Wall clock time and date at job start Tue Mar 31 2020 05:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 C 1.50700 * 109.47127 * 119.99724 * 2 1 3 5 5 C 1.38130 * 120.03869 * 299.26536 * 4 2 1 6 6 C 1.38263 * 120.06848 * 180.27498 * 5 4 2 7 7 C 1.38305 * 120.14694 * 359.74538 * 6 5 4 8 8 C 1.38091 * 120.07025 * 359.97438 * 7 6 5 9 9 C 1.38867 * 120.03500 * 119.03210 * 4 2 1 10 10 N 1.39896 * 120.06843 * 0.02562 * 9 4 2 11 11 C 1.34780 * 120.00043 * 135.04020 * 10 9 4 12 12 S 1.71208 * 119.99701 * 354.49483 * 11 10 9 13 13 N 1.34775 * 120.00115 * 174.21235 * 11 10 9 14 14 C 1.46494 * 119.99852 * 180.27964 * 13 11 10 15 15 C 1.50698 * 109.47232 * 90.00065 * 14 13 11 16 16 H 1.08000 * 120.00452 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00087 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00212 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47354 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47150 * 120.00049 * 19 17 15 22 22 H 1.48502 * 109.47012 * 239.99828 * 19 17 15 23 23 C 1.46493 * 119.99972 * 0.27781 * 13 11 10 24 24 C 1.53000 * 109.47207 * 90.00030 * 23 13 11 25 25 C 1.47202 * 109.47429 * 179.97438 * 24 23 13 26 26 N 5.92143 * 91.17593 * 243.28344 * 2 1 3 27 27 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47076 * 300.00151 * 1 2 3 29 29 H 1.09003 * 109.47366 * 60.00158 * 1 2 3 30 30 H 1.08996 * 109.47132 * 240.00406 * 2 1 3 31 31 H 1.09006 * 109.47415 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47356 * 300.00007 * 3 2 1 33 33 H 1.09006 * 109.47296 * 59.99984 * 3 2 1 34 34 H 1.08001 * 119.96560 * 0.02562 * 5 4 2 35 35 H 1.08005 * 119.92484 * 179.76368 * 6 5 4 36 36 H 1.07998 * 119.96555 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03814 * 180.02562 * 8 7 6 38 38 H 0.97002 * 120.00451 * 315.04406 * 10 9 4 39 39 H 1.08998 * 109.47146 * 210.00195 * 14 13 11 40 40 H 1.09000 * 109.47286 * 330.00130 * 14 13 11 41 41 H 0.96993 * 120.00379 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.47326 * 209.99996 * 23 13 11 43 43 H 1.09001 * 109.47146 * 330.00375 * 23 13 11 44 44 H 1.09005 * 109.46950 * 300.00196 * 24 23 13 45 45 H 1.08999 * 109.47316 * 59.99582 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7117 -0.2303 2.4854 6 6 2.1769 -0.8782 3.6147 7 6 2.9601 -2.0116 3.4921 8 6 3.2794 -2.5000 2.2406 9 6 2.8141 -1.8511 1.1041 10 7 3.1370 -2.3424 -0.1653 11 6 4.3993 -2.7283 -0.4375 12 16 5.6368 -2.4869 0.7208 13 7 4.6864 -3.3093 -1.6192 14 6 6.0573 -3.7343 -1.9126 15 6 6.2518 -5.1562 -1.4527 16 1 5.4359 -5.6898 -0.9879 17 6 7.4713 -5.7759 -1.6252 18 7 8.4650 -5.1261 -2.1907 19 14 7.7121 -7.5387 -1.0558 20 1 6.4503 -8.0417 -0.4556 21 1 8.0816 -8.3877 -2.2166 22 1 8.7959 -7.5876 -0.0418 23 6 3.6276 -3.5159 -2.6103 24 6 3.5388 -2.2923 -3.5244 25 6 2.4752 -2.5001 -4.5206 26 7 1.6515 -2.6616 -5.2882 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.1002 0.6545 2.5845 35 1 1.9280 -0.4986 4.5947 36 1 3.3216 -2.5156 4.3762 37 1 3.8907 -3.3852 2.1455 38 1 2.4524 -2.4053 -0.8497 39 1 6.2351 -3.6722 -2.9862 40 1 6.7590 -3.0843 -1.3899 41 1 9.3228 -5.5621 -2.3124 42 1 3.8555 -4.3993 -3.2068 43 1 2.6749 -3.6580 -2.0999 44 1 3.3108 -1.4089 -2.9278 45 1 4.4913 -2.1500 -4.0347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003228929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:27 Heat of formation + Delta-G solvation = 55.693279 kcal Electronic energy + Delta-G solvation = -26095.978790 eV Core-core repulsion = 22625.149021 eV Total energy + Delta-G solvation = -3470.829770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54221 -39.94422 -37.78938 -36.61001 -36.24285 -34.76551 -32.92881 -30.95714 -30.55078 -28.86452 -27.93255 -26.65594 -25.39227 -24.50563 -23.04385 -22.17198 -20.86049 -19.55837 -19.04029 -18.76103 -18.30685 -17.30348 -16.61489 -16.39279 -16.31015 -16.13702 -15.59490 -15.35166 -14.95787 -14.85174 -14.55289 -14.51325 -14.41282 -13.94361 -13.77146 -13.75160 -13.35893 -13.25806 -13.00848 -12.89311 -12.83220 -12.73846 -12.64476 -12.49044 -12.25993 -12.06249 -12.01337 -11.96325 -11.77994 -11.51615 -11.50031 -10.56218 -10.45375 -9.65355 -9.18304 -8.66914 -8.15712 -8.01447 -6.24268 0.07815 0.59515 0.82151 1.05665 1.39617 1.44779 1.51782 1.58590 1.70682 1.76946 2.28489 2.45002 2.94654 2.99809 3.19329 3.65332 3.73914 3.76937 3.89792 4.20099 4.23404 4.34805 4.36017 4.38982 4.50398 4.58494 4.63043 4.75379 4.78341 4.87010 4.89581 5.01593 5.04264 5.11626 5.23827 5.30681 5.33865 5.37370 5.44399 5.51252 5.63556 5.72134 5.76585 5.82925 5.92064 6.08416 6.21753 6.43540 6.47943 6.80554 7.41937 8.91907 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004481 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.492937 B = 6247.477112 C = 8199.504581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.088 4.088 9 C 0.121 3.879 10 N -0.624 5.624 11 C 0.581 3.419 12 S -0.721 6.721 13 N -0.532 5.532 14 C 0.253 3.747 15 C -0.522 4.522 16 H 0.049 0.951 17 C 0.022 3.978 18 N -0.920 5.920 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.289 1.289 23 C 0.090 3.910 24 C -0.035 4.035 25 C 0.242 3.758 26 N -0.474 5.474 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.416 0.584 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.264 0.736 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.652 11.486 3.603 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.197 4.197 4 C -0.083 4.083 5 C -0.133 4.133 6 C -0.130 4.130 7 C -0.151 4.151 8 C -0.110 4.110 9 C 0.028 3.972 10 N -0.254 5.254 11 C 0.220 3.780 12 S -0.589 6.589 13 N -0.235 5.235 14 C 0.133 3.867 15 C -0.561 4.561 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.559 5.559 19 Si 0.778 3.222 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.216 1.216 23 C -0.036 4.036 24 C -0.077 4.077 25 C -0.076 4.076 26 N -0.151 5.151 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.258 0.742 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.148 0.852 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.841 11.296 2.985 22.170 hybrid contribution 0.552 -1.454 -0.267 1.578 sum -18.289 9.843 2.717 20.946 Atomic orbital electron populations 1.21850 0.92602 1.02180 1.03089 1.20099 0.96985 0.96344 0.93946 1.21814 1.00322 0.94513 1.03048 1.19877 0.99219 0.92226 0.96959 1.21018 1.00985 1.00713 0.90580 1.21430 0.96782 0.94906 0.99929 1.21111 0.99489 0.98152 0.96356 1.21200 0.96902 1.00227 0.92700 1.17335 1.01527 0.95599 0.82755 1.42169 1.06653 1.62461 1.14118 1.21730 0.87821 0.80921 0.87534 1.93450 1.42966 1.78000 1.44464 1.47541 1.12812 1.51355 1.11757 1.19500 0.75352 0.95023 0.96821 1.21381 0.97484 0.97805 1.39465 0.93274 1.25485 0.95505 1.01504 0.95263 1.69997 1.03187 1.38363 1.44399 0.85606 0.77893 0.80693 0.77997 1.19624 1.19934 1.21551 1.21954 0.91157 0.99507 0.91027 1.19714 0.94878 1.00148 0.92913 1.28894 0.93156 0.92212 0.93318 1.81350 1.12519 1.09499 1.11747 0.92860 0.91338 0.91231 0.91341 0.94325 0.91002 0.91337 0.83208 0.83410 0.85311 0.87702 0.74153 0.93464 0.93718 0.92661 0.87078 0.88001 0.85186 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.01 71.98 0.65 -0.95 16 2 C -0.06 -0.85 3.02 -11.54 -0.03 -0.88 16 3 C -0.14 -2.06 9.00 71.98 0.65 -1.42 16 4 C -0.08 -1.67 4.80 -19.74 -0.09 -1.76 16 5 C -0.11 -2.08 8.71 22.25 0.19 -1.89 16 6 C -0.11 -2.20 10.04 22.29 0.22 -1.98 16 7 C -0.13 -3.36 10.04 22.25 0.22 -3.13 16 8 C -0.09 -2.77 7.88 22.39 0.18 -2.59 16 9 C 0.12 3.28 5.80 38.16 0.22 3.51 16 10 N -0.62 -16.22 4.40 -189.97 -0.84 -17.06 16 11 C 0.58 20.41 7.46 179.05 1.34 21.74 16 12 S -0.72 -34.04 24.71 -56.49 -1.40 -35.44 16 13 N -0.53 -17.66 2.46 -714.19 -1.75 -19.42 16 14 C 0.25 11.38 4.92 85.63 0.42 11.81 16 15 C -0.52 -26.87 9.39 25.60 0.24 -26.63 16 16 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 17 C 0.02 1.20 5.46 84.66 0.46 1.66 16 18 N -0.92 -52.00 13.29 21.45 0.28 -51.72 16 19 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 C 0.09 1.94 5.08 86.38 0.44 2.38 16 24 C -0.04 -0.54 6.03 28.79 0.17 -0.37 16 25 C 0.24 4.53 15.44 89.43 1.38 5.91 16 26 N -0.47 -11.72 18.55 20.02 0.37 -11.35 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.68 7.43 -2.38 -0.02 0.66 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.02 6.31 -2.39 -0.02 1.01 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 0.87 7.35 -2.38 -0.02 0.85 16 34 H 0.15 1.84 7.10 -2.91 -0.02 1.82 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.10 4.03 6.57 -2.91 -0.02 4.01 16 38 H 0.42 7.66 5.57 -92.71 -0.52 7.15 16 39 H 0.05 2.07 8.07 -2.39 -0.02 2.06 16 40 H 0.04 2.39 6.58 -2.39 -0.02 2.38 16 41 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.11 2.54 8.07 -2.38 -0.02 2.53 16 43 H 0.10 1.67 6.44 -2.39 -0.02 1.66 16 44 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.03 386.92 5.84 -68.19 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.49 Total: 15.83 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.66 Total: 5.40 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -1.93 Total: -99.54 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -34.04 SS G_CDS: -1.40 Total: -35.44 kcal Total: -74.03 5.84 -68.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003228929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.880 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds