Wall clock time and date at job start Tue Mar 31 2020 04:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47215 * 128.00276 * 3 2 1 5 5 C 1.53004 * 109.47326 * 175.40292 * 4 3 2 6 6 C 1.52998 * 108.54713 * 179.64849 * 5 4 3 7 7 C 1.50700 * 109.47289 * 177.93792 * 6 5 4 8 8 H 1.08006 * 119.99906 * 5.25799 * 7 6 5 9 9 C 1.37875 * 120.00469 * 185.25974 * 7 6 5 10 10 N 1.31515 * 119.99771 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00182 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47067 * 60.00208 * 11 9 7 13 13 H 1.48504 * 109.47040 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47245 * 299.99983 * 11 9 7 15 15 C 1.49844 * 108.59832 * 61.75183 * 5 4 3 16 16 C 1.38559 * 118.91878 * 41.25588 * 15 5 4 17 17 C 1.38152 * 120.49865 * 179.45274 * 16 15 5 18 18 C 1.38417 * 120.52643 * 359.80116 * 17 16 15 19 19 C 1.37952 * 119.79273 * 0.22814 * 18 17 16 20 20 C 1.39388 * 122.16610 * 220.80838 * 15 5 4 21 21 C 1.48004 * 119.59316 * 1.08951 * 20 15 5 22 22 O 1.21559 * 121.14933 * 196.92084 * 21 20 15 23 23 C 1.48010 * 117.70665 * 16.93821 * 21 20 15 24 24 C 1.39529 * 119.94389 * 162.58124 * 23 21 20 25 25 C 1.37943 * 119.81552 * 181.01606 * 24 23 21 26 26 C 1.38424 * 119.77882 * 0.03813 * 25 24 23 27 27 C 1.38148 * 120.53458 * 359.69072 * 26 25 24 28 28 C 1.38573 * 120.49483 * 0.11601 * 27 26 25 29 29 H 1.09005 * 109.47317 * 8.00437 * 3 2 1 30 30 H 1.09001 * 109.47343 * 248.00746 * 3 2 1 31 31 H 1.09001 * 109.46860 * 55.40149 * 4 3 2 32 32 H 1.08998 * 109.47480 * 295.40622 * 4 3 2 33 33 H 1.08998 * 109.47118 * 297.93697 * 6 5 4 34 34 H 1.08997 * 109.47165 * 57.93254 * 6 5 4 35 35 H 0.96997 * 120.00342 * 179.97438 * 10 9 7 36 36 H 1.08001 * 119.75033 * 359.42367 * 16 15 5 37 37 H 1.07993 * 119.73653 * 179.82220 * 17 16 15 38 38 H 1.07997 * 120.10560 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.10218 * 180.02562 * 19 18 17 40 40 H 1.08004 * 120.09389 * 1.01295 * 24 23 21 41 41 H 1.08003 * 120.11618 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.73267 * 179.71524 * 26 25 24 43 43 H 1.08003 * 119.75515 * 180.14054 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8890 -1.1367 5 6 4.6432 0.9818 -1.0667 6 6 5.1302 1.8664 -2.2161 7 6 6.6279 2.0134 -2.1372 8 1 7.1869 1.4576 -1.3988 9 6 7.2847 2.8573 -3.0074 10 7 6.6042 3.5338 -3.9068 11 14 9.1412 3.0400 -2.9089 12 1 9.7813 1.7198 -3.1379 13 1 9.5998 3.9995 -3.9455 14 1 9.5181 3.5465 -1.5649 15 6 5.2142 -0.3920 -1.2458 16 6 4.6565 -1.2306 -2.1974 17 6 5.1644 -2.4996 -2.3976 18 6 6.2407 -2.9516 -1.6538 19 6 6.8087 -2.1309 -0.7014 20 6 6.2939 -0.8508 -0.4929 21 6 6.8921 0.0272 0.5375 22 8 7.9957 -0.2001 0.9936 23 6 6.1001 1.1914 0.9937 24 6 6.4292 1.8324 2.1886 25 6 5.6764 2.9040 2.6219 26 6 4.5984 3.3363 1.8687 27 6 4.2736 2.7071 0.6825 28 6 5.0208 1.6316 0.2294 29 1 2.9718 -1.0169 -0.1431 30 1 2.9712 0.3857 0.9529 31 1 2.6881 1.8861 -1.0390 32 1 2.8233 0.4589 -2.0939 33 1 4.8598 1.4077 -3.1673 34 1 4.6642 2.8488 -2.1411 35 1 7.0661 4.1278 -4.5188 36 1 3.8181 -0.8898 -2.7867 37 1 4.7184 -3.1441 -3.1406 38 1 6.6321 -3.9451 -1.8157 39 1 7.6488 -2.4783 -0.1185 40 1 7.2709 1.4905 2.7726 41 1 5.9270 3.4041 3.5458 42 1 4.0067 4.1725 2.2110 43 1 3.4313 3.0562 0.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001606327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:22 Heat of formation + Delta-G solvation = 34.852775 kcal Electronic energy + Delta-G solvation = -28645.274686 eV Core-core repulsion = 25005.804502 eV Total energy + Delta-G solvation = -3639.470184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.131 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02268 -38.34165 -38.21226 -36.76076 -35.68922 -32.93402 -32.06750 -30.82422 -30.63650 -29.92021 -28.88278 -26.18581 -24.24094 -23.57676 -22.64575 -22.45488 -21.50018 -19.68095 -18.65029 -17.61567 -17.37146 -16.57440 -16.02867 -15.36607 -15.07650 -14.87505 -14.67842 -14.53592 -14.48320 -14.07276 -13.74812 -13.57614 -13.35892 -13.32219 -13.17011 -12.57710 -12.53951 -12.30327 -12.00872 -11.95573 -11.72403 -11.63716 -11.57560 -11.35813 -11.24157 -10.91212 -10.70485 -10.64647 -10.39776 -10.33410 -9.75150 -9.27915 -9.24677 -8.68027 -8.59194 -8.48258 -8.40717 -8.15710 -6.10659 -4.11954 0.82508 1.55357 1.67218 1.70807 2.79837 2.83083 3.00576 3.32028 3.34671 3.41657 4.00973 4.01594 4.22933 4.37416 4.41344 4.78814 4.80059 5.07644 5.11217 5.20836 5.22743 5.27248 5.28399 5.34043 5.43257 5.46747 5.54415 5.63624 5.67711 5.79895 5.85366 6.00827 6.11035 6.14726 6.20299 6.26191 6.28627 6.45986 6.57661 6.66585 6.72475 6.77332 6.78130 6.82147 7.15385 7.22504 7.40531 7.45577 7.59871 7.84546 7.95146 8.20687 8.90245 9.53480 10.99968 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008775 B = 0.006252 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.947125 B = 4477.145947 C = 4997.661955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.216 3.784 3 C -0.036 4.036 4 C -0.108 4.108 5 C 0.007 3.993 6 C 0.045 3.955 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.067 3.933 10 N -0.892 5.892 11 Si 0.880 3.120 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.021 3.979 16 C -0.133 4.133 17 C -0.089 4.089 18 C -0.146 4.146 19 C -0.065 4.065 20 C -0.153 4.153 21 C 0.450 3.550 22 O -0.464 6.464 23 C -0.152 4.152 24 C -0.065 4.065 25 C -0.146 4.146 26 C -0.089 4.089 27 C -0.132 4.132 28 C 0.024 3.976 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -7.373 8.098 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.101 4.101 3 C -0.076 4.076 4 C -0.146 4.146 5 C 0.007 3.993 6 C 0.009 3.991 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.135 4.135 10 N -0.530 5.530 11 Si 0.708 3.292 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.020 3.980 16 C -0.151 4.151 17 C -0.108 4.108 18 C -0.164 4.164 19 C -0.083 4.083 20 C -0.154 4.154 21 C 0.331 3.669 22 O -0.341 6.341 23 C -0.153 4.153 24 C -0.083 4.083 25 C -0.164 4.164 26 C -0.107 4.107 27 C -0.150 4.150 28 C 0.024 3.976 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.260 -7.358 8.184 12.661 hybrid contribution 1.772 0.375 -0.252 1.828 sum -4.488 -6.984 7.932 11.482 Atomic orbital electron populations 1.81192 1.13094 1.09291 1.09172 1.29305 0.95289 0.92746 0.92779 1.19557 0.81222 1.04019 1.02825 1.21889 0.94548 1.00413 0.97778 1.18523 0.92678 0.92452 0.95682 1.19286 0.96841 0.93504 0.89507 1.21063 0.91667 1.25537 1.17221 0.92539 1.24850 0.97941 0.95446 0.95231 1.69915 1.35605 1.27897 1.19621 0.86806 0.86224 0.78200 0.77962 1.20060 1.21169 1.20045 1.19607 0.92099 0.93362 0.92905 1.21110 1.01545 0.93859 0.98566 1.21194 0.95735 0.95814 0.98010 1.21000 0.97737 1.00000 0.97619 1.21176 0.97785 0.92629 0.96684 1.20017 0.98858 0.95912 1.00580 1.20480 0.84997 0.82609 0.78797 1.90539 1.19261 1.71109 1.53229 1.19988 0.98538 0.99475 0.97332 1.21159 0.97903 0.94385 0.94855 1.20992 0.96781 0.97908 1.00707 1.21190 0.96568 0.98440 0.94531 1.21105 1.01048 0.96223 0.96618 1.19555 0.91670 0.94032 0.92347 0.87289 0.87279 0.89842 0.89815 0.95384 0.94646 0.92836 0.85334 0.86097 0.86007 0.85546 0.85582 0.86031 0.86143 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.61 18.54 42.15 0.78 -5.83 16 2 C 0.22 2.63 15.43 -20.76 -0.32 2.31 16 3 C -0.04 -0.38 5.16 -29.52 -0.15 -0.53 16 4 C -0.11 -1.35 3.31 -26.73 -0.09 -1.44 16 5 C 0.01 0.11 0.21 -157.64 -0.03 0.08 16 6 C 0.05 0.98 3.78 -27.88 -0.11 0.87 16 7 C -0.52 -13.18 7.93 -34.44 -0.27 -13.45 16 8 H 0.06 1.47 4.77 -52.48 -0.25 1.22 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 11 Si 0.88 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 C 0.02 0.33 3.19 -104.49 -0.33 0.00 16 16 C -0.13 -1.86 8.19 -39.49 -0.32 -2.18 16 17 C -0.09 -1.12 10.02 -39.55 -0.40 -1.52 16 18 C -0.15 -1.88 10.05 -39.62 -0.40 -2.28 16 19 C -0.06 -0.99 9.61 -39.20 -0.38 -1.37 16 20 C -0.15 -2.65 5.37 -104.98 -0.56 -3.21 16 21 C 0.45 8.55 5.50 -31.58 -0.17 8.38 16 22 O -0.46 -9.62 16.79 5.31 0.09 -9.53 16 23 C -0.15 -2.68 5.37 -104.98 -0.56 -3.24 16 24 C -0.06 -1.02 9.61 -39.21 -0.38 -1.39 16 25 C -0.15 -1.95 10.06 -39.62 -0.40 -2.35 16 26 C -0.09 -1.17 10.02 -39.55 -0.40 -1.56 16 27 C -0.13 -1.92 8.36 -39.49 -0.33 -2.25 16 28 C 0.02 0.40 2.95 -104.49 -0.31 0.09 16 29 H 0.11 1.05 6.88 -51.93 -0.36 0.69 16 30 H 0.11 1.10 6.70 -51.93 -0.35 0.75 16 31 H 0.08 1.00 6.26 -51.93 -0.33 0.68 16 32 H 0.08 0.98 6.32 -51.93 -0.33 0.65 16 33 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 34 H 0.04 0.81 8.05 -51.93 -0.42 0.40 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.13 1.58 6.31 -52.49 -0.33 1.25 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.83 7.78 -52.49 -0.41 1.43 16 40 H 0.13 1.87 7.78 -52.48 -0.41 1.46 16 41 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.65 6.27 -52.48 -0.33 1.33 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -31.38 354.68 -8.82 -40.20 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.74 Total: 0.74 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -6.01 Total: -23.33 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 1.52 Total: -30.05 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.38 -8.82 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001606327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.054 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds