Wall clock time and date at job start Tue Mar 31 2020 04:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27943 * 1 3 3 Si 1.86798 * 119.99942 * 2 1 4 4 H 1.48498 * 109.47418 * 269.99948 * 3 2 1 5 5 H 1.48504 * 109.47109 * 30.00267 * 3 2 1 6 6 H 1.48505 * 109.47129 * 149.99974 * 3 2 1 7 7 C 1.50701 * 119.99925 * 180.02562 * 2 1 3 8 8 C 1.55454 * 110.93794 * 272.28188 * 7 2 1 9 9 C 1.54931 * 101.87550 * 155.69019 * 8 7 2 10 10 H 1.08998 * 110.18859 * 86.44547 * 9 8 7 11 11 C 1.50698 * 110.18966 * 208.29127 * 9 8 7 12 12 O 1.21249 * 120.00042 * 102.80895 * 11 9 8 13 13 C 1.47170 * 119.99835 * 282.81568 * 11 9 8 14 14 C 1.39850 * 120.16826 * 359.71839 * 13 11 9 15 15 C 1.37891 * 119.82232 * 179.77170 * 14 13 11 16 16 C 1.38408 * 120.16746 * 0.53298 * 15 14 13 17 17 C 1.38402 * 120.35444 * 359.69535 * 16 15 14 18 18 C 1.37889 * 120.16926 * 0.04652 * 17 16 15 19 19 N 1.46437 * 105.78546 * 327.36806 * 9 8 7 20 20 C 1.38640 * 128.21279 * 191.27247 * 19 9 8 21 21 C 1.34877 * 116.14557 * 218.41034 * 20 19 9 22 22 C 1.47722 * 119.33155 * 1.00985 * 21 20 19 23 23 C 1.39601 * 120.21798 * 162.41216 * 22 21 20 24 24 C 1.37946 * 119.82233 * 179.68993 * 23 22 21 25 25 C 1.38395 * 120.32125 * 359.90675 * 24 23 22 26 26 C 1.38475 * 120.25839 * 0.39367 * 25 24 23 27 27 C 1.37542 * 119.98294 * 359.47142 * 26 25 24 28 28 C 1.47815 * 109.32523 * 14.62011 * 19 9 8 29 29 H 1.09000 * 110.56219 * 249.81531 * 28 19 9 30 30 H 0.96997 * 119.99805 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.80346 * 148.63359 * 7 2 1 32 32 H 1.08999 * 110.95304 * 273.83536 * 8 7 2 33 33 H 1.09001 * 110.94853 * 37.50950 * 8 7 2 34 34 H 1.08004 * 120.08886 * 0.02562 * 14 13 11 35 35 H 1.07995 * 119.91858 * 180.24864 * 15 14 13 36 36 H 1.08005 * 119.82165 * 179.71656 * 16 15 14 37 37 H 1.07995 * 119.91825 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.09127 * 179.97438 * 18 17 16 39 39 H 1.07996 * 121.93428 * 38.39388 * 20 19 9 40 40 H 1.08003 * 120.33642 * 181.02422 * 21 20 19 41 41 H 1.08001 * 120.09347 * 359.66917 * 23 22 21 42 42 H 1.07993 * 119.84234 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.86631 * 180.11265 * 25 24 23 44 44 H 1.08001 * 120.01432 * 179.72371 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 2.4609 2.0465 -1.4000 5 1 1.4108 2.6527 0.7001 6 1 3.5110 1.4402 0.7001 7 6 2.0329 -1.3051 -0.0006 8 6 2.2606 -1.8158 1.4499 9 6 2.4295 -3.3399 1.2286 10 1 3.4691 -3.5738 0.9994 11 6 1.9831 -4.0959 2.4533 12 8 0.9055 -4.6516 2.4635 13 6 2.8551 -4.1597 3.6371 14 6 4.1012 -3.5249 3.6271 15 6 4.9105 -3.5852 4.7419 16 6 4.4971 -4.2810 5.8647 17 6 3.2674 -4.9159 5.8807 18 6 2.4444 -4.8603 4.7757 19 7 1.5733 -3.6741 0.0885 20 6 1.2072 -4.9303 -0.3698 21 6 1.1445 -5.0793 -1.7089 22 6 1.4822 -3.9358 -2.5809 23 6 1.7825 -4.1442 -3.9282 24 6 2.0904 -3.0697 -4.7366 25 6 2.1012 -1.7863 -4.2189 26 6 1.8107 -1.5706 -2.8822 27 6 1.4993 -2.6332 -2.0664 28 6 1.1796 -2.4314 -0.6084 29 1 0.1188 -2.2292 -0.4606 30 1 -0.4850 0.8400 0.0004 31 1 2.9799 -1.2051 -0.5309 32 1 3.1639 -1.3819 1.8786 33 1 1.3943 -1.6062 2.0774 34 1 4.4270 -2.9854 2.7501 35 1 5.8714 -3.0922 4.7373 36 1 5.1375 -4.3285 6.7332 37 1 2.9517 -5.4564 6.7607 38 1 1.4853 -5.3565 4.7894 39 1 0.9852 -5.7427 0.3062 40 1 0.8503 -6.0252 -2.1393 41 1 1.7741 -5.1440 -4.3365 42 1 2.3232 -3.2306 -5.7788 43 1 2.3415 -0.9502 -4.8589 44 1 1.8246 -0.5679 -2.4813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004566199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:06 Heat of formation + Delta-G solvation = 90.677442 kcal Electronic energy + Delta-G solvation = -28231.865326 eV Core-core repulsion = 24581.160142 eV Total energy + Delta-G solvation = -3650.705184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08990 -40.75421 -39.31508 -38.65949 -36.99061 -35.01066 -33.25803 -32.26002 -31.89835 -31.76839 -29.55001 -29.33892 -25.61614 -25.01679 -23.78606 -23.62053 -23.08068 -22.73421 -20.99930 -20.27760 -19.48533 -18.69057 -18.27480 -17.61829 -17.04612 -16.84566 -16.51043 -16.14463 -15.89367 -15.82382 -15.50355 -15.13348 -15.03746 -14.88361 -14.64949 -14.45148 -14.38956 -14.11516 -13.86830 -13.69350 -13.48602 -13.22684 -13.17471 -13.03663 -12.64204 -12.55013 -12.24179 -12.20649 -12.07084 -11.95349 -11.72697 -11.47574 -11.21492 -10.80899 -9.97691 -9.96320 -9.96049 -9.76666 -9.64043 -8.12731 -0.38304 0.10206 0.41259 0.47489 0.78779 1.08095 1.32102 1.50580 1.58050 1.77425 1.90287 2.07564 2.81408 2.84248 2.98031 3.23317 3.47291 3.66181 3.78268 3.83393 3.90108 3.99303 4.00137 4.07296 4.11092 4.22439 4.23273 4.30650 4.35605 4.45413 4.49656 4.53665 4.59524 4.62457 4.80285 4.85004 4.86986 4.90083 5.00901 5.05792 5.07768 5.17695 5.19545 5.31857 5.34488 5.44278 5.51012 5.61900 5.62704 5.68058 5.93757 6.08403 6.19488 6.36316 6.70534 6.89625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.651 5.651 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.241 1.241 5 H -0.261 1.261 6 H -0.210 1.210 7 C -0.065 4.065 8 C -0.102 4.102 9 C 0.108 3.892 10 H 0.123 0.877 11 C 0.390 3.610 12 O -0.479 6.479 13 C -0.187 4.187 14 C -0.068 4.068 15 C -0.132 4.132 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.083 4.083 19 N -0.634 5.634 20 C 0.158 3.842 21 C -0.248 4.248 22 C -0.035 4.035 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.109 4.109 27 C -0.117 4.117 28 C 0.198 3.802 29 H 0.075 0.925 30 H 0.347 0.653 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.001 4.866 2.447 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.264 5.264 2 C -0.250 4.250 3 Si 0.782 3.218 4 H -0.164 1.164 5 H -0.185 1.185 6 H -0.131 1.131 7 C -0.085 4.085 8 C -0.141 4.141 9 C 0.003 3.997 10 H 0.140 0.860 11 C 0.268 3.732 12 O -0.356 6.356 13 C -0.188 4.188 14 C -0.086 4.086 15 C -0.150 4.150 16 C -0.106 4.106 17 C -0.160 4.160 18 C -0.102 4.102 19 N -0.347 5.347 20 C 0.040 3.960 21 C -0.273 4.273 22 C -0.036 4.036 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.118 4.118 28 C 0.095 3.905 29 H 0.092 0.908 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.120 4.596 2.562 8.853 hybrid contribution -0.875 -0.142 -0.053 0.888 sum 6.245 4.453 2.509 8.070 Atomic orbital electron populations 1.68128 1.11224 1.38039 1.09058 1.30370 0.96627 1.05855 0.92111 0.85227 0.81322 0.72591 0.82685 1.16432 1.18489 1.13087 1.21688 0.99326 0.90460 0.97015 1.22898 1.05717 0.89852 0.95613 1.22153 0.96496 0.96446 0.84603 0.85968 1.23264 0.84902 0.76564 0.88431 1.90524 1.23141 1.38499 1.83412 1.20467 0.97856 1.04872 0.95599 1.21817 0.91285 0.95665 0.99825 1.21589 1.01197 0.99492 0.92712 1.21854 0.95450 0.94037 0.99287 1.21403 0.95123 1.00927 0.98553 1.21495 0.99526 0.96183 0.92948 1.46755 1.55523 1.03545 1.28897 1.21686 0.93894 0.86788 0.93640 1.21993 1.14282 0.98707 0.92342 1.18984 0.98148 0.92777 0.93658 1.21388 1.01217 0.99815 0.92795 1.21343 0.99416 0.92734 1.00485 1.21446 1.00977 0.97624 0.95563 1.20914 0.99584 0.98366 0.93890 1.20436 1.02787 0.93151 0.95443 1.20495 0.99153 0.83537 0.87355 0.90785 0.83551 0.84979 0.84108 0.90809 0.82024 0.82350 0.83314 0.84320 0.86666 0.84319 0.84927 0.85379 0.84513 0.84161 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -0.96 12.30 24.11 0.30 -0.66 16 2 C 0.00 0.01 3.90 88.68 0.35 0.35 16 3 Si 0.97 -6.53 29.56 68.60 2.03 -4.50 16 4 H -0.24 1.30 7.11 99.48 0.71 2.01 16 5 H -0.26 1.00 7.11 99.48 0.71 1.71 16 6 H -0.21 1.99 7.11 99.48 0.71 2.70 16 7 C -0.07 0.17 1.76 -10.42 -0.02 0.15 16 8 C -0.10 0.46 5.62 32.10 0.18 0.64 16 9 C 0.11 -0.01 2.73 44.92 0.12 0.11 16 10 H 0.12 -0.62 7.33 -2.39 -0.02 -0.64 16 11 C 0.39 1.77 6.19 28.03 0.17 1.94 16 12 O -0.48 -6.07 15.12 -2.93 -0.04 -6.12 16 13 C -0.19 -0.25 5.87 -20.15 -0.12 -0.36 16 14 C -0.07 0.35 9.27 22.58 0.21 0.56 16 15 C -0.13 0.83 10.03 22.23 0.22 1.05 16 16 C -0.09 0.38 10.04 22.35 0.22 0.60 16 17 C -0.14 0.11 10.03 22.23 0.22 0.33 16 18 C -0.08 -0.27 9.60 22.58 0.22 -0.06 16 19 N -0.63 -3.76 2.82 -656.58 -1.85 -5.61 16 20 C 0.16 1.35 10.10 82.84 0.84 2.18 16 21 C -0.25 -2.13 9.99 24.01 0.24 -1.89 16 22 C -0.04 -0.31 5.81 -20.00 -0.12 -0.43 16 23 C -0.13 -0.90 9.79 22.53 0.22 -0.67 16 24 C -0.12 -0.50 10.02 22.24 0.22 -0.27 16 25 C -0.14 -0.40 10.05 22.36 0.22 -0.18 16 26 C -0.11 -0.39 8.97 22.16 0.20 -0.19 16 27 C -0.12 -0.79 5.49 -19.61 -0.11 -0.90 16 28 C 0.20 1.04 3.16 44.24 0.14 1.18 16 29 H 0.07 0.82 6.84 -2.39 -0.02 0.80 16 30 H 0.35 -0.55 8.23 -92.71 -0.76 -1.31 16 31 H 0.13 -0.95 7.30 -2.39 -0.02 -0.96 16 32 H 0.14 -1.83 7.55 -2.39 -0.02 -1.85 16 33 H 0.07 -0.06 7.92 -2.39 -0.02 -0.08 16 34 H 0.16 -1.93 6.01 -2.91 -0.02 -1.95 16 35 H 0.16 -1.86 8.06 -2.91 -0.02 -1.89 16 36 H 0.15 -1.30 8.06 -2.91 -0.02 -1.33 16 37 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 38 H 0.12 0.66 7.65 -2.91 -0.02 0.63 16 39 H 0.14 1.18 7.25 -2.91 -0.02 1.16 16 40 H 0.13 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.13 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.13 -0.10 6.57 -2.91 -0.02 -0.12 16 Total: 0.00 -18.52 358.59 5.10 -13.42 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: 1.03 Total: -0.68 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 3.64 Total: 4.15 kcal Atomic # 7 Polarization: -4.72 SS G_CDS: -1.55 Total: -6.27 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.04 Total: -6.12 kcal Atomic # 14 Polarization: -6.53 SS G_CDS: 2.03 Total: -4.50 kcal Total: -18.52 5.10 -13.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004566199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.098 kcal (2) G-P(sol) polarization free energy of solvation -18.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds