Wall clock time and date at job start Tue Mar 31 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47540 * 2 1 4 4 C 1.35903 * 117.00078 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05645 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94540 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.05449 * 0.28122 * 6 5 4 8 8 C 1.50696 * 119.94530 * 179.72044 * 7 6 5 9 9 H 1.08997 * 110.10066 * 16.04008 * 8 7 6 10 10 C 1.51117 * 110.12409 * 254.42716 * 8 7 6 11 11 C 1.40969 * 126.68884 * 60.84854 * 10 8 7 12 12 C 1.50703 * 119.99957 * 6.48783 * 11 10 8 13 13 O 1.21448 * 120.00197 * 186.48837 * 11 10 8 14 14 C 1.36155 * 106.62056 * 240.83397 * 10 8 7 15 15 O 1.35251 * 125.43589 * 179.97438 * 14 10 8 16 16 C 1.47290 * 109.12010 * 359.97438 * 14 10 8 17 17 O 1.21633 * 124.94571 * 180.02562 * 16 14 10 18 18 N 1.34502 * 110.09760 * 0.02562 * 16 14 10 19 19 C 1.35996 * 125.98344 * 180.02562 * 18 16 14 20 20 H 1.07998 * 119.99740 * 333.61259 * 19 18 16 21 21 C 1.39701 * 119.99975 * 153.61928 * 19 18 16 22 22 N 1.30955 * 119.99941 * 2.48633 * 21 19 18 23 23 Si 1.86797 * 120.00051 * 182.48548 * 21 19 18 24 24 H 1.48500 * 109.47207 * 59.99596 * 23 21 19 25 25 H 1.48496 * 109.47261 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47306 * 300.00180 * 23 21 19 27 27 C 1.38266 * 120.11139 * 359.44411 * 7 6 5 28 28 C 1.38146 * 120.05393 * 0.55253 * 27 7 6 29 29 H 1.09004 * 109.47486 * 300.00799 * 1 2 3 30 30 H 1.09007 * 109.46586 * 59.99878 * 1 2 3 31 31 H 1.08994 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47486 * 239.99201 * 2 1 3 33 33 H 1.09007 * 109.46586 * 120.00122 * 2 1 3 34 34 H 1.08004 * 120.02519 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.97066 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47167 * 5.69276 * 12 11 10 37 37 H 1.08999 * 109.47249 * 125.69112 * 12 11 10 38 38 H 1.08998 * 109.47519 * 245.68854 * 12 11 10 39 39 H 0.96701 * 113.99585 * 179.97438 * 15 14 10 40 40 H 0.96996 * 120.00036 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.97328 * 180.25688 * 27 7 6 42 42 H 1.08009 * 120.02477 * 179.70400 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8853 2.8066 0.0000 6 6 5.2552 2.9849 0.0011 7 6 6.0963 1.8875 -0.0032 8 6 7.5903 2.0848 -0.0083 9 1 7.8339 3.1088 0.2748 10 6 8.1507 1.7768 -1.3775 11 6 7.8309 2.4303 -2.5850 12 6 6.9506 3.6534 -2.5696 13 8 8.2649 2.0078 -3.6376 14 6 9.0248 0.7453 -1.2175 15 8 9.7432 0.1657 -2.2061 16 6 9.0632 0.3615 0.2040 17 8 9.7501 -0.5292 0.6668 18 7 8.2279 1.1394 0.9154 19 6 8.0126 1.0636 2.2561 20 1 8.1658 0.1293 2.7756 21 6 7.5931 2.1944 2.9612 22 7 7.3603 3.3144 2.3238 23 14 7.3643 2.1086 4.8131 24 1 8.6528 1.7432 5.4547 25 1 6.9179 3.4316 5.3185 26 1 6.3410 1.0828 5.1385 27 6 5.5690 0.6094 0.0031 28 6 4.1998 0.4258 0.0021 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.2287 3.6641 -0.0004 35 1 5.6695 3.9822 0.0003 36 1 6.7436 3.9392 -1.5383 37 1 7.4580 4.4728 -3.0788 38 1 6.0134 3.4330 -3.0806 39 1 10.3146 -0.5547 -1.9066 40 1 7.0695 4.0996 2.8134 41 1 6.2281 -0.2462 0.0039 42 1 3.7884 -0.5729 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000813512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:38 Heat of formation + Delta-G solvation = -107.691109 kcal Electronic energy + Delta-G solvation = -29309.141619 eV Core-core repulsion = 25220.348254 eV Total energy + Delta-G solvation = -4088.793365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.40672 -40.86651 -39.88805 -39.01197 -38.21076 -37.03569 -35.11031 -33.02917 -32.70062 -31.77926 -30.90206 -30.52503 -27.44063 -26.77025 -24.88880 -24.34611 -22.89739 -22.09652 -22.05721 -19.94462 -19.52775 -19.15524 -18.71144 -17.64868 -17.28362 -16.98331 -16.57493 -16.49758 -16.17316 -15.91896 -15.73719 -15.58687 -15.45961 -14.94576 -14.65184 -14.39959 -14.30309 -14.25802 -14.08969 -13.82511 -13.38841 -13.23142 -13.18256 -13.00178 -12.89491 -12.77881 -12.54881 -12.49008 -12.38397 -12.16149 -11.61221 -11.56068 -11.31766 -11.02736 -10.45039 -10.09469 -9.80495 -9.67497 -8.92838 -8.55074 -6.15340 -0.45684 0.52507 0.54837 1.37357 1.42207 1.50174 1.65528 2.08863 2.27989 2.32581 2.46384 2.85687 2.92954 3.03038 3.21156 3.70360 3.90013 3.97667 4.03091 4.06799 4.09194 4.20934 4.38658 4.43231 4.56314 4.57195 4.70597 4.75346 4.87089 4.91960 4.96339 4.97696 5.06343 5.20228 5.22104 5.24414 5.31438 5.40510 5.49038 5.62718 5.83576 5.91371 6.25976 6.32025 6.53536 6.75024 6.85323 6.93893 7.73773 8.43919 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008596 B = 0.005949 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.722052 B = 4705.888653 C = 6463.534446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.326 6.326 4 C 0.117 3.883 5 C -0.156 4.156 6 C -0.045 4.045 7 C -0.083 4.083 8 C 0.222 3.778 9 H 0.139 0.861 10 C -0.300 4.300 11 C 0.417 3.583 12 C -0.191 4.191 13 O -0.513 6.513 14 C 0.142 3.858 15 O -0.430 6.430 16 C 0.383 3.617 17 O -0.632 6.632 18 N -0.375 5.375 19 C -0.327 4.327 20 H 0.086 0.914 21 C 0.028 3.972 22 N -0.838 5.838 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.259 1.259 26 H -0.270 1.270 27 C -0.078 4.078 28 C -0.213 4.213 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.416 0.584 40 H 0.293 0.707 41 H 0.088 0.912 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 2.817 -2.678 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.241 6.241 4 C 0.072 3.928 5 C -0.174 4.174 6 C -0.063 4.063 7 C -0.084 4.084 8 C 0.118 3.882 9 H 0.156 0.844 10 C -0.307 4.307 11 C 0.302 3.698 12 C -0.247 4.247 13 O -0.395 6.395 14 C 0.087 3.913 15 O -0.231 6.231 16 C 0.175 3.825 17 O -0.525 6.525 18 N -0.087 5.087 19 C -0.454 4.454 20 H 0.104 0.896 21 C -0.182 4.182 22 N -0.472 5.472 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.182 1.182 26 H -0.195 1.195 27 C -0.097 4.097 28 C -0.232 4.232 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.272 0.728 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.543 2.961 -3.213 13.282 hybrid contribution 0.949 -1.277 1.277 2.040 sum -11.594 1.684 -1.936 11.875 Atomic orbital electron populations 1.21781 0.90907 1.04101 1.03392 1.23016 0.97213 0.81208 1.01693 1.86020 1.18485 1.30702 1.88880 1.19026 0.82344 0.94261 0.97135 1.20575 0.94971 0.95053 1.06824 1.20867 0.91574 0.98657 0.95213 1.19300 0.92970 0.93551 1.02551 1.19341 0.89551 0.96814 0.82482 0.84403 1.21533 1.07276 1.03503 0.98377 1.20435 0.78449 0.85541 0.85363 1.22283 1.00601 0.95914 1.05909 1.90541 1.49129 1.65700 1.34151 1.21708 0.90121 0.91489 0.88017 1.84834 1.55632 1.50936 1.31732 1.18991 0.86582 0.89436 0.87472 1.90610 1.48885 1.36764 1.76193 1.43603 1.30571 1.27758 1.06781 1.19546 1.46988 0.98070 0.80822 0.89623 1.26174 0.94062 0.93460 1.04508 1.69452 1.37234 1.01696 1.38771 0.85027 0.78837 0.78771 0.76102 1.19920 1.18233 1.19523 1.20598 0.94628 0.96656 0.97785 1.21163 0.93296 0.98836 1.09905 0.91705 0.91414 0.88394 0.91670 0.92172 0.83196 0.83345 0.88953 0.87508 0.87784 0.72809 0.89551 0.89374 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.04 0.90 5.46 71.98 0.39 1.29 16 3 O -0.33 -8.89 10.14 -92.46 -0.94 -9.82 16 4 C 0.12 3.62 6.69 22.50 0.15 3.77 16 5 C -0.16 -4.55 9.99 22.36 0.22 -4.33 16 6 C -0.04 -1.42 7.75 22.25 0.17 -1.25 16 7 C -0.08 -3.15 3.69 -19.85 -0.07 -3.22 16 8 C 0.22 9.29 1.56 43.58 0.07 9.36 16 9 H 0.14 5.87 6.04 -2.39 -0.01 5.85 16 10 C -0.30 -12.45 5.39 -19.55 -0.11 -12.56 16 11 C 0.42 15.72 6.98 26.36 0.18 15.90 16 12 C -0.19 -5.13 9.65 71.24 0.69 -4.44 16 13 O -0.51 -22.28 16.86 9.92 0.17 -22.12 16 14 C 0.14 6.35 7.38 24.17 0.18 6.53 16 15 O -0.43 -17.21 12.72 -70.18 -0.89 -18.10 16 16 C 0.38 19.49 7.89 86.67 0.68 20.18 16 17 O -0.63 -35.65 17.60 -4.13 -0.07 -35.72 16 18 N -0.38 -18.48 2.15 -624.09 -1.34 -19.82 16 19 C -0.33 -16.59 9.49 84.40 0.80 -15.78 16 20 H 0.09 4.61 7.84 -2.91 -0.02 4.59 16 21 C 0.03 1.27 5.40 85.18 0.46 1.73 16 22 N -0.84 -35.71 9.91 21.78 0.22 -35.49 16 23 Si 0.99 36.71 29.56 68.60 2.03 38.73 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 26 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 27 C -0.08 -3.05 9.23 22.25 0.21 -2.85 16 28 C -0.21 -7.08 9.04 22.37 0.20 -6.88 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.27 7.66 -2.38 -0.02 1.25 16 33 H 0.06 1.24 7.66 -2.38 -0.02 1.22 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.15 4.12 6.89 -2.91 -0.02 4.10 16 36 H 0.09 2.36 4.18 -2.39 -0.01 2.35 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.42 13.30 8.85 -74.06 -0.66 12.65 16 40 H 0.29 11.38 8.30 -92.71 -0.77 10.61 16 41 H 0.09 3.84 7.80 -2.91 -0.02 3.82 16 42 H 0.13 3.86 6.30 -2.91 -0.02 3.85 16 Total: -1.00 -66.48 356.43 4.56 -61.91 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.43 Total: 34.37 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 4.97 Total: 6.06 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -1.13 Total: -55.31 kcal Atomic # 8 Polarization: -84.03 SS G_CDS: -1.74 Total: -85.77 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.73 kcal Total: -66.48 4.56 -61.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000813512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.779 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds