Wall clock time and date at job start Tue Mar 31 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 C 1.50700 * 109.47127 * 119.99724 * 2 1 3 5 5 C 1.38130 * 120.03869 * 299.26536 * 4 2 1 6 6 C 1.38263 * 120.06848 * 180.27498 * 5 4 2 7 7 C 1.38305 * 120.14694 * 359.74538 * 6 5 4 8 8 C 1.38091 * 120.07025 * 359.97438 * 7 6 5 9 9 C 1.38867 * 120.03500 * 119.03210 * 4 2 1 10 10 N 1.39896 * 120.06843 * 0.02562 * 9 4 2 11 11 C 1.34780 * 120.00043 * 135.04020 * 10 9 4 12 12 S 1.71208 * 119.99701 * 354.49483 * 11 10 9 13 13 N 1.34775 * 120.00115 * 174.21235 * 11 10 9 14 14 C 1.46494 * 119.99852 * 180.27964 * 13 11 10 15 15 C 1.50698 * 109.47232 * 90.00065 * 14 13 11 16 16 H 1.08000 * 120.00452 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00087 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00212 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47354 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47150 * 120.00049 * 19 17 15 22 22 H 1.48502 * 109.47012 * 239.99828 * 19 17 15 23 23 C 1.46493 * 119.99972 * 0.27781 * 13 11 10 24 24 C 1.53000 * 109.47207 * 90.00030 * 23 13 11 25 25 C 1.47202 * 109.47429 * 179.97438 * 24 23 13 26 26 N 5.92143 * 91.17593 * 243.28344 * 2 1 3 27 27 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47076 * 300.00151 * 1 2 3 29 29 H 1.09003 * 109.47366 * 60.00158 * 1 2 3 30 30 H 1.08996 * 109.47132 * 240.00406 * 2 1 3 31 31 H 1.09006 * 109.47415 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47356 * 300.00007 * 3 2 1 33 33 H 1.09006 * 109.47296 * 59.99984 * 3 2 1 34 34 H 1.08001 * 119.96560 * 0.02562 * 5 4 2 35 35 H 1.08005 * 119.92484 * 179.76368 * 6 5 4 36 36 H 1.07998 * 119.96555 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03814 * 180.02562 * 8 7 6 38 38 H 0.97002 * 120.00451 * 315.04406 * 10 9 4 39 39 H 1.08998 * 109.47146 * 210.00195 * 14 13 11 40 40 H 1.09000 * 109.47286 * 330.00130 * 14 13 11 41 41 H 0.96993 * 120.00379 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.47326 * 209.99996 * 23 13 11 43 43 H 1.09001 * 109.47146 * 330.00375 * 23 13 11 44 44 H 1.09005 * 109.46950 * 300.00196 * 24 23 13 45 45 H 1.08999 * 109.47316 * 59.99582 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7117 -0.2303 2.4854 6 6 2.1769 -0.8782 3.6147 7 6 2.9601 -2.0116 3.4921 8 6 3.2794 -2.5000 2.2406 9 6 2.8141 -1.8511 1.1041 10 7 3.1370 -2.3424 -0.1653 11 6 4.3993 -2.7283 -0.4375 12 16 5.6368 -2.4869 0.7208 13 7 4.6864 -3.3093 -1.6192 14 6 6.0573 -3.7343 -1.9126 15 6 6.2518 -5.1562 -1.4527 16 1 5.4359 -5.6898 -0.9879 17 6 7.4713 -5.7759 -1.6252 18 7 8.4650 -5.1261 -2.1907 19 14 7.7121 -7.5387 -1.0558 20 1 6.4503 -8.0417 -0.4556 21 1 8.0816 -8.3877 -2.2166 22 1 8.7959 -7.5876 -0.0418 23 6 3.6276 -3.5159 -2.6103 24 6 3.5388 -2.2923 -3.5244 25 6 2.4752 -2.5001 -4.5206 26 7 1.6515 -2.6616 -5.2882 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.1002 0.6545 2.5845 35 1 1.9280 -0.4986 4.5947 36 1 3.3216 -2.5156 4.3762 37 1 3.8907 -3.3852 2.1455 38 1 2.4524 -2.4053 -0.8497 39 1 6.2351 -3.6722 -2.9862 40 1 6.7590 -3.0843 -1.3899 41 1 9.3228 -5.5621 -2.3124 42 1 3.8555 -4.3993 -3.2068 43 1 2.6749 -3.6580 -2.0999 44 1 3.3108 -1.4089 -2.9278 45 1 4.4913 -2.1500 -4.0347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003228929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:28 Heat of formation + Delta-G solvation = 70.910387 kcal Electronic energy + Delta-G solvation = -26095.318927 eV Core-core repulsion = 22625.149021 eV Total energy + Delta-G solvation = -3470.169906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.41078 -38.76380 -36.80839 -35.48912 -35.30314 -32.95995 -31.73467 -29.90652 -29.43759 -27.30889 -27.22797 -25.51129 -23.82270 -23.47574 -21.84491 -20.91326 -19.98355 -18.36196 -17.97733 -17.44483 -16.60003 -16.07549 -15.46616 -15.39989 -15.06397 -14.72077 -14.37391 -14.13668 -14.03078 -13.84073 -13.66458 -13.58672 -13.12746 -12.81205 -12.65540 -12.55946 -12.35456 -12.12892 -12.07762 -11.80944 -11.68611 -11.47389 -11.30331 -11.24157 -11.01047 -10.81314 -10.77946 -10.67836 -10.38099 -10.21138 -9.96499 -9.07394 -8.64323 -8.51655 -8.01527 -7.00932 -6.34232 -6.13592 -4.17514 1.25326 1.58111 2.06836 2.41534 2.57487 2.60618 3.18073 3.27000 3.36304 3.37894 3.43707 3.92110 3.97616 4.38696 4.54277 4.58557 4.65562 4.70094 5.01451 5.03594 5.13771 5.19542 5.23184 5.26051 5.41879 5.43399 5.44496 5.56874 5.65411 5.67065 5.76115 5.76893 5.81614 6.03768 6.09981 6.13672 6.27385 6.45331 6.61996 6.65569 6.77407 7.03867 7.12213 7.33502 7.35168 7.42658 7.76853 7.81058 8.03783 8.81180 9.46320 10.95000 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004481 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.492937 B = 6247.477112 C = 8199.504581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.088 4.088 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.066 4.066 9 C 0.149 3.851 10 N -0.653 5.653 11 C 0.552 3.448 12 S -0.614 6.614 13 N -0.535 5.535 14 C 0.236 3.764 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.070 3.930 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.281 1.281 23 C 0.096 3.904 24 C -0.048 4.048 25 C 0.212 3.788 26 N -0.432 5.432 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.397 0.603 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.264 0.736 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.542 10.172 3.878 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.091 4.091 5 C -0.135 4.135 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.088 4.088 9 C 0.055 3.945 10 N -0.283 5.283 11 C 0.196 3.804 12 S -0.480 6.480 13 N -0.240 5.240 14 C 0.118 3.882 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.133 4.133 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.207 1.207 23 C -0.033 4.033 24 C -0.090 4.090 25 C -0.106 4.106 26 N -0.109 5.109 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.236 0.764 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.638 9.977 3.276 18.837 hybrid contribution -0.277 -1.108 -0.406 1.212 sum -15.916 8.869 2.870 18.444 Atomic orbital electron populations 1.21875 0.94371 1.01909 1.01972 1.20012 0.95637 0.96416 0.95230 1.21823 1.01752 0.94629 1.01669 1.19578 1.00793 0.93457 0.95292 1.20603 1.01472 1.00177 0.91246 1.21068 0.98438 0.96251 0.98159 1.20932 0.98822 0.97134 0.96968 1.21357 0.96072 1.00467 0.90894 1.17147 0.99865 0.94046 0.83449 1.42407 1.08033 1.64386 1.13495 1.22430 0.87716 0.81382 0.88826 1.93247 1.39589 1.74152 1.41047 1.47856 1.13124 1.51938 1.11037 1.20073 0.73378 0.97341 0.97426 1.21133 0.97926 0.96425 1.40585 0.92405 1.24805 0.95428 0.98266 0.94844 1.69910 1.02830 1.37028 1.42907 0.86434 0.78389 0.84150 0.78393 1.19875 1.21118 1.20707 1.21667 0.91934 0.98152 0.91501 1.19794 0.94920 1.00800 0.93507 1.28937 0.94001 0.93552 0.94131 1.81301 1.11031 1.08165 1.10386 0.92698 0.92207 0.92502 0.91420 0.92131 0.92625 0.92348 0.86287 0.86441 0.85973 0.84120 0.76398 0.94112 0.90045 0.92603 0.86909 0.90672 0.87582 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.01 37.16 0.33 -0.79 16 2 C -0.05 -0.51 3.02 -91.77 -0.28 -0.79 16 3 C -0.14 -1.27 9.00 37.16 0.33 -0.94 16 4 C -0.09 -1.02 4.80 -104.43 -0.50 -1.52 16 5 C -0.12 -1.24 8.71 -39.61 -0.35 -1.59 16 6 C -0.12 -1.33 10.04 -39.55 -0.40 -1.73 16 7 C -0.12 -1.52 10.04 -39.61 -0.40 -1.92 16 8 C -0.07 -1.00 7.88 -39.39 -0.31 -1.31 16 9 C 0.15 2.07 5.80 -83.70 -0.49 1.58 16 10 N -0.65 -8.83 4.40 -11.40 -0.05 -8.88 16 11 C 0.55 9.64 7.46 -86.92 -0.65 8.99 16 12 S -0.61 -13.73 24.71 -107.50 -2.66 -16.39 16 13 N -0.54 -9.00 2.46 -177.09 -0.43 -9.43 16 14 C 0.24 5.20 4.92 -5.20 -0.03 5.17 16 15 C -0.52 -13.18 9.39 -34.44 -0.32 -13.51 16 16 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.10 1.14 5.08 -4.05 -0.02 1.12 16 24 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 25 C 0.21 2.28 15.44 -20.71 -0.32 1.96 16 26 N -0.43 -5.80 18.55 42.21 0.78 -5.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 7.43 -51.93 -0.39 0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.63 6.31 -51.93 -0.33 0.30 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.48 7.35 -51.93 -0.38 0.10 16 34 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.14 2.49 6.57 -52.49 -0.34 2.15 16 38 H 0.40 4.18 5.57 -40.82 -0.23 3.95 16 39 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.08 2.09 6.58 -51.93 -0.34 1.74 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.11 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 44 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -31.94 386.92 -10.95 -42.89 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.48 Total: 3.09 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.66 Total: -4.14 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.03 Total: -47.17 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -13.73 SS G_CDS: -2.66 Total: -16.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.94 -10.95 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003228929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.799 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds