * 117.00078 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05645 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94540 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.05449 * 0.28122 * 6 5 4 8 8 C 1.50696 * 119.94530 * 179.72044 * 7 6 5 9 9 H 1.08997 * 110.10066 * 16.04008 * 8 7 6 10 10 C 1.51117 * 110.12409 * 254.42716 * 8 7 6 11 11 C 1.40969 * 126.68884 * 60.84854 * 10 8 7 12 12 C 1.50703 * 119.99957 * 6.48783 * 11 10 8 13 13 O 1.21448 * 120.00197 * 186.48837 * 11 10 8 14 14 C 1.36155 * 106.62056 * 240.83397 * 10 8 7 15 15 O 1.35251 * 125.43589 * 179.97438 * 14 10 8 16 16 C 1.47290 * 109.12010 * 359.97438 * 14 10 8 17 17 O 1.21633 * 124.94571 * 180.02562 * 16 14 10 18 18 N 1.34502 * 110.09760 * 0.02562 * 16 14 10 19 19 C 1.35996 * 125.98344 * 180.02562 * 18 16 14 20 20 H 1.07998 * 119.99740 * 333.61259 * 19 18 16 21 21 C 1.39701 * 119.99975 * 153.61928 * 19 18 16 22 22 N 1.30955 * 119.99941 * 2.48633 * 21 19 18 23 23 Si 1.86797 * 120.00051 * 182.48548 * 21 19 18 24 24 H 1.48500 * 109.47207 * 59.99596 * 23 21 19 25 25 H 1.48496 * 109.47261 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47306 * 300.00180 * 23 21 19 27 27 C 1.38266 * 120.11139 * 359.44411 * 7 6 5 28 28 C 1.38146 * 120.05393 * 0.55253 * 27 7 6 29 29 H 1.09004 * 109.47486 * 300.00799 * 1 2 3 30 30 H 1.09007 * 109.46586 * 59.99878 * 1 2 3 31 31 H 1.08994 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47486 * 239.99201 * 2 1 3 33 33 H 1.09007 * 109.46586 * 120.00122 * 2 1 3 34 34 H 1.08004 * 120.02519 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.97066 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47167 * 5.69276 * 12 11 10 37 37 H 1.08999 * 109.47249 * 125.69112 * 12 11 10 38 38 H 1.08998 * 109.47519 * 245.68854 * 12 11 10 39 39 H 0.96701 * 113.99585 * 179.97438 * 15 14 10 40 40 H 0.96996 * 120.00036 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.97328 * 180.25688 * 27 7 6 42 42 H 1.08009 * 120.02477 * 179.70400 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8853 2.8066 0.0000 6 6 5.2552 2.9849 0.0011 7 6 6.0963 1.8875 -0.0032 8 6 7.5903 2.0848 -0.0083 9 1 7.8339 3.1088 0.2748 10 6 8.1507 1.7768 -1.3775 11 6 7.8309 2.4303 -2.5850 12 6 6.9506 3.6534 -2.5696 13 8 8.2649 2.0078 -3.6376 14 6 9.0248 0.7453 -1.2175 15 8 9.7432 0.1657 -2.2061 16 6 9.0632 0.3615 0.2040 17 8 9.7501 -0.5292 0.6668 18 7 8.2279 1.1394 0.9154 19 6 8.0126 1.0636 2.2561 20 1 8.1658 0.1293 2.7756 21 6 7.5931 2.1944 2.9612 22 7 7.3603 3.3144 2.3238 23 14 7.3643 2.1086 4.8131 24 1 8.6528 1.7432 5.4547 25 1 6.9179 3.4316 5.3185 26 1 6.3410 1.0828 5.1385 27 6 5.5690 0.6094 0.0031 28 6 4.1998 0.4258 0.0021 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.2287 3.6641 -0.0004 35 1 5.6695 3.9822 0.0003 36 1 6.7436 3.9392 -1.5383 37 1 7.4580 4.4728 -3.0788 38 1 6.0134 3.4330 -3.0806 39 1 10.3146 -0.5547 -1.9066 40 1 7.0695 4.0996 2.8134 41 1 6.2281 -0.2462 0.0039 42 1 3.7884 -0.5729 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000813512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:39 Heat of formation + Delta-G solvation = -89.564611 kcal Electronic energy + Delta-G solvation = -29308.355595 eV Core-core repulsion = 25220.348254 eV Total energy + Delta-G solvation = -4088.007341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.75714 -39.59506 -38.25104 -37.56012 -36.70273 -35.29022 -33.36505 -31.91008 -31.23592 -30.37857 -29.50922 -29.16539 -25.70464 -25.22580 -23.84039 -22.75084 -21.62829 -20.77936 -20.36330 -18.34367 -18.03946 -17.64742 -17.06561 -16.06161 -15.98412 -15.67318 -15.12052 -14.94341 -14.62547 -14.44043 -14.11158 -14.03968 -13.93086 -13.45875 -13.29577 -13.21861 -13.07350 -12.69769 -12.61821 -12.42672 -12.26651 -11.85785 -11.69242 -11.66490 -11.55882 -11.38987 -11.23619 -11.14298 -10.85930 -10.65204 -10.44021 -10.30144 -9.60068 -9.34095 -8.70207 -8.47972 -8.27958 -8.01841 -7.57820 -6.79288 -4.29511 1.19891 1.87667 1.92891 2.96866 3.03368 3.04793 3.25683 3.39453 3.71902 4.01039 4.07275 4.32279 4.54730 4.70884 4.85681 4.87656 4.93402 5.17760 5.21754 5.28711 5.35174 5.46527 5.56170 5.64687 5.69116 5.70090 5.83358 5.87475 5.94485 5.97415 6.12200 6.24751 6.41475 6.52222 6.66858 6.71734 6.77720 6.86835 7.07182 7.20892 7.29304 7.43345 7.75465 7.77918 8.06197 8.28138 8.68575 8.75843 9.56713 10.20119 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008596 B = 0.005949 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.722052 B = 4705.888653 C = 6463.534446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.322 6.322 4 C 0.115 3.885 5 C -0.160 4.160 6 C -0.048 4.048 7 C -0.067 4.067 8 C 0.215 3.785 9 H 0.143 0.857 10 C -0.305 4.305 11 C 0.418 3.582 12 C -0.200 4.200 13 O -0.484 6.484 14 C 0.152 3.848 15 O -0.429 6.429 16 C 0.407 3.593 17 O -0.590 6.590 18 N -0.375 5.375 19 C -0.289 4.289 20 H 0.109 0.891 21 C 0.048 3.952 22 N -0.843 5.843 23 Si 0.936 3.064 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.057 4.057 28 C -0.211 4.211 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.401 0.599 40 H 0.282 0.718 41 H 0.114 0.886 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 0.736 -2.809 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.071 3.929 5 C -0.179 4.179 6 C -0.066 4.066 7 C -0.068 4.068 8 C 0.111 3.889 9 H 0.159 0.841 10 C -0.312 4.312 11 C 0.302 3.698 12 C -0.257 4.257 13 O -0.364 6.364 14 C 0.097 3.903 15 O -0.228 6.228 16 C 0.198 3.802 17 O -0.479 6.479 18 N -0.089 5.089 19 C -0.417 4.417 20 H 0.126 0.874 21 C -0.162 4.162 22 N -0.478 5.478 23 Si 0.761 3.239 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.193 1.193 27 C -0.076 4.076 28 C -0.230 4.230 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.833 0.851 -3.327 10.415 hybrid contribution 0.216 -0.632 1.307 1.468 sum -9.616 0.219 -2.020 9.829 Atomic orbital electron populations 1.21760 0.93185 1.02515 1.03280 1.22687 0.95386 0.82655 1.01321 1.86005 1.19717 1.28598 1.89309 1.18888 0.81552 0.94296 0.98204 1.20267 0.95075 0.94249 1.08259 1.20721 0.91335 0.98738 0.95836 1.19392 0.94008 0.92795 1.00612 1.19339 0.88344 0.98029 0.83166 0.84053 1.21172 1.08257 1.04098 0.97625 1.19856 0.78645 0.84637 0.86690 1.22299 1.00795 0.97811 1.04812 1.90553 1.47826 1.64563 1.33480 1.21872 0.88842 0.90554 0.89044 1.84874 1.55409 1.50223 1.32267 1.18562 0.86345 0.89113 0.86166 1.90677 1.47123 1.34963 1.75091 1.43419 1.31125 1.27790 1.06521 1.19563 1.44344 0.97767 0.79998 0.87367 1.25590 0.95119 0.94073 1.01384 1.69449 1.39173 1.01624 1.37554 0.85811 0.79429 0.78159 0.80501 1.19208 1.20209 1.19307 1.20682 0.93790 0.97236 0.95880 1.21037 0.94210 0.97449 1.10310 0.91672 0.91702 0.90685 0.92309 0.92244 0.85889 0.85078 0.89620 0.89932 0.89608 0.74587 0.90658 0.86753 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.63 5.46 37.16 0.20 0.84 16 3 O -0.32 -4.81 10.14 -19.44 -0.20 -5.01 16 4 C 0.12 1.90 6.69 -39.22 -0.26 1.64 16 5 C -0.16 -2.58 9.99 -39.43 -0.39 -2.97 16 6 C -0.05 -0.82 7.75 -39.61 -0.31 -1.12 16 7 C -0.07 -1.29 3.69 -104.60 -0.39 -1.68 16 8 C 0.22 4.48 1.56 -69.89 -0.11 4.37 16 9 H 0.14 3.04 6.04 -51.93 -0.31 2.73 16 10 C -0.30 -6.25 5.39 -104.13 -0.56 -6.82 16 11 C 0.42 8.07 6.98 -33.27 -0.23 7.83 16 12 C -0.20 -2.97 9.65 36.01 0.35 -2.63 16 13 O -0.48 -10.63 16.86 -8.68 -0.15 -10.78 16 14 C 0.15 3.28 7.38 -36.65 -0.27 3.01 16 15 O -0.43 -8.28 12.72 -33.31 -0.42 -8.71 16 16 C 0.41 9.80 7.89 -12.70 -0.10 9.70 16 17 O -0.59 -15.59 17.60 5.25 0.09 -15.50 16 18 N -0.37 -8.88 2.15 -111.19 -0.24 -9.11 16 19 C -0.29 -7.08 9.49 -15.16 -0.14 -7.23 16 20 H 0.11 2.73 7.84 -52.49 -0.41 2.32 16 21 C 0.05 1.09 5.40 -17.38 -0.09 0.99 16 22 N -0.84 -18.56 9.91 55.53 0.55 -18.01 16 23 Si 0.94 18.28 29.56 -169.99 -5.02 13.25 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.06 -1.11 9.23 -39.61 -0.37 -1.47 16 28 C -0.21 -3.59 9.04 -39.43 -0.36 -3.95 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 34 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 35 H 0.13 2.04 6.89 -52.49 -0.36 1.68 16 36 H 0.09 1.22 4.18 -51.93 -0.22 1.00 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.40 6.05 8.85 45.56 0.40 6.45 16 40 H 0.28 5.85 8.30 -40.82 -0.34 5.51 16 41 H 0.11 2.34 7.80 -52.49 -0.41 1.93 16 42 H 0.12 1.74 6.30 -52.48 -0.33 1.41 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -30.15 356.43 -6.77 -36.92 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.11 Total: 11.99 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.65 Total: -0.42 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.31 Total: -27.12 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.67 Total: -39.99 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.15 -6.77 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000813512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.644 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds