Wall clock time and date at job start Tue Mar 31 2020 04:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35960 * 117.00019 * 2 1 4 4 C 1.38675 * 119.94856 * 0.02562 * 3 2 1 5 5 C 1.37988 * 120.12917 * 180.02562 * 4 3 2 6 6 C 1.39404 * 120.01758 * 359.97438 * 5 4 3 7 7 C 1.48266 * 120.04869 * 180.02562 * 6 5 4 8 8 N 1.31374 * 126.51434 * 144.66803 * 7 6 5 9 9 N 1.39771 * 109.08062 * 179.89965 * 8 7 6 10 10 C 1.46500 * 125.16055 * 180.13005 * 9 8 7 11 11 C 1.50695 * 109.47483 * 305.28071 * 10 9 8 12 12 H 1.08002 * 119.99880 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00214 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00094 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99704 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47209 * 90.00117 * 15 13 11 17 17 H 1.48507 * 109.47171 * 210.00360 * 15 13 11 18 18 H 1.48501 * 109.47447 * 330.00207 * 15 13 11 19 19 C 1.34143 * 109.68306 * 0.37615 * 9 8 7 20 20 C 1.37984 * 107.88611 * 359.78010 * 19 9 8 21 21 C 1.47264 * 126.81057 * 180.02562 * 20 19 9 22 22 N 1.34777 * 119.99925 * 359.95776 * 21 20 19 23 23 O 1.21626 * 120.00435 * 179.97438 * 21 20 19 24 24 C 1.39407 * 119.89852 * 0.02562 * 6 5 4 25 25 C 1.38322 * 119.87090 * 359.97438 * 24 6 5 26 26 O 1.35992 * 120.00635 * 180.02562 * 25 24 6 27 27 C 1.42899 * 117.00585 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47104 * 299.99792 * 1 2 3 29 29 H 1.09000 * 109.47227 * 59.99039 * 1 2 3 30 30 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.93463 * 359.75079 * 4 3 2 32 32 H 1.07995 * 119.98804 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46422 * 65.28044 * 10 9 8 34 34 H 1.09003 * 109.47208 * 185.27629 * 10 9 8 35 35 H 0.96996 * 120.00174 * 179.97438 * 14 13 11 36 36 H 1.07989 * 126.05967 * 179.77763 * 19 9 8 37 37 H 0.96995 * 119.99970 * 0.02562 * 22 21 20 38 38 H 0.97010 * 119.99979 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.06367 * 179.97438 * 24 6 5 40 40 H 1.09000 * 109.47231 * 300.00254 * 27 26 25 41 41 H 1.09005 * 109.46556 * 59.99981 * 27 26 25 42 42 H 1.08998 * 109.47408 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2900 2.3738 0.0005 5 6 1.9125 3.6052 0.0000 6 6 3.3044 3.6830 -0.0005 7 6 3.9741 5.0058 -0.0005 8 7 5.0959 5.3140 0.6097 9 7 5.3945 6.6575 0.3658 10 6 6.5699 7.3669 0.8773 11 6 6.6262 7.2296 2.3770 12 1 5.8631 6.6696 2.8970 13 6 7.6526 7.8181 3.0850 14 7 7.7021 7.6979 4.3937 15 14 8.9736 8.7848 2.1853 16 1 8.5617 10.2078 2.0817 17 1 10.2520 8.6928 2.9355 18 1 9.1576 8.2225 0.8232 19 6 4.4389 7.2003 -0.4033 20 6 3.5070 6.2201 -0.6764 21 6 2.2857 6.3647 -1.4864 22 7 1.9866 7.5527 -2.0484 23 8 1.5467 5.4123 -1.6481 24 6 4.0656 2.5151 -0.0011 25 6 3.4370 1.2830 -0.0005 26 8 4.1769 0.1420 -0.0005 27 6 5.5981 0.2902 -0.0017 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2115 2.3150 -0.0031 32 1 1.3213 4.5090 0.0008 33 1 7.4716 6.9390 0.4391 34 1 6.5019 8.4217 0.6113 35 1 8.4243 8.1116 4.8918 36 1 4.4049 8.2233 -0.7477 37 1 2.5759 8.3122 -1.9196 38 1 1.1823 7.6479 -2.5823 39 1 5.1441 2.5722 -0.0019 40 1 5.9056 0.8386 -0.8921 41 1 5.9068 0.8395 0.8879 42 1 6.0662 -0.6941 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:52 Heat of formation + Delta-G solvation = -3.375207 kcal Electronic energy + Delta-G solvation = -27814.368275 eV Core-core repulsion = 23762.391138 eV Total energy + Delta-G solvation = -4051.977137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81055 -40.16048 -38.59496 -38.28488 -36.69478 -33.81670 -33.52300 -32.20219 -30.38930 -30.11302 -29.54603 -27.93288 -27.15002 -26.74794 -23.43559 -23.16642 -21.96750 -21.43113 -19.94809 -19.48107 -18.40279 -17.55947 -17.20629 -16.76650 -16.36565 -16.30955 -15.92733 -15.51879 -15.12500 -14.95837 -14.73480 -14.49822 -14.31249 -14.18598 -13.81070 -13.57819 -13.05027 -12.85092 -12.66017 -12.40674 -12.26770 -12.04125 -11.99447 -11.35974 -11.10250 -11.08514 -11.02679 -10.90757 -10.84367 -10.38352 -10.25671 -9.81279 -9.62246 -9.45500 -9.10195 -8.89268 -8.44045 -8.09559 -7.37581 -6.35511 -4.40176 1.29279 1.67706 1.93689 2.75107 2.99125 3.05820 3.10611 3.18633 3.36155 3.44724 3.70619 3.80000 4.10271 4.11279 4.64936 4.83955 4.95746 4.98570 5.08420 5.16452 5.19841 5.33276 5.35075 5.38890 5.45545 5.55025 5.62397 5.65551 5.71516 5.77363 5.91572 6.10574 6.26854 6.44921 6.55842 6.78337 6.85674 6.90605 6.98647 7.14648 7.17902 7.36092 7.52739 7.73719 8.12253 8.22220 8.53602 8.73385 9.17316 10.76812 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.003523 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.273532 B = 7946.959267 C = 9591.512779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.103 3.897 4 C -0.182 4.182 5 C -0.050 4.050 6 C -0.010 4.010 7 C 0.145 3.855 8 N -0.255 5.255 9 N -0.310 5.310 10 C 0.224 3.776 11 C -0.541 4.541 12 H 0.088 0.912 13 C 0.080 3.920 14 N -0.882 5.882 15 Si 0.872 3.128 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.264 1.264 19 C 0.100 3.900 20 C -0.313 4.313 21 C 0.602 3.398 22 N -0.859 5.859 23 O -0.547 6.547 24 C -0.140 4.140 25 C 0.084 3.916 26 O -0.310 6.310 27 C 0.026 3.974 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.270 0.730 36 H 0.177 0.823 37 H 0.397 0.603 38 H 0.399 0.601 39 H 0.138 0.862 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 -5.354 -12.610 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.057 3.943 4 C -0.201 4.201 5 C -0.069 4.069 6 C -0.013 4.013 7 C -0.023 4.023 8 N -0.075 5.075 9 N -0.085 5.085 10 C 0.105 3.895 11 C -0.579 4.579 12 H 0.106 0.894 13 C -0.125 4.125 14 N -0.518 5.518 15 Si 0.698 3.302 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.054 4.054 20 C -0.329 4.329 21 C 0.391 3.609 22 N -0.422 5.422 23 O -0.426 6.426 24 C -0.159 4.159 25 C 0.039 3.961 26 O -0.224 6.224 27 C -0.070 4.070 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.194 0.806 37 H 0.225 0.775 38 H 0.230 0.770 39 H 0.156 0.844 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.548 -6.730 -11.598 16.461 hybrid contribution 0.259 1.923 -0.922 2.148 sum -9.289 -4.807 -12.520 16.314 Atomic orbital electron populations 1.23024 0.79000 1.03491 1.01299 1.86128 1.20698 1.26319 1.89153 1.18324 0.89014 0.85019 1.01909 1.20923 0.99700 0.91145 1.08343 1.21281 0.93147 0.97912 0.94598 1.17322 0.92289 0.88171 1.03485 1.21655 0.92689 0.92448 0.95462 1.77545 1.15580 0.93736 1.20640 1.48799 1.18872 1.06980 1.33867 1.20238 0.80690 0.90890 0.97641 1.21033 1.13112 1.35990 0.87793 0.89427 1.24819 0.97216 0.95665 0.94829 1.69860 1.32646 1.43312 1.05986 0.86925 0.82100 0.80821 0.80344 1.19636 1.20364 1.18888 1.22899 0.89685 0.98682 0.94158 1.20919 1.01610 0.94396 1.16000 1.17234 0.83872 0.82197 0.77611 1.43707 1.29407 1.12757 1.56328 1.90752 1.51733 1.38339 1.61819 1.21108 1.00495 0.90112 1.04233 1.17946 0.88086 0.85761 1.04330 1.86113 1.18571 1.28132 1.89617 1.23048 0.78804 1.03461 1.01647 0.92757 0.92767 0.88600 0.84849 0.83470 0.93423 0.93120 0.91969 0.80592 0.77540 0.77034 0.84387 0.92849 0.92379 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.53 10.27 -34.28 -0.35 -4.89 16 3 C 0.10 1.65 6.70 -39.04 -0.26 1.39 16 4 C -0.18 -2.74 9.02 -39.51 -0.36 -3.09 16 5 C -0.05 -0.84 7.76 -39.24 -0.30 -1.15 16 6 C -0.01 -0.19 5.74 -104.90 -0.60 -0.79 16 7 C 0.14 2.84 6.93 -80.56 -0.56 2.28 16 8 N -0.25 -5.54 12.27 34.57 0.42 -5.12 16 9 N -0.31 -6.25 3.62 -62.04 -0.22 -6.48 16 10 C 0.22 4.80 5.28 -5.20 -0.03 4.77 16 11 C -0.54 -14.38 9.76 -34.44 -0.34 -14.72 16 12 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 13 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.88 -25.46 13.96 55.43 0.77 -24.68 16 15 Si 0.87 18.93 27.47 -169.99 -4.67 14.26 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 19 C 0.10 1.58 10.89 -16.64 -0.18 1.40 16 20 C -0.31 -5.27 6.26 -102.95 -0.64 -5.92 16 21 C 0.60 8.90 7.94 -12.59 -0.10 8.80 16 22 N -0.86 -8.31 8.86 30.40 0.27 -8.04 16 23 O -0.55 -9.40 13.27 5.25 0.07 -9.33 16 24 C -0.14 -2.42 8.74 -39.12 -0.34 -2.77 16 25 C 0.08 1.41 6.69 -39.17 -0.26 1.15 16 26 O -0.31 -4.93 10.27 -34.38 -0.35 -5.28 16 27 C 0.03 0.31 9.81 101.05 0.99 1.30 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 29 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.13 1.61 6.28 -52.48 -0.33 1.28 16 32 H 0.15 2.52 5.64 -52.49 -0.30 2.22 16 33 H 0.05 1.02 7.20 -51.93 -0.37 0.65 16 34 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.18 1.86 7.48 -52.49 -0.39 1.47 16 37 H 0.40 2.81 7.78 -40.82 -0.32 2.49 16 38 H 0.40 3.13 8.93 -40.82 -0.36 2.77 16 39 H 0.14 2.31 6.29 -52.49 -0.33 1.98 16 40 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 41 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -34.63 357.91 -5.58 -40.21 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.82 Total: 8.03 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.09 Total: -4.08 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.24 Total: -44.32 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.64 Total: -19.49 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.67 Total: 14.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.63 -5.58 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.835 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds