Wall clock time and date at job start Tue Mar 31 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47215 * 128.00276 * 3 2 1 5 5 C 1.53004 * 109.47326 * 175.40292 * 4 3 2 6 6 C 1.52998 * 108.54713 * 179.64849 * 5 4 3 7 7 C 1.50700 * 109.47289 * 177.93792 * 6 5 4 8 8 H 1.08006 * 119.99906 * 5.25799 * 7 6 5 9 9 C 1.37875 * 120.00469 * 185.25974 * 7 6 5 10 10 N 1.31515 * 119.99771 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00182 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47067 * 60.00208 * 11 9 7 13 13 H 1.48504 * 109.47040 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47245 * 299.99983 * 11 9 7 15 15 C 1.49844 * 108.59832 * 61.75183 * 5 4 3 16 16 C 1.38559 * 118.91878 * 41.25588 * 15 5 4 17 17 C 1.38152 * 120.49865 * 179.45274 * 16 15 5 18 18 C 1.38417 * 120.52643 * 359.80116 * 17 16 15 19 19 C 1.37952 * 119.79273 * 0.22814 * 18 17 16 20 20 C 1.39388 * 122.16610 * 220.80838 * 15 5 4 21 21 C 1.48004 * 119.59316 * 1.08951 * 20 15 5 22 22 O 1.21559 * 121.14933 * 196.92084 * 21 20 15 23 23 C 1.48010 * 117.70665 * 16.93821 * 21 20 15 24 24 C 1.39529 * 119.94389 * 162.58124 * 23 21 20 25 25 C 1.37943 * 119.81552 * 181.01606 * 24 23 21 26 26 C 1.38424 * 119.77882 * 0.03813 * 25 24 23 27 27 C 1.38148 * 120.53458 * 359.69072 * 26 25 24 28 28 C 1.38573 * 120.49483 * 0.11601 * 27 26 25 29 29 H 1.09005 * 109.47317 * 8.00437 * 3 2 1 30 30 H 1.09001 * 109.47343 * 248.00746 * 3 2 1 31 31 H 1.09001 * 109.46860 * 55.40149 * 4 3 2 32 32 H 1.08998 * 109.47480 * 295.40622 * 4 3 2 33 33 H 1.08998 * 109.47118 * 297.93697 * 6 5 4 34 34 H 1.08997 * 109.47165 * 57.93254 * 6 5 4 35 35 H 0.96997 * 120.00342 * 179.97438 * 10 9 7 36 36 H 1.08001 * 119.75033 * 359.42367 * 16 15 5 37 37 H 1.07993 * 119.73653 * 179.82220 * 17 16 15 38 38 H 1.07997 * 120.10560 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.10218 * 180.02562 * 19 18 17 40 40 H 1.08004 * 120.09389 * 1.01295 * 24 23 21 41 41 H 1.08003 * 120.11618 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.73267 * 179.71524 * 26 25 24 43 43 H 1.08003 * 119.75515 * 180.14054 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8890 -1.1367 5 6 4.6432 0.9818 -1.0667 6 6 5.1302 1.8664 -2.2161 7 6 6.6279 2.0134 -2.1372 8 1 7.1869 1.4576 -1.3988 9 6 7.2847 2.8573 -3.0074 10 7 6.6042 3.5338 -3.9068 11 14 9.1412 3.0400 -2.9089 12 1 9.7813 1.7198 -3.1379 13 1 9.5998 3.9995 -3.9455 14 1 9.5181 3.5465 -1.5649 15 6 5.2142 -0.3920 -1.2458 16 6 4.6565 -1.2306 -2.1974 17 6 5.1644 -2.4996 -2.3976 18 6 6.2407 -2.9516 -1.6538 19 6 6.8087 -2.1309 -0.7014 20 6 6.2939 -0.8508 -0.4929 21 6 6.8921 0.0272 0.5375 22 8 7.9957 -0.2001 0.9936 23 6 6.1001 1.1914 0.9937 24 6 6.4292 1.8324 2.1886 25 6 5.6764 2.9040 2.6219 26 6 4.5984 3.3363 1.8687 27 6 4.2736 2.7071 0.6825 28 6 5.0208 1.6316 0.2294 29 1 2.9718 -1.0169 -0.1431 30 1 2.9712 0.3857 0.9529 31 1 2.6881 1.8861 -1.0390 32 1 2.8233 0.4589 -2.0939 33 1 4.8598 1.4077 -3.1673 34 1 4.6642 2.8488 -2.1411 35 1 7.0661 4.1278 -4.5188 36 1 3.8181 -0.8898 -2.7867 37 1 4.7184 -3.1441 -3.1406 38 1 6.6321 -3.9451 -1.8157 39 1 7.6488 -2.4783 -0.1185 40 1 7.2709 1.4905 2.7726 41 1 5.9270 3.4041 3.5458 42 1 4.0067 4.1725 2.2110 43 1 3.4313 3.0562 0.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001606327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:21 Heat of formation + Delta-G solvation = 20.278999 kcal Electronic energy + Delta-G solvation = -28645.906653 eV Core-core repulsion = 25005.804502 eV Total energy + Delta-G solvation = -3640.102151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.131 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.23808 -39.56663 -39.45384 -37.83064 -36.88404 -34.77581 -33.28609 -31.95087 -31.83866 -31.03825 -30.31957 -27.72198 -25.46299 -24.67734 -24.14629 -23.77858 -22.62966 -20.92657 -19.78690 -18.78146 -18.46065 -18.34108 -17.37190 -16.63705 -16.47561 -16.05756 -15.95677 -15.72555 -15.64053 -15.49501 -14.88861 -14.70913 -14.55734 -14.51993 -14.45781 -14.23160 -13.73437 -13.54127 -13.23151 -13.15483 -13.03055 -13.01642 -12.82274 -12.71278 -12.57863 -12.37986 -12.31687 -11.85175 -11.77304 -11.63203 -11.33923 -11.02158 -10.61661 -10.49632 -9.86767 -9.71556 -9.59067 -9.36301 -8.17592 -6.19295 -0.42464 0.40724 0.54182 0.56142 1.31755 1.33705 1.41209 1.76598 1.81801 1.86775 2.38926 2.87454 3.01269 3.04818 3.14988 3.20013 3.65298 3.66485 3.99449 4.02966 4.19284 4.22969 4.24504 4.34045 4.39386 4.40106 4.54171 4.57645 4.61107 4.77288 4.82217 4.89305 4.93478 5.02946 5.08501 5.18840 5.19698 5.24133 5.45592 5.50221 5.56962 5.58461 5.62378 5.64483 5.67326 5.78620 5.85315 6.09061 6.14771 6.27185 6.59723 6.64420 6.91887 7.46944 8.93033 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008775 B = 0.006252 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.947125 B = 4477.145947 C = 4997.661955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.243 3.757 3 C -0.023 4.023 4 C -0.104 4.104 5 C 0.016 3.984 6 C 0.054 3.946 7 C -0.511 4.511 8 H 0.047 0.953 9 C 0.023 3.977 10 N -0.919 5.919 11 Si 0.917 3.083 12 H -0.280 1.280 13 H -0.278 1.278 14 H -0.281 1.281 15 C 0.006 3.994 16 C -0.139 4.139 17 C -0.081 4.081 18 C -0.138 4.138 19 C -0.081 4.081 20 C -0.181 4.181 21 C 0.439 3.561 22 O -0.502 6.502 23 C -0.180 4.180 24 C -0.081 4.081 25 C -0.139 4.139 26 C -0.083 4.083 27 C -0.140 4.140 28 C 0.010 3.990 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.015 0.985 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -8.014 8.334 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.073 4.073 3 C -0.063 4.063 4 C -0.142 4.142 5 C 0.016 3.984 6 C 0.017 3.983 7 C -0.549 4.549 8 H 0.065 0.935 9 C -0.176 4.176 10 N -0.560 5.560 11 Si 0.745 3.255 12 H -0.205 1.205 13 H -0.203 1.203 14 H -0.207 1.207 15 C 0.005 3.995 16 C -0.156 4.156 17 C -0.098 4.098 18 C -0.156 4.156 19 C -0.099 4.099 20 C -0.182 4.182 21 C 0.323 3.677 22 O -0.384 6.384 23 C -0.181 4.181 24 C -0.100 4.100 25 C -0.157 4.157 26 C -0.100 4.100 27 C -0.157 4.157 28 C 0.009 3.991 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.172 0.828 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.678 -8.001 8.419 13.923 hybrid contribution 2.239 0.534 -0.281 2.319 sum -5.439 -7.467 8.138 12.312 Atomic orbital electron populations 1.81230 1.14362 1.10802 1.10612 1.29373 0.95150 0.91363 0.91423 1.19496 0.79983 1.04431 1.02411 1.21810 0.91817 1.01433 0.99131 1.18297 0.94966 0.91575 0.93547 1.19060 0.94310 0.93711 0.91207 1.21432 0.93971 1.23839 1.15665 0.93472 1.25384 1.00299 0.96163 0.95763 1.69977 1.36323 1.29063 1.20605 0.86231 0.83759 0.77897 0.77636 1.20545 1.20323 1.20690 1.19680 0.92269 0.93708 0.93819 1.21422 1.01985 0.94281 0.97939 1.21644 0.94888 0.95508 0.97786 1.21388 0.97233 1.00863 0.96096 1.21358 0.98180 0.92609 0.97749 1.20130 0.99993 0.96742 1.01301 1.21004 0.84677 0.83239 0.78739 1.90492 1.20693 1.72307 1.54873 1.20133 0.99370 0.99950 0.98674 1.21353 0.98541 0.95377 0.94696 1.21373 0.96000 0.96699 1.01626 1.21628 0.96251 0.98621 0.93531 1.21406 1.01287 0.95649 0.97393 1.19657 0.91900 0.94965 0.92545 0.85893 0.86470 0.89270 0.88769 0.96683 0.96328 0.93019 0.83541 0.82416 0.82828 0.85837 0.85804 0.82880 0.82642 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.63 18.54 20.01 0.37 -13.26 16 2 C 0.24 5.38 15.43 89.44 1.38 6.76 16 3 C -0.02 -0.44 5.16 28.79 0.15 -0.29 16 4 C -0.10 -2.39 3.31 30.60 0.10 -2.29 16 5 C 0.02 0.52 0.21 -54.21 -0.01 0.51 16 6 C 0.05 2.33 3.78 29.85 0.11 2.44 16 7 C -0.51 -26.38 7.93 25.60 0.20 -26.18 16 8 H 0.05 2.51 4.77 -2.91 -0.01 2.50 16 9 C 0.02 1.23 5.46 84.65 0.46 1.70 16 10 N -0.92 -51.97 13.29 21.45 0.28 -51.69 16 11 Si 0.92 45.00 29.54 68.60 2.03 47.03 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 15 C 0.01 0.18 3.19 -19.78 -0.06 0.11 16 16 C -0.14 -3.56 8.19 22.33 0.18 -3.38 16 17 C -0.08 -1.75 10.02 22.29 0.22 -1.53 16 18 C -0.14 -3.23 10.05 22.24 0.22 -3.01 16 19 C -0.08 -2.46 9.61 22.52 0.22 -2.24 16 20 C -0.18 -6.33 5.37 -20.10 -0.11 -6.44 16 21 C 0.44 17.33 5.50 27.46 0.15 17.48 16 22 O -0.50 -22.05 16.79 -3.90 -0.07 -22.12 16 23 C -0.18 -6.44 5.37 -20.10 -0.11 -6.54 16 24 C -0.08 -2.55 9.61 22.51 0.22 -2.34 16 25 C -0.14 -3.44 10.06 22.24 0.22 -3.22 16 26 C -0.08 -1.93 10.02 22.29 0.22 -1.71 16 27 C -0.14 -3.81 8.36 22.33 0.19 -3.62 16 28 C 0.01 0.31 2.95 -19.78 -0.06 0.25 16 29 H 0.12 2.04 6.88 -2.38 -0.02 2.03 16 30 H 0.12 2.10 6.70 -2.39 -0.02 2.09 16 31 H 0.09 1.95 6.26 -2.39 -0.01 1.94 16 32 H 0.09 1.97 6.32 -2.39 -0.02 1.96 16 33 H 0.01 0.68 7.95 -2.39 -0.02 0.66 16 34 H 0.02 0.85 8.05 -2.39 -0.02 0.84 16 35 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.15 3.17 6.31 -2.91 -0.02 3.15 16 37 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.12 3.69 7.78 -2.91 -0.02 3.67 16 40 H 0.12 3.80 7.78 -2.91 -0.02 3.78 16 41 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.14 3.38 6.27 -2.91 -0.02 3.37 16 Total: -1.00 -70.40 354.68 7.58 -62.81 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.06 Total: 10.76 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 3.91 Total: -33.54 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.66 Total: -64.95 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.07 Total: -22.12 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.40 7.58 -62.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001606327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.094 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds