Wall clock time and date at job start Tue Mar 31 2020 04:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27939 * 1 3 3 Si 1.86802 * 119.99980 * 2 1 4 4 H 1.48497 * 109.46807 * 239.99618 * 3 2 1 5 5 H 1.48497 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47267 * 119.99791 * 3 2 1 7 7 C 1.50706 * 120.00026 * 179.97438 * 2 1 3 8 8 C 1.55449 * 110.90948 * 266.46015 * 7 2 1 9 9 C 1.54926 * 101.87884 * 155.65906 * 8 7 2 10 10 H 1.08998 * 110.18379 * 208.20105 * 9 8 7 11 11 C 1.50702 * 110.18958 * 86.43855 * 9 8 7 12 12 O 1.21253 * 120.00281 * 260.00042 * 11 9 8 13 13 C 1.47171 * 120.00049 * 79.72301 * 11 9 8 14 14 C 1.39858 * 120.16740 * 359.97438 * 13 11 9 15 15 C 1.37895 * 119.81868 * 179.74452 * 14 13 11 16 16 C 1.38398 * 120.17260 * 0.53259 * 15 14 13 17 17 C 1.38401 * 120.35080 * 359.72645 * 16 15 14 18 18 C 1.37886 * 120.17334 * 0.02562 * 17 16 15 19 19 N 1.46426 * 105.78723 * 327.35925 * 9 8 7 20 20 C 1.38643 * 128.22177 * 191.29933 * 19 9 8 21 21 C 1.34882 * 116.14413 * 218.41067 * 20 19 9 22 22 C 1.47709 * 119.33759 * 1.02021 * 21 20 19 23 23 C 1.39598 * 120.23679 * 162.32851 * 22 21 20 24 24 C 1.41582 * 118.95089 * 177.19563 * 23 22 21 25 25 C 1.38397 * 120.60060 * 2.67234 * 24 23 22 26 26 C 1.38476 * 120.25142 * 358.23931 * 25 24 23 27 27 C 1.37533 * 119.97339 * 359.97438 * 26 25 24 28 28 C 1.47808 * 109.32370 * 14.64364 * 19 9 8 29 29 H 1.09003 * 110.58251 * 249.74650 * 28 19 9 30 30 H 0.97000 * 120.00491 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.83166 * 142.80551 * 7 2 1 32 32 H 1.08990 * 110.95094 * 37.51110 * 8 7 2 33 33 H 1.08998 * 110.97602 * 273.81528 * 8 7 2 34 34 H 1.07997 * 120.09251 * 0.02562 * 14 13 11 35 35 H 1.07996 * 119.90844 * 180.23346 * 15 14 13 36 36 H 1.08005 * 119.82464 * 179.69708 * 16 15 14 37 37 H 1.08000 * 119.91339 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.09102 * 180.02562 * 18 17 16 39 39 H 1.08005 * 121.93026 * 38.39253 * 20 19 9 40 40 H 1.07998 * 120.33069 * 180.99724 * 21 20 19 41 41 H 1.08002 * 120.08807 * 359.76988 * 23 22 21 42 42 H 1.08004 * 119.54116 * 180.86178 * 24 23 22 43 43 H 1.08001 * 119.87217 * 178.25680 * 25 24 23 44 44 H 1.08002 * 120.01246 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6178 0.0000 4 1 3.0672 1.6963 -1.2125 5 1 1.2483 2.7464 -0.0006 6 1 3.0671 1.6965 1.2125 7 6 2.0329 -1.3052 0.0006 8 6 2.3880 -1.7401 1.4501 9 6 2.5395 -3.2741 1.2947 10 1 2.2982 -3.7729 2.2333 11 6 3.9441 -3.6176 0.8702 12 8 4.1836 -3.8602 -0.2934 13 6 5.0263 -3.6527 1.8669 14 6 4.7552 -3.3673 3.2090 15 6 5.7737 -3.4074 4.1378 16 6 7.0632 -3.7182 3.7431 17 6 7.3405 -3.9966 2.4160 18 6 6.3321 -3.9656 1.4761 19 7 1.5871 -3.6650 0.2534 20 6 1.1839 -4.9423 -0.1045 21 6 1.0042 -5.1611 -1.4233 22 6 1.2626 -4.0661 -2.3804 23 6 1.4454 -4.3456 -3.7358 24 6 1.6316 -3.2707 -4.6382 25 6 1.6876 -1.9665 -4.1785 26 6 1.5253 -1.6944 -2.8304 27 6 1.3070 -2.7225 -1.9434 28 6 1.1318 -2.4595 -0.4705 29 1 0.0874 -2.2469 -0.2421 30 1 -0.4851 0.8400 -0.0004 31 1 2.9296 -1.2354 -0.6153 32 1 1.5796 -1.4963 2.1392 33 1 3.3245 -1.2870 1.7751 34 1 3.7502 -3.1206 3.5178 35 1 5.5653 -3.1909 5.1751 36 1 7.8576 -3.7432 4.4745 37 1 8.3494 -4.2379 2.1157 38 1 6.5498 -4.1835 0.4409 39 1 1.0233 -5.7176 0.6301 40 1 0.6751 -6.1274 -1.7760 41 1 1.4022 -5.3653 -4.0890 42 1 1.7600 -3.4753 -5.6909 43 1 1.8582 -1.1579 -4.8738 44 1 1.5701 -0.6753 -2.4758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004566200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:11 Heat of formation + Delta-G solvation = 82.950757 kcal Electronic energy + Delta-G solvation = -28657.096655 eV Core-core repulsion = 25006.056417 eV Total energy + Delta-G solvation = -3651.040238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.01409 -40.51579 -39.16141 -38.34159 -36.94552 -34.90770 -33.07745 -32.12429 -31.96859 -31.65789 -29.40332 -29.10978 -25.61576 -24.91387 -23.75889 -23.55785 -23.05178 -22.55832 -20.78685 -20.38700 -19.42152 -18.36010 -18.26488 -17.65003 -17.18444 -16.71733 -16.47112 -16.07882 -15.75677 -15.60825 -15.35810 -15.24063 -14.86595 -14.85870 -14.55679 -14.52394 -14.31094 -14.11411 -13.65860 -13.54101 -13.46601 -13.35316 -13.04908 -12.84259 -12.67324 -12.58471 -12.39201 -12.26113 -12.08442 -12.01002 -11.66096 -11.33382 -11.01088 -10.73352 -10.05441 -10.02024 -9.99730 -9.57410 -9.31063 -7.93015 -0.35247 0.32220 0.36445 0.64453 0.69195 0.92874 1.26436 1.39717 1.58117 1.73538 1.78739 2.20352 2.75969 2.95430 3.18914 3.22184 3.40837 3.66075 3.73985 3.85793 3.89346 3.95689 4.03012 4.06557 4.15925 4.21660 4.29066 4.33560 4.37390 4.41762 4.46790 4.59877 4.66170 4.70965 4.75615 4.78069 4.84228 4.87209 4.93993 5.16668 5.24335 5.25899 5.29842 5.36242 5.38430 5.41704 5.54039 5.78191 5.82871 5.85669 5.87672 6.27890 6.38775 6.53780 6.74791 6.88532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C 0.001 3.999 3 Si 0.923 3.077 4 H -0.232 1.232 5 H -0.243 1.243 6 H -0.230 1.230 7 C -0.070 4.070 8 C -0.108 4.108 9 C 0.111 3.889 10 H 0.106 0.894 11 C 0.373 3.627 12 O -0.421 6.421 13 C -0.168 4.168 14 C -0.077 4.077 15 C -0.131 4.131 16 C -0.088 4.088 17 C -0.131 4.131 18 C -0.062 4.062 19 N -0.625 5.625 20 C 0.149 3.851 21 C -0.218 4.218 22 C -0.011 4.011 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.107 4.107 27 C -0.097 4.097 28 C 0.199 3.801 29 H 0.107 0.893 30 H 0.342 0.658 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 2.146 5.242 5.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C -0.248 4.248 3 Si 0.738 3.262 4 H -0.154 1.154 5 H -0.166 1.166 6 H -0.153 1.153 7 C -0.090 4.090 8 C -0.147 4.147 9 C 0.005 3.995 10 H 0.124 0.876 11 C 0.246 3.754 12 O -0.293 6.293 13 C -0.170 4.170 14 C -0.095 4.095 15 C -0.149 4.149 16 C -0.106 4.106 17 C -0.149 4.149 18 C -0.080 4.080 19 N -0.339 5.339 20 C 0.033 3.967 21 C -0.243 4.243 22 C -0.012 4.012 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.125 4.125 27 C -0.098 4.098 28 C 0.095 3.905 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.349 2.047 4.707 5.307 hybrid contribution 0.204 0.426 -0.069 0.477 sum 1.553 2.473 4.638 5.481 Atomic orbital electron populations 1.68089 1.09859 1.37266 1.07901 1.29928 0.96742 1.04931 0.93196 0.85878 0.81439 0.74886 0.83974 1.15412 1.16578 1.15281 1.21554 0.98605 0.91475 0.97366 1.22792 1.03953 0.91584 0.96350 1.21820 0.87732 0.96866 0.93067 0.87628 1.23201 0.90173 0.73711 0.88320 1.90581 1.84660 1.34077 1.19943 1.20542 0.95127 1.06393 0.94915 1.21482 0.99763 0.96463 0.91829 1.21194 0.92946 1.00810 0.99968 1.21495 0.97021 0.95905 0.96214 1.21223 0.99646 1.00779 0.93221 1.21460 0.91588 0.94562 1.00373 1.46702 1.47214 1.04013 1.35933 1.21557 0.95214 0.85321 0.94636 1.21844 1.12683 0.98284 0.91484 1.18974 0.97267 0.91973 0.92972 1.22055 1.01227 0.98513 0.92180 1.21871 1.00049 0.92529 0.99127 1.21073 1.01813 0.96622 0.95465 1.20605 1.00672 0.98013 0.93224 1.20518 1.01797 0.92791 0.94692 1.20541 0.99265 0.82996 0.87676 0.87557 0.84095 0.87674 0.88270 0.88748 0.85044 0.85192 0.85411 0.85267 0.84967 0.83895 0.85449 0.85910 0.86319 0.86317 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 0.05 12.20 56.23 0.69 0.74 16 2 C 0.00 0.00 3.87 -13.90 -0.05 -0.06 16 3 Si 0.92 -1.60 29.58 -169.99 -5.03 -6.63 16 4 H -0.23 0.19 7.11 56.52 0.40 0.59 16 5 H -0.24 0.30 7.11 56.52 0.40 0.70 16 6 H -0.23 0.41 7.11 56.52 0.40 0.81 16 7 C -0.07 -0.01 1.62 -90.03 -0.15 -0.16 16 8 C -0.11 0.20 5.73 -24.41 -0.14 0.06 16 9 C 0.11 -0.04 2.68 -68.11 -0.18 -0.22 16 10 H 0.11 -0.27 7.19 -51.93 -0.37 -0.65 16 11 C 0.37 0.63 6.19 -30.68 -0.19 0.44 16 12 O -0.42 -2.28 16.53 5.58 0.09 -2.19 16 13 C -0.17 -0.09 5.87 -105.06 -0.62 -0.70 16 14 C -0.08 0.12 9.35 -39.10 -0.37 -0.24 16 15 C -0.13 0.23 10.03 -39.65 -0.40 -0.16 16 16 C -0.09 0.12 10.04 -39.46 -0.40 -0.28 16 17 C -0.13 0.05 10.03 -39.65 -0.40 -0.34 16 18 C -0.06 -0.06 9.60 -39.11 -0.38 -0.44 16 19 N -0.63 -1.15 2.46 -158.87 -0.39 -1.54 16 20 C 0.15 0.31 10.98 -15.66 -0.17 0.13 16 21 C -0.22 -0.73 9.99 -36.90 -0.37 -1.10 16 22 C -0.01 -0.06 5.84 -104.34 -0.61 -0.66 16 23 C -0.12 -0.52 10.00 -37.80 -0.38 -0.90 16 24 C -0.12 -0.42 10.16 -38.25 -0.39 -0.81 16 25 C -0.13 -0.45 10.05 -39.44 -0.40 -0.84 16 26 C -0.11 -0.38 8.99 -39.75 -0.36 -0.74 16 27 C -0.10 -0.41 5.55 -103.73 -0.58 -0.99 16 28 C 0.20 0.46 3.07 -67.96 -0.21 0.25 16 29 H 0.11 0.35 6.81 -51.93 -0.35 -0.01 16 30 H 0.34 -0.55 8.23 -40.82 -0.34 -0.89 16 31 H 0.11 0.08 7.43 -51.93 -0.39 -0.30 16 32 H 0.10 -0.31 8.06 -51.93 -0.42 -0.72 16 33 H 0.09 -0.32 7.97 -51.93 -0.41 -0.73 16 34 H 0.13 -0.54 6.52 -52.49 -0.34 -0.88 16 35 H 0.13 -0.49 8.06 -52.49 -0.42 -0.91 16 36 H 0.13 -0.40 8.06 -52.48 -0.42 -0.83 16 37 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 38 H 0.13 0.20 7.65 -52.49 -0.40 -0.20 16 39 H 0.14 -0.10 8.06 -52.48 -0.42 -0.52 16 40 H 0.13 0.23 8.06 -52.49 -0.42 -0.20 16 41 H 0.12 0.33 8.06 -52.49 -0.42 -0.10 16 42 H 0.12 0.19 8.06 -52.48 -0.42 -0.23 16 43 H 0.12 0.16 8.06 -52.49 -0.42 -0.26 16 44 H 0.11 0.21 6.51 -52.49 -0.34 -0.13 16 LS Contribution 362.56 15.07 5.46 5.46 Total: 0.00 -6.62 362.56 -11.44 -18.06 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -5.55 Total: -6.14 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -6.71 Total: -7.76 kcal Atomic # 7 Polarization: -1.10 SS G_CDS: 0.29 Total: -0.81 kcal Atomic # 8 Polarization: -2.28 SS G_CDS: 0.09 Total: -2.19 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: -5.03 Total: -6.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -6.62 -11.44 -18.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004566200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.010 kcal (2) G-P(sol) polarization free energy of solvation -6.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds