Wall clock time and date at job start Tue Mar 31 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32157 * 117.98226 * 2 1 4 4 C 1.34030 * 117.40424 * 180.02562 * 3 2 1 5 5 S 1.74476 * 129.35847 * 179.97438 * 4 3 2 6 6 C 1.75846 * 92.39120 * 180.02562 * 5 4 3 7 7 C 1.33820 * 111.49034 * 359.96405 * 6 5 4 8 8 C 1.40177 * 120.96607 * 359.95467 * 4 3 2 9 9 C 1.42131 * 119.03005 * 0.02562 * 8 4 3 10 10 N 1.38334 * 122.20049 * 179.97438 * 9 8 4 11 11 C 1.46897 * 111.00019 * 115.85761 * 10 9 8 12 12 C 1.46900 * 111.00203 * 239.81718 * 10 9 8 13 13 C 1.50697 * 109.47228 * 169.99707 * 12 10 9 14 14 H 1.07999 * 120.00101 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00025 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00105 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47257 * 89.99685 * 17 15 13 19 19 H 1.48502 * 109.47123 * 209.99720 * 17 15 13 20 20 H 1.48503 * 109.47112 * 329.99520 * 17 15 13 21 21 N 1.31762 * 117.98206 * 179.97438 * 2 1 3 22 22 C 1.52361 * 123.14348 * 180.02562 * 7 6 5 23 23 C 1.52922 * 108.97594 * 17.26177 * 22 7 6 24 24 C 1.53185 * 109.08133 * 309.08441 * 23 22 7 25 25 H 1.08997 * 109.57658 * 310.64485 * 24 23 22 26 26 C 1.52996 * 109.67698 * 190.32797 * 24 23 22 27 27 C 1.51798 * 124.15638 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.46946 * 270.02099 * 1 2 3 29 29 H 1.09001 * 109.46813 * 30.02243 * 1 2 3 30 30 H 1.08999 * 109.46475 * 150.02024 * 1 2 3 31 31 H 1.08997 * 109.46772 * 65.83834 * 11 10 9 32 32 H 1.09001 * 109.46776 * 185.83643 * 11 10 9 33 33 H 1.09001 * 109.47063 * 305.84016 * 11 10 9 34 34 H 1.09000 * 109.46825 * 289.99705 * 12 10 9 35 35 H 1.09005 * 109.47027 * 49.99682 * 12 10 9 36 36 H 0.96999 * 120.00460 * 180.02562 * 16 15 13 37 37 H 1.08992 * 109.54439 * 257.41873 * 22 7 6 38 38 H 1.09002 * 109.64281 * 137.16069 * 22 7 6 39 39 H 1.08999 * 109.53058 * 189.20388 * 23 22 7 40 40 H 1.09000 * 109.53309 * 68.96713 * 23 22 7 41 41 H 1.09008 * 109.47354 * 300.56938 * 26 24 23 42 42 H 1.09003 * 109.47525 * 60.56671 * 26 24 23 43 43 H 1.09001 * 109.47565 * 180.57040 * 26 24 23 44 44 H 1.09001 * 109.56606 * 316.47797 * 27 6 5 45 45 H 1.09001 * 109.56464 * 76.82396 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1271 1.1671 0.0000 4 6 3.4674 1.1535 -0.0005 5 16 4.5874 2.4914 -0.0013 6 6 5.9816 1.4198 -0.0024 7 6 5.6115 0.1338 -0.0014 8 6 4.1765 -0.0556 -0.0001 9 6 3.4533 -1.2792 0.0003 10 7 4.0860 -2.5094 0.0002 11 6 3.7954 -3.2510 1.2345 12 6 3.7132 -3.2931 -1.1850 13 6 4.5972 -4.5098 -1.2812 14 1 5.3594 -4.6837 -0.5361 15 6 4.4322 -5.4014 -2.3198 16 7 3.5030 -5.1905 -3.2262 17 14 5.5275 -6.9100 -2.4386 18 1 4.9008 -8.0361 -1.7007 19 1 5.6981 -7.2867 -3.8649 20 1 6.8543 -6.6064 -1.8447 21 7 2.1253 -1.1636 0.0005 22 6 6.6071 -1.0196 -0.0014 23 6 7.9777 -0.4933 0.4264 24 6 8.3288 0.7349 -0.4190 25 1 8.1727 0.5089 -1.4738 26 6 9.7919 1.1182 -0.1880 27 6 7.4229 1.8964 -0.0040 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 2.7350 -3.5011 1.2669 32 1 4.3857 -4.1671 1.2555 33 1 4.0499 -2.6349 2.0970 34 1 2.6724 -3.6059 -1.1011 35 1 3.8380 -2.6818 -2.0788 36 1 3.3866 -5.8179 -3.9567 37 1 6.6753 -1.4423 -1.0037 38 1 6.2772 -1.7884 0.6973 39 1 8.7293 -1.2679 0.2739 40 1 7.9485 -0.2146 1.4798 41 1 9.9472 1.3395 0.8680 42 1 10.4357 0.2899 -0.4840 43 1 10.0353 1.9983 -0.7832 44 1 7.5349 2.7178 -0.7116 45 1 7.6969 2.2335 0.9957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003298886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:20 Heat of formation + Delta-G solvation = 35.371052 kcal Electronic energy + Delta-G solvation = -26605.038740 eV Core-core repulsion = 23133.327732 eV Total energy + Delta-G solvation = -3471.711008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.25576 -39.65642 -38.66095 -36.03279 -34.96096 -33.69831 -32.43534 -31.80179 -29.62762 -29.44850 -27.75830 -26.41115 -25.81759 -23.98525 -23.75448 -22.51235 -21.93727 -19.73175 -19.01992 -18.64429 -18.35294 -17.25554 -16.95948 -16.52483 -16.33902 -15.63214 -15.39155 -15.25819 -15.02303 -14.83659 -14.58534 -14.34599 -14.08620 -13.94786 -13.70711 -13.47221 -13.35107 -13.29832 -12.93911 -12.87482 -12.75281 -12.65034 -12.50100 -12.42994 -12.27580 -12.25748 -12.02057 -11.56878 -11.48404 -11.34817 -11.31404 -11.14248 -10.67222 -10.52518 -9.77639 -9.60207 -8.95276 -8.23780 -6.35783 -0.72420 -0.33158 0.06200 0.75778 1.05803 1.43369 1.44787 1.56352 2.33437 2.44147 2.57609 2.95487 3.10620 3.30172 3.44530 3.59098 3.87059 3.95999 4.02451 4.14736 4.30088 4.34317 4.47359 4.55778 4.61317 4.65471 4.67299 4.70434 4.73678 4.85256 4.85405 4.87988 5.00319 5.03004 5.07862 5.12190 5.15409 5.21114 5.27053 5.33123 5.47756 5.55665 5.58854 5.62912 5.68774 5.86708 5.92944 6.40852 6.77276 6.91104 7.34116 8.88366 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.005207 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.630741 B = 5375.999888 C = 7833.787831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.316 3.684 3 N -0.489 5.489 4 C 0.050 3.950 5 S 0.196 5.804 6 C -0.176 4.176 7 C -0.065 4.065 8 C -0.181 4.181 9 C 0.404 3.596 10 N -0.478 5.478 11 C 0.048 3.952 12 C 0.229 3.771 13 C -0.520 4.520 14 H 0.078 0.922 15 C 0.004 3.996 16 N -0.936 5.936 17 Si 0.975 3.025 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.257 1.257 21 N -0.583 5.583 22 C -0.046 4.046 23 C -0.109 4.109 24 C -0.088 4.088 25 H 0.062 0.938 26 C -0.139 4.139 27 C -0.036 4.036 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.022 0.978 32 H 0.090 0.910 33 H 0.071 0.929 34 H -0.024 1.024 35 H -0.014 1.014 36 H 0.265 0.735 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 15.145 9.385 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 N -0.208 5.208 4 C -0.202 4.202 5 S 0.457 5.543 6 C -0.291 4.291 7 C -0.077 4.077 8 C -0.196 4.196 9 C 0.161 3.839 10 N -0.202 5.202 11 C -0.098 4.098 12 C 0.105 3.895 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.194 4.194 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.180 1.180 21 N -0.303 5.303 22 C -0.085 4.085 23 C -0.146 4.146 24 C -0.108 4.108 25 H 0.080 0.920 26 C -0.196 4.196 27 C -0.075 4.075 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.089 0.911 34 H -0.006 1.006 35 H 0.004 0.996 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.516 16.869 9.222 20.642 hybrid contribution -0.335 -2.779 -0.694 2.884 sum 7.181 14.090 8.528 17.967 Atomic orbital electron populations 1.20698 0.83171 1.04681 1.05076 1.23913 0.99651 0.82485 0.89541 1.69707 1.04757 1.27934 1.18373 1.24380 0.95976 0.98569 1.01259 1.83449 0.91007 1.02907 1.76901 1.25128 1.00647 0.94778 1.08587 1.20286 0.90383 0.95752 1.01243 1.20641 0.96171 0.93282 1.09523 1.20904 0.85994 0.92111 0.84908 1.60283 1.53050 1.01030 1.05793 1.22242 0.99721 0.98854 0.89003 1.19303 0.94050 0.91390 0.84778 1.21336 1.17833 1.05831 1.10795 0.90369 1.25960 0.96912 1.01696 0.94879 1.70122 1.34614 1.38412 1.14457 0.85298 0.79258 0.78360 0.77221 1.19730 1.21205 1.18043 1.68049 1.13054 1.30841 1.18369 1.20484 0.92461 0.93536 1.02050 1.21659 0.94908 0.97856 1.00185 1.21174 0.95868 0.94109 0.99697 0.91985 1.21764 0.93273 1.01921 1.02651 1.20625 0.84190 0.98519 1.04132 0.87734 0.88112 0.89886 0.95903 0.89131 0.91074 1.00636 0.99582 0.92641 0.92410 0.90331 0.90337 0.90794 0.91435 0.92225 0.91542 0.88507 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 10.25 71.24 0.73 -1.40 16 2 C 0.32 11.91 7.59 138.65 1.05 12.96 16 3 N -0.49 -18.11 10.61 -184.10 -1.95 -20.07 16 4 C 0.05 1.84 7.49 84.83 0.64 2.47 16 5 S 0.20 5.24 23.16 -56.49 -1.31 3.93 16 6 C -0.18 -4.61 6.30 25.03 0.16 -4.45 16 7 C -0.07 -2.16 5.93 -18.67 -0.11 -2.27 16 8 C -0.18 -7.11 6.00 -20.18 -0.12 -7.23 16 9 C 0.40 17.73 5.44 133.77 0.73 18.46 16 10 N -0.48 -21.51 2.76 -727.78 -2.01 -23.52 16 11 C 0.05 1.90 9.20 127.69 1.18 3.07 16 12 C 0.23 12.57 4.51 85.56 0.39 12.96 16 13 C -0.52 -28.54 8.54 25.60 0.22 -28.32 16 14 H 0.08 4.04 7.10 -2.91 -0.02 4.02 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.94 -56.60 13.29 21.45 0.28 -56.32 16 17 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 N -0.58 -25.37 9.90 -183.10 -1.81 -27.18 16 22 C -0.05 -1.44 5.25 30.36 0.16 -1.28 16 23 C -0.11 -2.38 5.22 30.63 0.16 -2.22 16 24 C -0.09 -1.63 2.72 -10.72 -0.03 -1.66 16 25 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 26 C -0.14 -1.79 9.18 71.98 0.66 -1.13 16 27 C -0.04 -0.63 5.53 30.21 0.17 -0.46 16 28 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.09 3.47 6.91 -2.39 -0.02 3.45 16 33 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 34 H -0.02 -1.48 8.11 -2.39 -0.02 -1.50 16 35 H -0.01 -0.87 8.05 -2.38 -0.02 -0.88 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.68 7.10 -2.39 -0.02 2.66 16 39 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 40 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 41 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 Total: -1.00 -69.52 374.56 2.65 -66.87 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.99 Total: 11.07 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.43 Total: 0.18 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -5.49 Total: -127.09 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.31 Total: 3.93 kcal Total: -69.52 2.65 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003298886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.244 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds