Wall clock time and date at job start Tue Mar 31 2020 05:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32157 * 117.98226 * 2 1 4 4 C 1.34030 * 117.40424 * 180.02562 * 3 2 1 5 5 S 1.74476 * 129.35847 * 179.97438 * 4 3 2 6 6 C 1.75846 * 92.39120 * 180.02562 * 5 4 3 7 7 C 1.33820 * 111.49034 * 359.96405 * 6 5 4 8 8 C 1.40177 * 120.96607 * 359.95467 * 4 3 2 9 9 C 1.42131 * 119.03005 * 0.02562 * 8 4 3 10 10 N 1.38334 * 122.20049 * 179.97438 * 9 8 4 11 11 C 1.46897 * 111.00019 * 115.85761 * 10 9 8 12 12 C 1.46900 * 111.00203 * 239.81718 * 10 9 8 13 13 C 1.50697 * 109.47228 * 169.99707 * 12 10 9 14 14 H 1.07999 * 120.00101 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00025 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00105 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47257 * 89.99685 * 17 15 13 19 19 H 1.48502 * 109.47123 * 209.99720 * 17 15 13 20 20 H 1.48503 * 109.47112 * 329.99520 * 17 15 13 21 21 N 1.31762 * 117.98206 * 179.97438 * 2 1 3 22 22 C 1.52361 * 123.14348 * 180.02562 * 7 6 5 23 23 C 1.52922 * 108.97594 * 17.26177 * 22 7 6 24 24 C 1.53185 * 109.08133 * 309.08441 * 23 22 7 25 25 H 1.08997 * 109.57658 * 310.64485 * 24 23 22 26 26 C 1.52996 * 109.67698 * 190.32797 * 24 23 22 27 27 C 1.51798 * 124.15638 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.46946 * 270.02099 * 1 2 3 29 29 H 1.09001 * 109.46813 * 30.02243 * 1 2 3 30 30 H 1.08999 * 109.46475 * 150.02024 * 1 2 3 31 31 H 1.08997 * 109.46772 * 65.83834 * 11 10 9 32 32 H 1.09001 * 109.46776 * 185.83643 * 11 10 9 33 33 H 1.09001 * 109.47063 * 305.84016 * 11 10 9 34 34 H 1.09000 * 109.46825 * 289.99705 * 12 10 9 35 35 H 1.09005 * 109.47027 * 49.99682 * 12 10 9 36 36 H 0.96999 * 120.00460 * 180.02562 * 16 15 13 37 37 H 1.08992 * 109.54439 * 257.41873 * 22 7 6 38 38 H 1.09002 * 109.64281 * 137.16069 * 22 7 6 39 39 H 1.08999 * 109.53058 * 189.20388 * 23 22 7 40 40 H 1.09000 * 109.53309 * 68.96713 * 23 22 7 41 41 H 1.09008 * 109.47354 * 300.56938 * 26 24 23 42 42 H 1.09003 * 109.47525 * 60.56671 * 26 24 23 43 43 H 1.09001 * 109.47565 * 180.57040 * 26 24 23 44 44 H 1.09001 * 109.56606 * 316.47797 * 27 6 5 45 45 H 1.09001 * 109.56464 * 76.82396 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1271 1.1671 0.0000 4 6 3.4674 1.1535 -0.0005 5 16 4.5874 2.4914 -0.0013 6 6 5.9816 1.4198 -0.0024 7 6 5.6115 0.1338 -0.0014 8 6 4.1765 -0.0556 -0.0001 9 6 3.4533 -1.2792 0.0003 10 7 4.0860 -2.5094 0.0002 11 6 3.7954 -3.2510 1.2345 12 6 3.7132 -3.2931 -1.1850 13 6 4.5972 -4.5098 -1.2812 14 1 5.3594 -4.6837 -0.5361 15 6 4.4322 -5.4014 -2.3198 16 7 3.5030 -5.1905 -3.2262 17 14 5.5275 -6.9100 -2.4386 18 1 4.9008 -8.0361 -1.7007 19 1 5.6981 -7.2867 -3.8649 20 1 6.8543 -6.6064 -1.8447 21 7 2.1253 -1.1636 0.0005 22 6 6.6071 -1.0196 -0.0014 23 6 7.9777 -0.4933 0.4264 24 6 8.3288 0.7349 -0.4190 25 1 8.1727 0.5089 -1.4738 26 6 9.7919 1.1182 -0.1880 27 6 7.4229 1.8964 -0.0040 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 2.7350 -3.5011 1.2669 32 1 4.3857 -4.1671 1.2555 33 1 4.0499 -2.6349 2.0970 34 1 2.6724 -3.6059 -1.1011 35 1 3.8380 -2.6818 -2.0788 36 1 3.3866 -5.8179 -3.9567 37 1 6.6753 -1.4423 -1.0037 38 1 6.2772 -1.7884 0.6973 39 1 8.7293 -1.2679 0.2739 40 1 7.9485 -0.2146 1.4798 41 1 9.9472 1.3395 0.8680 42 1 10.4357 0.2899 -0.4840 43 1 10.0353 1.9983 -0.7832 44 1 7.5349 2.7178 -0.7116 45 1 7.6969 2.2335 0.9957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003298886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:21 Heat of formation + Delta-G solvation = 50.555641 kcal Electronic energy + Delta-G solvation = -26604.380286 eV Core-core repulsion = 23133.327732 eV Total energy + Delta-G solvation = -3471.052554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83796 -38.57997 -36.99666 -34.87830 -33.01162 -32.11302 -31.23284 -30.70967 -28.55083 -27.46296 -26.26831 -25.31129 -24.22172 -22.63659 -22.34851 -21.00054 -20.81322 -18.58622 -17.67640 -17.01674 -16.49123 -15.95793 -15.35925 -15.15414 -14.62368 -14.40570 -14.23619 -13.72093 -13.57193 -13.47833 -13.45553 -13.22253 -12.94229 -12.50303 -12.46135 -12.25927 -12.11239 -12.00493 -11.65091 -11.52224 -11.38140 -11.09134 -11.01991 -11.00029 -10.81921 -10.66552 -10.59964 -10.34583 -10.24252 -10.14768 -9.88809 -9.47208 -8.99692 -8.57160 -8.49274 -7.83291 -7.70997 -6.12256 -4.15767 0.65051 1.15994 1.32843 2.00715 2.34583 3.26323 3.33029 3.35756 3.87491 4.02458 4.27581 4.39361 4.55972 4.69741 4.80134 4.81895 4.98968 5.09994 5.23809 5.38746 5.42535 5.44515 5.54319 5.59660 5.63455 5.65832 5.72620 5.74415 5.81080 5.90110 5.95135 6.02483 6.11928 6.19063 6.24943 6.32202 6.34331 6.43660 6.51793 6.54323 6.85548 7.04315 7.06908 7.23406 7.63126 7.73876 7.96741 8.31976 8.36348 8.89632 9.48424 10.98530 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.005207 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.630741 B = 5375.999888 C = 7833.787831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.334 3.666 3 N -0.488 5.488 4 C 0.082 3.918 5 S 0.135 5.865 6 C -0.198 4.198 7 C -0.030 4.030 8 C -0.169 4.169 9 C 0.435 3.565 10 N -0.486 5.486 11 C 0.043 3.957 12 C 0.203 3.797 13 C -0.513 4.513 14 H 0.067 0.933 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 N -0.557 5.557 22 C -0.053 4.053 23 C -0.116 4.116 24 C -0.091 4.091 25 H 0.077 0.923 26 C -0.145 4.145 27 C -0.034 4.034 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.013 0.987 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 13.442 8.099 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 N -0.207 5.207 4 C -0.170 4.170 5 S 0.396 5.604 6 C -0.313 4.313 7 C -0.042 4.042 8 C -0.184 4.184 9 C 0.192 3.808 10 N -0.210 5.210 11 C -0.104 4.104 12 C 0.080 3.920 13 C -0.551 4.551 14 H 0.086 0.914 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.196 1.196 21 N -0.277 5.277 22 C -0.092 4.092 23 C -0.153 4.153 24 C -0.111 4.111 25 H 0.095 0.905 26 C -0.202 4.202 27 C -0.074 4.074 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.034 15.142 7.907 17.809 hybrid contribution 0.452 -2.429 -0.306 2.489 sum 5.486 12.714 7.601 15.796 Atomic orbital electron populations 1.20584 0.86081 1.04048 1.03498 1.23158 0.97876 0.83016 0.89782 1.69631 1.04483 1.28084 1.18513 1.23769 0.95467 0.96922 1.00848 1.83685 0.92895 1.05317 1.78545 1.24509 0.98672 0.95514 1.12599 1.20213 0.91430 0.94348 0.98218 1.20386 0.94621 0.93672 1.09738 1.20800 0.85307 0.91928 0.82792 1.60421 1.52959 1.01027 1.06624 1.22244 1.00562 0.98484 0.89074 1.19849 0.96205 0.91671 0.84272 1.21028 1.17826 1.05697 1.10568 0.91443 1.24969 0.95567 0.98305 0.95453 1.69965 1.32615 1.36991 1.13635 0.86463 0.80833 0.82664 0.77267 1.20621 1.21230 1.19635 1.68085 1.12812 1.29315 1.17500 1.20619 0.90326 0.93975 1.04244 1.21686 0.97271 0.96978 0.99368 1.21193 0.94134 0.94825 1.00910 0.90456 1.21814 0.95480 1.01371 1.01562 1.20361 0.87013 0.97990 1.01997 0.89927 0.89951 0.89457 0.94599 0.89270 0.93555 0.96910 0.95431 0.92714 0.89322 0.88533 0.91072 0.92021 0.92690 0.92302 0.92784 0.90687 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.25 36.01 0.37 -0.77 16 2 C 0.33 6.11 7.59 -156.91 -1.19 4.92 16 3 N -0.49 -9.00 10.61 -9.54 -0.10 -9.10 16 4 C 0.08 1.50 7.49 -15.86 -0.12 1.38 16 5 S 0.13 1.95 23.16 -107.50 -2.49 -0.54 16 6 C -0.20 -2.79 6.30 -35.32 -0.22 -3.02 16 7 C -0.03 -0.50 5.93 -102.78 -0.61 -1.11 16 8 C -0.17 -3.23 6.00 -105.10 -0.63 -3.86 16 9 C 0.44 9.03 5.44 -153.73 -0.84 8.19 16 10 N -0.49 -10.30 2.76 -181.39 -0.50 -10.80 16 11 C 0.04 0.82 9.20 60.06 0.55 1.37 16 12 C 0.20 5.19 4.51 -4.98 -0.02 5.16 16 13 C -0.51 -13.56 8.54 -34.44 -0.29 -13.85 16 14 H 0.07 1.71 7.10 -52.49 -0.37 1.34 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 N -0.56 -11.47 9.90 -9.22 -0.09 -11.56 16 22 C -0.05 -0.81 5.25 -27.10 -0.14 -0.95 16 23 C -0.12 -1.36 5.22 -26.68 -0.14 -1.50 16 24 C -0.09 -0.96 2.72 -90.51 -0.25 -1.20 16 25 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 26 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 27 C -0.03 -0.37 5.53 -27.32 -0.15 -0.52 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 33 H 0.05 0.77 8.10 -51.93 -0.42 0.34 16 34 H 0.01 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.03 0.78 8.05 -51.93 -0.42 0.37 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.10 1.59 7.10 -51.93 -0.37 1.22 16 39 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -30.18 374.56 -12.24 -42.42 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.98 Total: -1.48 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.44 Total: -5.09 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.04 Total: -56.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.49 Total: -0.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.18 -12.24 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003298886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.975 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds