Wall clock time and date at job start Tue Mar 31 2020 04:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27939 * 1 3 3 Si 1.86802 * 119.99980 * 2 1 4 4 H 1.48497 * 109.46807 * 239.99618 * 3 2 1 5 5 H 1.48497 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47267 * 119.99791 * 3 2 1 7 7 C 1.50706 * 120.00026 * 179.97438 * 2 1 3 8 8 C 1.55449 * 110.90948 * 266.46015 * 7 2 1 9 9 C 1.54926 * 101.87884 * 155.65906 * 8 7 2 10 10 H 1.08998 * 110.18379 * 208.20105 * 9 8 7 11 11 C 1.50702 * 110.18958 * 86.43855 * 9 8 7 12 12 O 1.21253 * 120.00281 * 260.00042 * 11 9 8 13 13 C 1.47171 * 120.00049 * 79.72301 * 11 9 8 14 14 C 1.39858 * 120.16740 * 359.97438 * 13 11 9 15 15 C 1.37895 * 119.81868 * 179.74452 * 14 13 11 16 16 C 1.38398 * 120.17260 * 0.53259 * 15 14 13 17 17 C 1.38401 * 120.35080 * 359.72645 * 16 15 14 18 18 C 1.37886 * 120.17334 * 0.02562 * 17 16 15 19 19 N 1.46426 * 105.78723 * 327.35925 * 9 8 7 20 20 C 1.38643 * 128.22177 * 191.29933 * 19 9 8 21 21 C 1.34882 * 116.14413 * 218.41067 * 20 19 9 22 22 C 1.47709 * 119.33759 * 1.02021 * 21 20 19 23 23 C 1.39598 * 120.23679 * 162.32851 * 22 21 20 24 24 C 1.41582 * 118.95089 * 177.19563 * 23 22 21 25 25 C 1.38397 * 120.60060 * 2.67234 * 24 23 22 26 26 C 1.38476 * 120.25142 * 358.23931 * 25 24 23 27 27 C 1.37533 * 119.97339 * 359.97438 * 26 25 24 28 28 C 1.47808 * 109.32370 * 14.64364 * 19 9 8 29 29 H 1.09003 * 110.58251 * 249.74650 * 28 19 9 30 30 H 0.97000 * 120.00491 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.83166 * 142.80551 * 7 2 1 32 32 H 1.08990 * 110.95094 * 37.51110 * 8 7 2 33 33 H 1.08998 * 110.97602 * 273.81528 * 8 7 2 34 34 H 1.07997 * 120.09251 * 0.02562 * 14 13 11 35 35 H 1.07996 * 119.90844 * 180.23346 * 15 14 13 36 36 H 1.08005 * 119.82464 * 179.69708 * 16 15 14 37 37 H 1.08000 * 119.91339 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.09102 * 180.02562 * 18 17 16 39 39 H 1.08005 * 121.93026 * 38.39253 * 20 19 9 40 40 H 1.07998 * 120.33069 * 180.99724 * 21 20 19 41 41 H 1.08002 * 120.08807 * 359.76988 * 23 22 21 42 42 H 1.08004 * 119.54116 * 180.86178 * 24 23 22 43 43 H 1.08001 * 119.87217 * 178.25680 * 25 24 23 44 44 H 1.08002 * 120.01246 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6178 0.0000 4 1 3.0672 1.6963 -1.2125 5 1 1.2483 2.7464 -0.0006 6 1 3.0671 1.6965 1.2125 7 6 2.0329 -1.3052 0.0006 8 6 2.3880 -1.7401 1.4501 9 6 2.5395 -3.2741 1.2947 10 1 2.2982 -3.7729 2.2333 11 6 3.9441 -3.6176 0.8702 12 8 4.1836 -3.8602 -0.2934 13 6 5.0263 -3.6527 1.8669 14 6 4.7552 -3.3673 3.2090 15 6 5.7737 -3.4074 4.1378 16 6 7.0632 -3.7182 3.7431 17 6 7.3405 -3.9966 2.4160 18 6 6.3321 -3.9656 1.4761 19 7 1.5871 -3.6650 0.2534 20 6 1.1839 -4.9423 -0.1045 21 6 1.0042 -5.1611 -1.4233 22 6 1.2626 -4.0661 -2.3804 23 6 1.4454 -4.3456 -3.7358 24 6 1.6316 -3.2707 -4.6382 25 6 1.6876 -1.9665 -4.1785 26 6 1.5253 -1.6944 -2.8304 27 6 1.3070 -2.7225 -1.9434 28 6 1.1318 -2.4595 -0.4705 29 1 0.0874 -2.2469 -0.2421 30 1 -0.4851 0.8400 -0.0004 31 1 2.9296 -1.2354 -0.6153 32 1 1.5796 -1.4963 2.1392 33 1 3.3245 -1.2870 1.7751 34 1 3.7502 -3.1206 3.5178 35 1 5.5653 -3.1909 5.1751 36 1 7.8576 -3.7432 4.4745 37 1 8.3494 -4.2379 2.1157 38 1 6.5498 -4.1835 0.4409 39 1 1.0233 -5.7176 0.6301 40 1 0.6751 -6.1274 -1.7760 41 1 1.4022 -5.3653 -4.0890 42 1 1.7600 -3.4753 -5.6909 43 1 1.8582 -1.1579 -4.8738 44 1 1.5701 -0.6753 -2.4758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004566200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:09 Heat of formation + Delta-G solvation = 92.454646 kcal Electronic energy + Delta-G solvation = -28656.684536 eV Core-core repulsion = 25006.056417 eV Total energy + Delta-G solvation = -3650.628119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.08472 -40.57070 -39.20558 -38.45836 -36.99182 -34.95635 -33.15331 -32.16573 -31.87601 -31.78641 -29.52035 -29.19334 -25.62254 -25.00968 -23.71641 -23.64641 -23.04983 -22.72713 -20.79987 -20.39217 -19.53884 -18.39128 -18.29504 -17.68792 -17.19974 -16.72746 -16.50967 -16.16695 -15.88461 -15.70426 -15.33482 -15.29694 -14.92419 -14.84830 -14.58883 -14.45645 -14.33639 -14.16126 -13.74534 -13.54012 -13.50835 -13.37808 -13.18375 -12.85021 -12.68029 -12.54579 -12.29374 -12.24816 -12.08479 -11.96863 -11.78503 -11.32359 -11.18090 -10.83809 -9.99002 -9.94619 -9.93336 -9.75177 -9.54923 -8.09487 -0.32271 0.13506 0.40917 0.42809 0.75826 1.03491 1.38988 1.41596 1.58993 1.70940 1.86258 2.13950 2.84546 2.93359 2.96230 3.25566 3.43511 3.67846 3.82014 3.85687 3.92877 3.96350 4.01891 4.10461 4.12708 4.17693 4.25948 4.28006 4.42389 4.47766 4.49556 4.53754 4.57078 4.60013 4.79333 4.86127 4.87741 4.92182 5.01251 5.07318 5.07395 5.17150 5.19909 5.33167 5.36813 5.47077 5.52738 5.57392 5.61116 5.64504 5.95756 6.07501 6.20101 6.47690 6.78292 6.87493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.250 1.250 5 H -0.249 1.249 6 H -0.221 1.221 7 C -0.073 4.073 8 C -0.102 4.102 9 C 0.108 3.892 10 H 0.138 0.862 11 C 0.377 3.623 12 O -0.472 6.472 13 C -0.184 4.184 14 C -0.068 4.068 15 C -0.133 4.133 16 C -0.090 4.090 17 C -0.142 4.142 18 C -0.084 4.084 19 N -0.629 5.629 20 C 0.155 3.845 21 C -0.250 4.250 22 C -0.032 4.032 23 C -0.144 4.144 24 C -0.128 4.128 25 C -0.145 4.145 26 C -0.116 4.116 27 C -0.114 4.114 28 C 0.200 3.800 29 H 0.096 0.904 30 H 0.349 0.651 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 3.017 8.103 8.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.250 5.250 2 C -0.243 4.243 3 Si 0.772 3.228 4 H -0.173 1.173 5 H -0.172 1.172 6 H -0.143 1.143 7 C -0.093 4.093 8 C -0.141 4.141 9 C 0.003 3.997 10 H 0.156 0.844 11 C 0.254 3.746 12 O -0.347 6.347 13 C -0.186 4.186 14 C -0.086 4.086 15 C -0.150 4.150 16 C -0.108 4.108 17 C -0.160 4.160 18 C -0.103 4.103 19 N -0.341 5.341 20 C 0.038 3.962 21 C -0.275 4.275 22 C -0.033 4.033 23 C -0.162 4.162 24 C -0.146 4.146 25 C -0.163 4.163 26 C -0.134 4.134 27 C -0.116 4.116 28 C 0.096 3.904 29 H 0.114 0.886 30 H 0.167 0.833 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.189 0.811 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.342 2.922 7.598 8.250 hybrid contribution 0.247 0.128 -0.929 0.970 sum 1.589 3.050 6.669 7.503 Atomic orbital electron populations 1.68077 1.10370 1.38061 1.08478 1.30024 0.96649 1.04947 0.92678 0.85410 0.80504 0.73524 0.83388 1.17345 1.17168 1.14304 1.21559 0.97832 0.91270 0.98643 1.22915 1.05686 0.90198 0.95262 1.22087 0.85878 0.98317 0.93393 0.84443 1.23657 0.91341 0.71898 0.87700 1.90576 1.85444 1.36770 1.21917 1.20563 0.94433 1.07759 0.95838 1.21798 1.01369 0.94946 0.90524 1.21576 0.92485 0.99751 1.01220 1.21821 0.98162 0.94898 0.95939 1.21383 0.99744 1.01129 0.93720 1.21475 0.92795 0.96084 0.99939 1.46909 1.47261 1.03807 1.36161 1.22047 0.93366 0.85969 0.94801 1.22008 1.14842 0.98515 0.92176 1.19346 0.97383 0.92935 0.93615 1.22302 1.02088 0.99220 0.92573 1.22133 0.99918 0.92609 0.99932 1.21376 1.01824 0.97161 0.95938 1.20854 1.00509 0.98620 0.93456 1.20860 1.01868 0.92754 0.96101 1.20502 0.99153 0.84093 0.86674 0.88646 0.83286 0.88846 0.86188 0.86817 0.82030 0.82541 0.83462 0.84517 0.86991 0.81056 0.84820 0.85240 0.84753 0.84544 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 0.14 12.20 24.11 0.29 0.43 16 2 C 0.01 -0.01 3.87 88.68 0.34 0.33 16 3 Si 0.96 -3.89 29.58 68.60 2.03 -1.86 16 4 H -0.25 0.30 7.11 99.48 0.71 1.00 16 5 H -0.25 0.79 7.11 99.48 0.71 1.49 16 6 H -0.22 1.20 7.11 99.48 0.71 1.91 16 7 C -0.07 -0.03 1.62 -10.41 -0.02 -0.05 16 8 C -0.10 0.55 5.73 32.10 0.18 0.74 16 9 C 0.11 -0.19 2.68 44.92 0.12 -0.07 16 10 H 0.14 -1.11 7.19 -2.39 -0.02 -1.13 16 11 C 0.38 1.45 6.19 28.03 0.17 1.63 16 12 O -0.47 -6.23 16.53 -2.95 -0.05 -6.28 16 13 C -0.18 -0.17 5.87 -20.15 -0.12 -0.29 16 14 C -0.07 0.38 9.35 22.58 0.21 0.59 16 15 C -0.13 0.82 10.03 22.23 0.22 1.05 16 16 C -0.09 0.37 10.04 22.35 0.22 0.60 16 17 C -0.14 0.07 10.03 22.23 0.22 0.30 16 18 C -0.08 -0.29 9.60 22.58 0.22 -0.07 16 19 N -0.63 -2.44 2.46 -656.56 -1.62 -4.05 16 20 C 0.16 0.72 10.98 82.84 0.91 1.63 16 21 C -0.25 -2.17 9.99 24.00 0.24 -1.94 16 22 C -0.03 -0.40 5.84 -19.68 -0.11 -0.51 16 23 C -0.14 -1.62 10.00 23.42 0.23 -1.39 16 24 C -0.13 -1.19 10.16 23.13 0.23 -0.95 16 25 C -0.14 -1.24 10.05 22.36 0.22 -1.01 16 26 C -0.12 -1.05 8.99 22.16 0.20 -0.85 16 27 C -0.11 -1.20 5.55 -19.28 -0.11 -1.31 16 28 C 0.20 1.09 3.07 44.26 0.14 1.23 16 29 H 0.10 0.71 6.81 -2.39 -0.02 0.70 16 30 H 0.35 -1.15 8.23 -92.71 -0.76 -1.91 16 31 H 0.09 0.27 7.43 -2.38 -0.02 0.25 16 32 H 0.12 -1.09 8.06 -2.39 -0.02 -1.11 16 33 H 0.11 -1.03 7.97 -2.39 -0.02 -1.05 16 34 H 0.16 -1.97 6.52 -2.91 -0.02 -1.99 16 35 H 0.16 -1.79 8.06 -2.91 -0.02 -1.82 16 36 H 0.15 -1.24 8.06 -2.91 -0.02 -1.27 16 37 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 38 H 0.11 0.72 7.65 -2.91 -0.02 0.70 16 39 H 0.17 -0.36 8.06 -2.91 -0.02 -0.39 16 40 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 41 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.14 0.52 8.06 -2.91 -0.02 0.49 16 44 H 0.13 0.65 6.51 -2.91 -0.02 0.64 16 Total: 0.00 -19.08 362.56 5.42 -13.67 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: 1.02 Total: -1.55 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 3.74 Total: -0.35 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: -1.32 Total: -3.62 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.05 Total: -6.28 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.03 Total: -1.86 kcal Total: -19.08 5.42 -13.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004566200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.121 kcal (2) G-P(sol) polarization free energy of solvation -19.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds